Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0207 ATGGCGATTGGGAATGGAACTACAACACGAATTCTCCCATTTTCCTGCTTTCTATACTGCTATTATTGCTTTATATTAGTGTTTTTTTTGGTGGAGTTTTCCCATGGCCAGTCTACACAAACCAATAATGTTCTTACACAAGGCCAAAAGCTATCAATTGGGTCTCAATTAATTTCATCCACCGCCAACTTTATGCTAGGATTTTACAATCCTTACAATTCTAATACCACTTATTTAGGAATCTCCTACAACACTAATCACCAGAAGCCAATCTGGATAGCCAATCCAAACTCCCCATTTCCCAGCAGTTCCACTCCCGTCAGCCTCACCATCGACGCCAACGGCAGCTTCAAAATTCAAAATGGCTATTATTCCTTTTCACTCTTCGATGTCGAGCAACCAACCACCAGCAGCGCCATATTGCAAGACGACGGCAACTTTGTACTAAGAGAGCTGAACAGAGATGGATCGGTTAAGCAAATTCTGTGGCAGAGCTTTGATCATCCAACAGATACTCTGCTTCCCGGAATGAAAATTGGGATCAATCACAAAACAAACTCCACTTGGTCATTAACATCATGGAGAACCATTGAATCTCCCATGGCAGGAGCATTCACTCTGGCAATGAATCCAAACAATACATATCAATTACTGATGTTTTTCAGAGGTGCTCTGTTTTGGAGCAGCGGGAATTGGAAAGACGGTTCGTTCGAATTCTTACAATATCTGTCGAATTTCGACCCTTACAACAGCAATCAAAACCAAGAAATGTATATCAATCGAGTTTCGAATGAGAATGAAACGTTTTTCATTTACTACATTCCGAAATTCGATCGATCTCCCACTCCTTACGCGTATCGAAATCTATATTACCCAAAATCAGGGGAACTTGTACTACCCCAATTGAGATTAGAAGATGGTGGAAATTTGGGGATTAACAATCGGAGTTCGTACTCTGTTTGCTCCCTGTTTGAAAACGAGGATGGAGGGTGTGTGTGGAAAGAACAGCAAAAAATTCCGGACTGCAGGAATTGGTTGTATGGGTTTAGCGAGCCATTTAGTCCGAGGTTTGGTTACATGGAGGAGGGAATTAATGGTTCTCATTACAACAAACAAAGTGGCAACTTAACCATGTTTGAATGTGAAACTATTTGCATTTTCGATTGTGATTGCATCGCTATTGGATTTAGCGATGAAGAAGATGGCACCAGTTGTGAGATTTGGAAATCAGGAGCCTCGTTTAAGTCAGTCTACGCCGGTTCACGAGAGTATTTCTTTCTGGACCCCGCGACCCAGACCGGCCAAGGAAAATGGAAGGTTTGGATGCAAGTCACTATCGCTCTAACCATCCCTGCGATCTTGCTACTGCTCTGTTTTATTTTGTACATCAAATGGAAAACACAGATATTTAAGGTTACGGGGAAAATGAAGAGAAGCTTTGTTTGCGTGATGGGGTTCATATCCGAAGGTTTTAATATTTTAGGAATAATGATAAGACAAATAAGAGATGGGAAAAAGAATCCTGAATTGCAAATTTTTGACTTTGAAAGCATAGTTTCTGCCACAAATAATTTTGGAGATGAATGTAAGCTTGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAATTTTGACGGATGGCCAAGAAGTAGCCATTAAAAGATTGTCTAAGAATTCAGGACAAGGTTTGGTGGAGTTCAAGAATGAAACTATTTTGATTGCTAAACTTCAACACACAAATTTGGTTAGGCTTATTGGTTGCTGCATTTATAAAGAAGAGAAATTGTTGGTGTATGAGTACATGCCCAACAAAAGCCTTGACTTCTTCCTCTTTGACTCCGAGAAGAAGTTAGCATTAAATTGGGAGAAACGTTTGCACATCATTCAAGGGATCGTTCAAGGACTACTCTACCTTCACTACTACTCGAGGGTACGAATAATTCATCGAGATTTAAAAGTCAGCAATATCTTACTCGATGATGAGATGAATGCAAAAATATCAGATTTTGGTATGGCTAGAGTGTTTAAGCCATCAGAGCATGAAGCAAATACAAGTCGAGTGGTTGGTACATATGGCTATATATCACCAGAATATGCAATGGAGGGCATTTTTTCAATAAAGTCGGACGTGTACAGCTTTGGAATATTATTGTTGGAGATCGTAACAAGTCGAAAAAACTACAACAATTATGACACAGAACGACCACTCAATCTCATAGGATACGCATGGGAATTGTGGGTGAATGGGAGAGGAGAAGAGCTGATTGATTTGGGATTGTGCAATAACTATGATGAGAAAGCAAAGGCTTTAAGGTGCATTCATGTTAGTCTTTTGTGCGTCCAACAAATTCCGGCTGATAGGCCGACGATGTTGGATGTTTATTTCATGATTAATAATGATTCGACTCAACTTCCCTCTCCCAAACAACCTGCTTTTTTTGTTGCTCAAAACCCAAATTCCTCCCAACTACAACTGGTGGAGGTGGTCGATACTGTACTCATACAACCAGCTGCAGAGCCAACATTGGAAATTTCTTCATTCGATACTATGTCACTCTCACTCATGGGATTTGCGAGCCGTAAATTGCCGCGCACGAGCGATCCCTCTTTGTGCTCTTCGACTCGGGCCAATTTCTCAGCCATGTCGTCCAAGCAAGGAGGGAAGGCAAAGCCTTTGAAGCAACCCAAGGTTGAGAAGAAAGATTACGACGAGAGCACTAAAACCCACTCAGTCCGACCATCTCCGAGACCAGCTCTCGGGCCCACTTTGGAGCAGTCGTCGGTGTCTTACTATGCTTCTCTCCTCCAATCTTGCGTCGTCCGAAAGGCGATAGAGCCTGGAAAGCAGCTTCACGCTCGTATGTGGCTAATGGGTATTAGTTTCAACCCTCTCTTGGCTACTAAACTAGTCAATCTTTACTGCATCTGCAACTCTTTGATAAATGCTCATCTCTTGTTTGATAGAATTTCCAAACGAAATCTGTTCCTTTGGAATGTTATGATACGAGGTTATGCTTGGAATGGACCATATGAGGTTGCAATTTCACTTTACTACCAAATGCAAGATTATGGGCTTGTGCCCGATAAATTTACCTTCCCCTTTGTGCTCAAAGCTTGCTCGGCTCTTTCTGCCATGGAAGAGGGAAAGAAGATTCATAAAGATGTCTTACGCACTGGGTTGGAGACCGATGTGTTTGTTGGTGCGGCCCTGATTGATATGTATGCTAAATGTGGTTGTGTAGAGAGTGCTAGACAGGTGTTTGATAAAATTGATGAGAGAGATGTTGTGTGTTGGAACTCCATGCTTGCAGCTTATTCTCAAAATGGGCAACCAGATGGGTCGCTTGCTCTCTGCAGAGTGATGGCTTTTGATGGAGTGAAGCCCACCGAGGGGACACTTGTCATCTCCATCTCAGCTTCAGCTGACAATGGCCTTCTACCTCAAGGGAAGGAGCTTCATGGTTATAGTTGGAGACATGGATTTGAATCGAATGACAAGGTGAAAACTGCATTGATGGATATGTATGCCAAGAGTGGCTCGGTAAATGTTGCTAGGAGCTTGTTTGAGATATTGGAGGAGAAGAGGGTAGTCTCTTGGAACACCATGATCACTGGGTATGCAATGCATGGTCATGCTAATGAAGCTTTGGACCTGTTTAAGGAGATGAAAGGGAAAGCTTTACCTGATCATATAACTTTTGTTGGAGTTCTCGCTGCCTGCAGCCATGGAGGATTGCTTGATGAAGGGAAGATGTATTTCAGATCAATGGTAACTGATTACGTTATATGTCCTACTGTTCAACACTACACTTGTATGATTGATCTACTTGGTCATTGTGGTCATTTGGAAGAAGCTTACAACCTCATAATGGAAATGAGAGTAGAGCCTGATGCTGGTGTCTGGGGTGCATTGCTTCACTCGTGCAAAATCCATGGCAATGTGGAGATGGGTGAGCTAGCTTTAGAGAAGTTGATTGAGCTTGAACCTGATGATGGTGGGAACTATGTGATTCTATCGAATATGTATGCTCAAGCTGGTAAATGGCAAGGAGTTGCAAGACTAAGGAATCTCATGATGGATAAGGGATTGAAGAAAAGTATTGCTTGTAGTTGGATAGAAGTGAGAAACAAAGTTCATGCTTTCTTGTCGGAAGATACTTCTCATCCTGAGTCTGAAGCAATTTATTCCGAGTTAAAACGGATAGGGAAGTTGATGAAAGAAGCTGGCTATGCACCGCAAATTGGGTCAGTTTTCCACGATGTTGAAGATGATGAAAAGGTTGATATGGTGTGTTGTCATAGTGAAAGATTGGCCATTGCTTTTGGACTCATTAGCACACCTGTGGGAACTAAGCTCTTGATTATCAAGAACCTTCGAGTTTGTGAGGATTGCCATGTTGCAATCAAGTTCATATCGAAGATCACAGAGAGGGAAATTACTATTAGAGATGTTAATCGCTATCATCACTTCAAAGATGGACTCTGCTCTTGTGAGGAAGGATTGGTTGCCACCAAAAACCTTGGATCCTTGGGAATGAGAAATGGTGAAGCAAAAGGTGGATCTGGCGAATATTCAAAAGAAGAAGGAGGAGGAAAAGGTGAGAACCTGAACTTGAAAGCGCTCAGGGAACTTAGAGCGAAGGCCCAACAGAAGGGGACCTTTGGAGGTTCTGGCCTGAAGAAGAGTGGGAAGAAATGA 4698 42.17 MAIGNGTTTRILPFSCFLYCYYCFILVFFLVEFSHGQSTQTNNVLTQGQKLSIGSQLISSTANFMLGFYNPYNSNTTYLGISYNTNHQKPIWIANPNSPFPSSSTPVSLTIDANGSFKIQNGYYSFSLFDVEQPTTSSAILQDDGNFVLRELNRDGSVKQILWQSFDHPTDTLLPGMKIGINHKTNSTWSLTSWRTIESPMAGAFTLAMNPNNTYQLLMFFRGALFWSSGNWKDGSFEFLQYLSNFDPYNSNQNQEMYINRVSNENETFFIYYIPKFDRSPTPYAYRNLYYPKSGELVLPQLRLEDGGNLGINNRSSYSVCSLFENEDGGCVWKEQQKIPDCRNWLYGFSEPFSPRFGYMEEGINGSHYNKQSGNLTMFECETICIFDCDCIAIGFSDEEDGTSCEIWKSGASFKSVYAGSREYFFLDPATQTGQGKWKVWMQVTIALTIPAILLLLCFILYIKWKTQIFKVTGKMKRSFVCVMGFISEGFNILGIMIRQIRDGKKNPELQIFDFESIVSATNNFGDECKLGQGGFGPVYKGILTDGQEVAIKRLSKNSGQGLVEFKNETILIAKLQHTNLVRLIGCCIYKEEKLLVYEYMPNKSLDFFLFDSEKKLALNWEKRLHIIQGIVQGLLYLHYYSRVRIIHRDLKVSNILLDDEMNAKISDFGMARVFKPSEHEANTSRVVGTYGYISPEYAMEGIFSIKSDVYSFGILLLEIVTSRKNYNNYDTERPLNLIGYAWELWVNGRGEELIDLGLCNNYDEKAKALRCIHVSLLCVQQIPADRPTMLDVYFMINNDSTQLPSPKQPAFFVAQNPNSSQLQLVEVVDTVLIQPAAEPTLEISSFDTMSLSLMGFASRKLPRTSDPSLCSSTRANFSAMSSKQGGKAKPLKQPKVEKKDYDESTKTHSVRPSPRPALGPTLEQSSVSYYASLLQSCVVRKAIEPGKQLHARMWLMGISFNPLLATKLVNLYCICNSLINAHLLFDRISKRNLFLWNVMIRGYAWNGPYEVAISLYYQMQDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVLRTGLETDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLAAYSQNGQPDGSLALCRVMAFDGVKPTEGTLVISISASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFEILEEKRVVSWNTMITGYAMHGHANEALDLFKEMKGKALPDHITFVGVLAACSHGGLLDEGKMYFRSMVTDYVICPTVQHYTCMIDLLGHCGHLEEAYNLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLIELEPDDGGNYVILSNMYAQAGKWQGVARLRNLMMDKGLKKSIACSWIEVRNKVHAFLSEDTSHPESEAIYSELKRIGKLMKEAGYAPQIGSVFHDVEDDEKVDMVCCHSERLAIAFGLISTPVGTKLLIIKNLRVCEDCHVAIKFISKITEREITIRDVNRYHHFKDGLCSCEEGLVATKNLGSLGMRNGEAKGGSGEYSKEEGGGKGENLNLKALRELRAKAQQKGTFGGSGLKKSGKK 1565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1841038 1850207 - CcPI632755_09g002070.1 Cco09g0207 186664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0207 1565 ProSiteProfiles Protein kinase domain profile. 525 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0207 1565 Gene3D Tetratricopeptide repeat domain 1007 1154 IPR011990 GO:0005515(InterPro)
Cco09g0207 1565 Gene3D Tetratricopeptide repeat domain 1170 1381 IPR011990 GO:0005515(InterPro)
Cco09g0207 1565 SUPERFAMILY Protein kinase-like (PK-like) 508 817 IPR011009 -
Cco09g0207 1565 SMART blect_4 42 169 IPR001480 -
Cco09g0207 1565 ProSiteProfiles Bulb-type lectin domain profile. 42 162 IPR001480 -
Cco09g0207 1565 Gene3D - 37 167 IPR036426 -
Cco09g0207 1565 MobiDBLite consensus disorder prediction 879 919 - -
Cco09g0207 1565 Gene3D Phosphorylase Kinase; domain 1 499 600 - -
Cco09g0207 1565 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 601 805 - -
Cco09g0207 1565 SMART serkin_6 525 778 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0207 1565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1195 1229 IPR002885 -
Cco09g0207 1565 MobiDBLite consensus disorder prediction 1520 1534 - -
Cco09g0207 1565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1094 1128 IPR002885 -
Cco09g0207 1565 NCBIfam pentatricopeptide repeat 1197 1223 IPR002885 -
Cco09g0207 1565 NCBIfam pentatricopeptide repeat 996 1028 IPR002885 -
Cco09g0207 1565 NCBIfam pentatricopeptide repeat 1096 1130 IPR002885 -
