Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0216 ATGGGAATCAATTCCAATCGAGTTGAAAACTTGGAATGTCGTGAAACGGTGTTGACAATTCCGGCGGAGGCAATGCCGGCGCCGCCTCAACCGGAGGTTGAGATTCATAAAGTCTGTTTGCCTCCCAACAAAACTACGTTTCAGAAACTCAAGCACAAGTTATCGGAAGTGTTCTTCCCTGATGATCCGTTTCATAGATTCAAGAACCAAACGTGGGTTAGAAAAGTGCTTTTAGGCCTTCAATTTCTGTTCCCTGTTTTTCAGTGGGGCCCTGATTATACCCTCGCTCTTTTCAAGTCTGACATCGTTTCTGGTCTTACAATTGCTAGCCTTGCTATTCCCCAGGGAATAAGTTATGCGAAACTAGCAAATTTGCCTCCAATCATCGGATTATATTCAAGTTTTGTGCCTCCACTGATATATTCTATCCTCGGGAGCTCTAGGCATCTTGCTGTTGGGCCAGTATCAATTGCCTCTTTGGTCATGGGATCGATGATTACTGAGGCAGTCTCTTACAACGAAAACCCAACTCTGTATCTTAAGTTGGCTTTTACAGCTACTTTCTTTGCTGGTGTATTCCAAGCATCTTTAGGCTTGTTAAGGTTAGGCTTTGTGATTGATTTTCTGTCAAAGGCTACTTTGGTTGGCTTTATGGCTGGTGCAGCAGTCATTGTGTCATTGCAGCAACTCAAAGGGTTGCTTGGAATTGCCCATTTCACCACCAAAATGCAATTTATTCCTGTCATGTCTTCTGTTTTCCACCGCAAAGATGAGTGGTCCTGGCAAACTATTGTTTTAGGCTTCATTTTCCTACTGTTTCTTCTGGGAACAAGGCATATAAGCATCAAGAAACCAAAGCTTTTCTGGATTTCAGCGGCTGCTCCACTGACATCAGTTATTTTGTCCACTCTTTTAGTGTTCTTGCTCAGAGCAAAATTTCCTGGAATCTCAGTGATTGGTCATTTGCCAAAGGGTGTCAATCCTCCATCTATGAACATGCTGTACTTTACTGGTCCTCAATTAGCACTTGCCATTAAAACTGGCATTATAACTGGAATTCTCTCGCTCACCGAAGGAATTGCCGTAGGAAGGACGTTTGCTGGTTTGAAAAACTATCAAGTGGATGGGAATAAAGAAATGATGGCTATTGGTTTTATGAACATGGCTGGATCTTGTTCTTCATGCTATGTCACTACAGGATCATTTTCTCGGTCTGCTGTGAATTACAATGCTGGGGCACAAACAGCAGTTTCAAATGTTGTGATGTCTGCAGCTGTGCTCATTACATTGTTGTTTCTGATGCCACTGTTCCATTATACTCCAAATTTCATCCTAGCAGCCATCATTATAACAGCAGTAATTGGACTAATTGATTACCAAGCAGCCTGTAGGTTGTGGAAAGTTGACAAACTCGATTTTTTAGCTTGTGTTTGTTCTTTCTTTGGTGTTCTTTTCATCTCGGTTCCATTGGGTCTTGCCATCGCAGTTGGAGTCTCTGTTTTCAAGATTCTTCTGCATGTCACCAGGCCAAACACCATGGTTTTGGGGAATATTTCTGGAACTCATATATTCCAAAACCTTGACCGTTACCGGGATGCCTCAAGGGTGCCTTCATTTCTCATTCTTTCCATTGAATCTCCAATCTACTTTGCAAATTCAACATACCTACAAGAAAGGATTCTTAGGTGGGTTAGGGAAGAAGAAGAGCGGATAAAATCGACTAATGATAGCCCACTGAAATGTGTAATACTAGACATGACAGCTGTGACGTCCATAGATACAAGTGGTATAGAAACCGTATGTGAGCTTAGGAAGATGTTGATGCAAAAATCATTGCAGTTTGTGCTAGCAAATCCTGGTGGAAATGTGATGGAAAAACTGTATAAATCAAAGGTGTTGGAGCAGTTCGAGTTTAACGGTCTCTACCTCTCAGTTGGAGAAGCTGTGAAGGACATTTCTTCTGTATGGAAGAGGCTGCCATAA 1983 42.11 MGINSNRVENLECRETVLTIPAEAMPAPPQPEVEIHKVCLPPNKTTFQKLKHKLSEVFFPDDPFHRFKNQTWVRKVLLGLQFLFPVFQWGPDYTLALFKSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSILGSSRHLAVGPVSIASLVMGSMITEAVSYNENPTLYLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIAHFTTKMQFIPVMSSVFHRKDEWSWQTIVLGFIFLLFLLGTRHISIKKPKLFWISAAAPLTSVILSTLLVFLLRAKFPGISVIGHLPKGVNPPSMNMLYFTGPQLALAIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNMAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNVVMSAAVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAACRLWKVDKLDFLACVCSFFGVLFISVPLGLAIAVGVSVFKILLHVTRPNTMVLGNISGTHIFQNLDRYRDASRVPSFLILSIESPIYFANSTYLQERILRWVREEEERIKSTNDSPLKCVILDMTAVTSIDTSGIETVCELRKMLMQKSLQFVLANPGGNVMEKLYKSKVLEQFEFNGLYLSVGEAVKDISSVWKRLP 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1916017 1919743 - CcPI632755_09g002160.1 Cco09g0216 186673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0216 660 ProSiteProfiles STAS domain profile. 529 652 IPR002645 -
Cco09g0216 660 Gene3D STAS domain 509 654 IPR036513 -
Cco09g0216 660 CDD STAS_SulP_like_sulfate_transporter 530 645 - -
Cco09g0216 660 FunFam Sulfate transporter 31 509 655 - -
Cco09g0216 660 Pfam STAS domain 532 648 IPR002645 -
Cco09g0216 660 PANTHER SULFATE TRANSPORTER 71 651 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0216 660 SUPERFAMILY SpoIIaa-like 534 650 IPR036513 -
Cco09g0216 660 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cco09g0216 660 NCBIfam sulfate permease 85 648 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0216 660 Pfam Sulfate permease family 98 477 IPR011547 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0216 Cco-Chr9:1916017 Cco09g0702 Cco-Chr9:6307169 4.60E-215 dispersed
Cco11g0144 Cco-Chr11:1496493 Cco09g0216 Cco-Chr9:1916017 1.60E-228 transposed
Cco06g1175 Cco-Chr6:20996208 Cco09g0216 Cco-Chr9:1916017 5.80E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0216 K17471 - csv:101203079 1226.08