Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0226 ATGGAGATCAAAGAAAAGAAGAGAATTTCAAGTATCTCCTCTCCATTAATGTCATCCTCTTCGATGGCTATCCTCCTGGTTTTTCTTTGTTTCATTCTTAGCGATCCCAGCACAGCATTCGTAGCCGGGGCGGGCACTTCCTTCATTCCCAAAGATAATTTTCTCATTGACTGTGGTGCCAACAAGGAACTTGGTGCACTCCCTGATGGAAGAGTGTTCAAAACTGATGAGCAATCCAAGCAATTCTTAGATGCCAAGGATGATATCATAGCAACCGCTGCACCGGAGAAGAAGGCACCGTCCCCGGTCGATTTGACAGCAAGAGTTTTCCTCCAAGAAGCTACTTACATTTTTCAGATGGCAGAGCCTGGATGGCATTGGGTGCGCCTACATTTCATGCCTGTTAAAAGCAATGACTTCGATCTCTTGCAGGCTAAATTTTCAGTAGCTACTGAAAAATATGTGTTGCTTCACAGCTTCAACATCAACAATGAATCCACATTTGTTCTCAAGGAGTTTCTCCTCAATATCACTGAACCAAAACTGTCAATCAAGTTCTTCCCTTTGAGGAACTCAGCCGCTTTCATCAATGCCATCGAGGTCGTTTCGGCTCCGGTGGACTTGATTGCTGACTCCAATGTGGAGCTGTCTCCAGTTGGGACTATTGAGGGCCTGACGAAATATGCATTTCAGACATTGTATAGGTTAAACATGGGAGGACCTATAATCAATCCAAGAAATGACACTCTTGGGAGGACATGGGAGACAGATGAAGTTTACAGGACACCCAAAGCTGCTGGTAGAAATGTGGTTGTTGAGACCAACACCATCAAATACCAAGGAGGATTGAAAGAAACAGGCATGTTAATTGCTCCTCCAAGTGTTTATGCAAGTGCAGTTCAAATGGGAGATGCTCAAGTTAGTGTACCAAATTTCAATATCACATGGAAATTTGAGGCAGATCCCTCATTTGGGTATCTAATTCGCTTCCATTTCTGTGACATTGTCAGCAAAGTACTCAATAATCTGTATTTTAATGTATATGTGAACGGGAAGGCTGCCATAACCAACTTGGATTTGTCACACAAGCTAGGAAGTTTGGCAACTGCATACTACAAGGATGTTGTGGTTAATGCTTCCCTGATTGTAGATGGACTGACAGTTCAAATTAGTCCAGCTAATGTCGAAACCGGTGATGCGAATGCCATTCTAAATGGCATAGAGGTATTGAAAATAAGCAATTCTGTTAATAGTCTGGATGGAGAATTTGGAGTGGATGGTAGGTCGGCAAATGGGTCTAACCGTGGCACGGTCGCGGCTGTTGGGTTTGCGATGATGTTTGGGGCATTTGTTGGGCTCGGTGCCATGGTGATGAAATGGCATAAAAGGCCTCAAGATTGGCAGAAGAGGAACAGTTTCTCTTCCTGGTTGCTTCCTGTACATGCTGGTGACTCAAGCTTTATGACAAGTAAGACTTCATATGGGTCACACAAGACCAACATTTACTCCTCTACTTTAGGCCTTGGTAGGTTCTTCACTTTCGCAGAACTACAAGAAGCCACAAAGAACTTTGATCCCAATTCAATAATTGGTGTTGGTGGGTTTGGAAATGTGTACCTTGGAGTGATTGATGAAGGGACCAAAGTTGCAGTTAAGAGAGGAAATCCACAATCTGAACAAGGCATAACAGAATTCCAAACAGAAATTCAAATGCTTTCCAAACTCAGACACAGGCATTTGGTTTCTTTGATCGGTTACTGTGATGAAAACGCTGAAATGATCTTGGTATATGAGTTCATGTCAAATGGCCCATTCAGAGATCACTTATATGGAAAGGACTTGTCTCCATTGTCATGGAAGCAAAGGCTAGAGATCTGTATCGGAGCGGCTCGAGGCCTTCATTACCTTCACACAGGAACAGCACAGGGAATCATCCACCGTGATGTCAAAACAACCAACATTTTACTTGACGAAAACTTCACCGCCAAAGTCGCCGATTTCGGGCTGTCAAAGGATGCTCCAATGGGGCAAGGACATGTCAGTACCGCAGTGAAGGGAAGTTTTGGATATTTGGATCCAGAGTACTTTAGGAGGCAACAGTTGACAGAAAAATCAGATGTTTATTCCTTTGGAGTTGTTCTGCTTGAGGCTTTGTGTGCAAGGCCAGCAATCAACCCATCTTTGACAAGAGAACAAGTGAACTTGGCTGATTGGGCAATGCAATGTAAGAAAAAAGGGTGTTTGGAAAAGATAATGGATCCCCTTCTAATTGGAGCCATAAATCCTGAGTCCATGAAGAAGTTTGCAGAAGCAGCAGAGAAGTGTCTTGCTGAACATGGTGTAGATAGGCCAAGCATGGGGGATGTATTGTGGAATTTGGAGTATGCATTACAACTTCAAGAAGCATTCTCACAAGGCAAGACTGAAGATGAAAACAAAGCTGCAGGTACAGCAACCGTCGCCCCCACTACCCCTACCACTGTCGATGCTTCGACAAATGCACCGAACTCCGACAACCGCCCTGTCGTGCAGCCAGAACAGAATAGGCAACCAGCAGAGGTACAAGCCATTGATGATCACTCAGGAAGTGCAATGTTTGCTCATTTTTCTAATCTCAATGGTAGATGA 2628 43.95 