Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0233 ATGAGAAAAGAAGAAAATCATATCAGGGCTAATATTGGGGAATTCCCTGGTAGAATTACACGTGCTCGGGCTGCTGCATTTAGTGCATCAGCACAGCTGCCTCCAAAAGTTCCTGCACATCATCAAGAGAGGCGGGTTGCCCGAGCTAATCTGAAAAGAGCTGCTTCGGAAGAAAATAGCTGCCATTCTATTGGTAAATCAGCTCGACCATGTAAAAGGAGGGCTGTGCTTCAGGATGTCAGCAATATAGGCTGTGAACCTTCGTACTCAAATTGTTTCAATGCAGCTAAAATTGAGCCCAATAGTAGTAAGCCGACAATCAGAAACCATCTCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTGGCTAACTCCAAGGTTCCTCTAGGTCTTAGAACTAAAGGAGCTTCATCAGTTGGTGGGGCTTACTCCAAGCCTCTTGATCTTAGAACACAAGGTCTACAATCAAATGTCAAATCAAAAGCCAAGTTGAAAGTTGAGCATTCAAGTAATTCTGAAGACCTGGATGCACATCATCGGGTAAGTGGTATAAAGGAAGAGGTCACAAGTGATTTTCGGGATAATAATTGGAGGTCTCGAAGTCCTTCAGAGTCTCAAAATTTTCAAAATAAAGATAAAGTGTTGCTTCTGGGGACAAAAAGCAACCTGGACATTGCAGACATTGATTGTAATGACAGAGATGCTCAGCTGTGCACTGTCTATGCCCAGGATATCTATAACAATTTACGTGTAGCTGAGCTAACCAGAAGACCACGTCCCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTGTCGGAGGAATACAAGTTAGTACCAGATACACTCTACCTAACTGTTTTTTTCATCGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCTCTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTACTGAATATGGAAGGTCAAATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACATATAAGACCCCTAGTCTTGAACTCGAGTGCCTCGCCAACTATCTAGCTGAATTAACACTGGTTGACTACAGATTCCTGAATTTTCTTCCCTCAGTTATAGCTGCATCAGCTGTATTTCTTTCCAAATGGACGTTGGATCAGTCGGGTCACCCATGGAATTCAACACTGGAATATTATACCTCATATAAAGCATCAGATCTGAAACAAACTGTTGTTGCTTTACAAGATTTACAGTTGAACACCAACGGTTGTCCACTTAGTTCGATTCGTGTCAAGTATCGGCAAGAAAAGAATAAGAATATACGAGATTTTGACGCTAAAGTCGTTGGATGGGGTCGGGGTCAGGTATCTATCATAGACATCAAAGGCACAAATTTGACAGGAATACCTGCACCTGTAGCTCCCATCATCACACCCATCTTATAG 1593 42.18 MRKEENHIRANIGEFPGRITRARAAAFSASAQLPPKVPAHHQERRVARANLKRAASEENSCHSIGKSARPCKRRAVLQDVSNIGCEPSYSNCFNAAKIEPNSSKPTIRNHLKKSKGASSVGVANSKVPLGLRTKGASSVGGAYSKPLDLRTQGLQSNVKSKAKLKVEHSSNSEDLDAHHRVSGIKEEVTSDFRDNNWRSRSPSESQNFQNKDKVLLLGTKSNLDIADIDCNDRDAQLCTVYAQDIYNNLRVAELTRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYRFLNFLPSVIAASAVFLSKWTLDQSGHPWNSTLEYYTSYKASDLKQTVVALQDLQLNTNGCPLSSIRVKYRQEKNKNIRDFDAKVVGWGRGQVSIIDIKGTNLTGIPAPVAPIITPIL 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2091187 2098477 + CcPI632755_09g002330.1 Cco09g0233 186690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0233 530 PANTHER CYCLINS 224 483 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco09g0233 530 Pfam Cyclin, N-terminal domain 244 371 IPR006671 -
Cco09g0233 530 SUPERFAMILY Cyclin-like 373 489 IPR036915 -
Cco09g0233 530 CDD CYCLIN_AtCycA-like_rpt2 373 486 - -
Cco09g0233 530 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
Cco09g0233 530 SMART cyclin_7 280 364 IPR013763 -
Cco09g0233 530 SMART cyclin_7 377 465 IPR013763 -
Cco09g0233 530 FunFam Mitotic cyclin 6 258 358 - -
Cco09g0233 530 MobiDBLite consensus disorder prediction 161 182 - -
Cco09g0233 530 SMART Cyclin_C_2 373 496 IPR004367 -
Cco09g0233 530 CDD CYCLIN_AtCycA_like_rpt1 234 369 - -
Cco09g0233 530 Pfam Cyclin, C-terminal domain 373 492 IPR004367 -
Cco09g0233 530 Gene3D - 244 490 - -
Cco09g0233 530 PIRSF Cyclin_A_B_D_E 32 498 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cco09g0233 530 FunFam Cyclin A1 360 491 - -
Cco09g0233 530 Gene3D - 258 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1952 Cco-Chr5:28578342 Cco09g0233 Cco-Chr9:2091187 3.00E-107 dispersed
Cco05g2298 Cco-Chr5:31630106 Cco09g0233 Cco-Chr9:2091187 6.30E-76 dispersed
Cco08g0731 Cco-Chr8:18900794 Cco09g0233 Cco-Chr9:2091187 1.30E-81 dispersed
Cco08g1812 Cco-Chr8:29187366 Cco09g0233 Cco-Chr9:2091187 9.90E-74 dispersed
Cco09g0233 Cco-Chr9:2091187 Cco11g1919 Cco-Chr11:31872970 8.00E-45 dispersed
Cco08g1451 Cco-Chr8:26366876 Cco09g0233 Cco-Chr9:2091187 4.90E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0233 K06627 - csv:101222299 884.789