Cco09g0207 1565 FunFam Pentatricopeptide repeat-containing protein mitochondrial 1148 1257 - -
Cco09g0207 1565 CDD STKc_IRAK 531 799 - -
Cco09g0207 1565 MobiDBLite consensus disorder prediction 1514 1534 - -
Cco09g0207 1565 Pfam E motif 1311 1373 IPR046848 -
Cco09g0207 1565 Pfam D-mannose binding lectin 91 195 IPR001480 -
Cco09g0207 1565 MobiDBLite consensus disorder prediction 891 910 - -
Cco09g0207 1565 Pfam DYW family of nucleic acid deaminases 1409 1499 IPR032867 GO:0008270(InterPro)
Cco09g0207 1565 Pfam PPR repeat 1069 1094 IPR002885 -
Cco09g0207 1565 Pfam PPR repeat 1269 1293 IPR002885 -
Cco09g0207 1565 Pfam PPR repeat 1169 1195 IPR002885 -
Cco09g0207 1565 Pfam PPR repeat 1096 1125 IPR002885 -
Cco09g0207 1565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 993 1027 IPR002885 -
Cco09g0207 1565 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 495 600 - -
Cco09g0207 1565 Pfam PPR repeat family 1196 1241 IPR002885 -
Cco09g0207 1565 Pfam PPR repeat family 993 1039 IPR002885 -
Cco09g0207 1565 Pfam Protein tyrosine and serine/threonine kinase 529 736 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0207 1565 FunFam Pentatricopeptide (PPR) repeat-containing protein 1258 1420 - -
Cco09g0207 1565 FunFam Pentatricopeptide repeat-containing protein At3g16610 1005 1147 - -
Cco09g0207 1565 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 156 813 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco09g0207 1565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0207 1565 Gene3D Transferase(Phosphotransferase) domain 1 601 809 - -
Cco09g0207 1565 CDD B_lectin 51 169 IPR001480 -
Cco09g0207 1565 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 196 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2132 Cco-Chr2:34115037 Cco09g0207 Cco-Chr9:1841038 2.80E-93 dispersed
Cco05g0888 Cco-Chr5:7675173 Cco09g0207 Cco-Chr9:1841038 1.20E-85 dispersed
Cco05g1131 Cco-Chr5:10363639 Cco09g0207 Cco-Chr9:1841038 2.20E-135 dispersed
Cco08g0261 Cco-Chr8:4708124 Cco09g0207 Cco-Chr9:1841038 6.10E-80 dispersed
Cco09g0207 Cco-Chr9:1841038 Cco09g0250 Cco-Chr9:2272294 7.00E-222 dispersed
Cco10g0044 Cco-Chr10:493562 Cco09g0207 Cco-Chr9:1841038 2.70E-101 dispersed
Cco10g0590 Cco-Chr10:7796754 Cco09g0207 Cco-Chr9:1841038 6.40E-122 dispersed
Cco10g0591 Cco-Chr10:7814722 Cco09g0207 Cco-Chr9:1841038 6.50E-118 dispersed
Cco11g0378 Cco-Chr11:3775201 Cco09g0207 Cco-Chr9:1841038 1.80E-99 dispersed
Cco09g0207 Cco-Chr9:1841038 Cco06g1728 Cco-Chr6:27772196 4.80E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87076 PF07714 PK_Tyr_Ser-Thr 5.00E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0207 - - - 0.0