MEIKEKKRISSISSPLMSSSSMAILLVFLCFILSDPSTAFVAGAGTSFIPKDNFLIDCGANKELGALPDGRVFKTDEQSKQFLDAKDDIIATAAPEKKAPSPVDLTARVFLQEATYIFQMAEPGWHWVRLHFMPVKSNDFDLLQAKFSVATEKYVLLHSFNINNESTFVLKEFLLNITEPKLSIKFFPLRNSAAFINAIEVVSAPVDLIADSNVELSPVGTIEGLTKYAFQTLYRLNMGGPIINPRNDTLGRTWETDEVYRTPKAAGRNVVVETNTIKYQGGLKETGMLIAPPSVYASAVQMGDAQVSVPNFNITWKFEADPSFGYLIRFHFCDIVSKVLNNLYFNVYVNGKAAITNLDLSHKLGSLATAYYKDVVVNASLIVDGLTVQISPANVETGDANAILNGIEVLKISNSVNSLDGEFGVDGRSANGSNRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDSSFMTSKTSYGSHKTNIYSSTLGLGRFFTFAELQEATKNFDPNSIIGVGGFGNVYLGVIDEGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEFMSNGPFRDHLYGKDLSPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVADFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPSLTREQVNLADWAMQCKKKGCLEKIMDPLLIGAINPESMKKFAEAAEKCLAEHGVDRPSMGDVLWNLEYALQLQEAFSQGKTEDENKAAGTATVAPTTPTTVDASTNAPNSDNRPVVQPEQNRQPAEVQAIDDHSGSAMFAHFSNLNGR 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2016225 2018852 + CcPI632755_09g002260.1 Cco09g0226 186683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0226 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0226 875 CDD STKc_IRAK 530 794 - -
Cco09g0226 875 Gene3D Phosphorylase Kinase; domain 1 485 599 - -
Cco09g0226 875 SMART serkin_6 524 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0226 875 SUPERFAMILY Protein kinase-like (PK-like) 498 794 IPR011009 -
Cco09g0226 875 FunFam Receptor-like protein kinase FERONIA 229 414 - -
Cco09g0226 875 FunFam receptor-like protein kinase FERONIA 488 599 - -
Cco09g0226 875 Pfam Protein tyrosine and serine/threonine kinase 529 788 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0226 875 PANTHER OS07G0166700 PROTEIN 513 801 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Cco09g0226 875 MobiDBLite consensus disorder prediction 817 851 - -
Cco09g0226 875 ProSiteProfiles Protein kinase domain profile. 524 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0226 875 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524(InterPro)
Cco09g0226 875 Pfam Malectin-like domain 56 411 IPR024788 -
Cco09g0226 875 FunFam Putative receptor-like protein kinase 53 205 - -
Cco09g0226 875 FunFam Receptor-like protein kinase FERONIA 600 814 - -
Cco09g0226 875 Gene3D Transferase(Phosphotransferase) domain 1 600 821 - -
Cco09g0226 875 Gene3D - 228 414 - -
Cco09g0226 875 Gene3D - 53 207 - -
Cco09g0226 875 MobiDBLite consensus disorder prediction 806 855 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0226 Cco-Chr9:2016225 Cco11g1371 Cco-Chr11:26544838 9.90E-149 dispersed
Cco04g1831 Cco-Chr4:33123354 Cco09g0226 Cco-Chr9:2016225 2.60E-65 transposed
Cco06g1798 Cco-Chr6:28376949 Cco09g0226 Cco-Chr9:2016225 2.10E-255 transposed
Cco11g1892 Cco-Chr11:31631667 Cco09g0226 Cco-Chr9:2016225 5.60E-226 transposed
Cco11g0264 Cco-Chr11:2575393 Cco09g0226 Cco-Chr9:2016225 8.30E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87077 PF12819 Malectin_like 7.10E-37 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0226 - - - 0.0