Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0250 ATGACTATAGATCAGCTCACCAACAATTTCAAAGCTAATTCATTTCCTCGAAACAACTATCCAAATTGCAAACCAAAAAGAGTTGATCTCTGGAGTTTTCATCAGTTCCATAACAGAAGGTCAAGGTGCAATTTGGGAATGGCGACTAGCAATGAAATCATGTTTAATTGCTTTGTTCTGGTTTTGCTTCTGCCGTTTTCAAACGCCCAATCTGACGTATTGGCACAAGGCCAAAAACTAACACCTGAGTCTACGCTAATTTCGGCCATGGAGACTTTTTCGCTCGGGTTTTACAGTCCTAGCCTATTGAACAACAGTTACATAGCAATTTGGTACACTAGAGATTCACAGAATCCAGTGTGGATTGCCAATCGTAATTTTGCATTTCCCAGAGATTTTGGGACACCCTGTCTCACAATTGACAGCAATGGCAGCTTGAAGATTGTCCCCAAAGAAGGAAAAGGAAGAAATGGCTATAATTTCTATCTCTTTGAAGTTGAAGAACCCACCAACAGCAGCGCCATTCTTCTAGATAGTGGCAACTTTGTATTGGGTGTGTTGAATCCAGATCGGTCAATTAAGCGACAGCTATGGCAGAGTTTTGATCATCCAACAGACACTCTTCTTCCTGGGATGAAGCTTGGGATCAACCACAAAACTGGAGCCACTTGGTCTATAACATCCCGAAGAGGTGACTATTCTGTTCTATCAGGTTCTTTTACCCTCATAATGAATCCCAACAATACAAATCAGTTGCTGATATTACTTAGAGGAGCCGTTTTCTGGACCAGTGGGAACTGGCAGGACGGTCAATTTGAGTTCTCGGAAGAACTTTCCAACATTAACAATCGAGAATTCGTGTTCAGTCGATTTTCAAATGAGAACGAGACATTTTTCAATTACTCCACCTCCAATCTCTTTCAATTGCCTAACCAGAACACGGGATTGATTGAAGTTCAAACCTTGTTGAGATTGGGGAACGACGGGAAATTGGTGGGGCATAATTCGAATTCAGAAGTTGAATGTCCCTATTTTGAAAATGAGTTGTTTGAGCCTAAGAATGTTTCTGAAGGTGGGTGTGTGGGGAAAACGCAGCACAAAGTACCCGAGTGCCGAAATCCACCAAAACAGTTTTCCACTTCACAGAGATTTGGAAACATGGAGGGAAATGGTTCGAGGTTCAGAGAAAGTGAGAACCTGACCATTTATGATTGCGAAAAGAATTGCATTTCAAGCTGTGATTGCATTGCCTTTAGTTCTACAAACGAAGAAGGCACTGGCTGTGAGATGTGGAATGTCGGCGCAACGTTTATTCCAGTGGAGGGAGGCAAACGGATTATTTGGTCTCTTGAGGTGACTGAAGGGAAAGCTCCTGCAGGAGAAAAAAGGGATTCTGAACATCAAAATTTTCTACAAGAAATGGGGGCCAAATCTAAGAGTATTAACATTCTAACAATGAACAAGCAAAGAAGAGACTTAAAGAACTCCGAATTGCAGTTTTTCAGTTTTAGAAGTATAGTTTCTACAACAAACAATTTCGCTGACGATTGTAAGCCCGAGCTTATAAGAATTAAAAGCCTAAGCTATGTTTTCACTTCTCAAGAGAGCAACATGAGTTCGCTTTTGCAGGGAAGTTTGGCCGATGGCCAAGAAGTTGCCATTAAAAGACTTTCAAAAAATTCTGGACAAGGGCTAGAGGAGTTCAAGAATGAAGTCATACTGATTGCCAAACTGCAACACACTAATCTGGTTAGGCTTATAGGTTGCTGCATTCATAAAGAAGAGAGGTTATTGGTGTATGAGTACATGCCCAACAAAAGCCTTGACTCCTTCCTCTTTGATCCAGTTAGAAAGCTAATTCTAGATTGGGACAAATGCCTACACATCATCCAAGGGATAGTTCAAGGACTACTTTACCTTCACAACTACTCGAGATTACGAATAGTTCATCAAGATTTAAAAGTCAGCAACATCTTGCTTGATGATGAGATGAATGCAAAAATATCAGATTTTGGCATGGCCAAAATCTTTAATCTCACAGAGGAAGAAGCAAATACTAATCACATTGTTGGTACATTTGGTTATATAGCACCTGAAAATGCAATGGGGGGCATTTCCTCCCTAAAATCAGATGTTTACAGCTTTGGAGCATGGGAAGTGTGGGTGAATGGTAGAGGAGAAGAATTAATTGATCCAACTTTGTGCAACTCTGATCAGAAACCAAAGGCTCTAAGATGCATCCATGTTAGTCTTCTATGCGTCCAACAAATACCAACAGATAGACCTACCATGCTTGATGTTTATTTCATGATTCAGAATGATTCTACTCAACTTCCATTGCCAAAACAACCTCCGTTTTTCATCACCCAGAACTCCAAACTGGAAGTTGTGACAGATGGCATTGAACTCAAATCAGAATCAACAACAGAAATATGTTCTTCAAATAGTATGTCAGTTTCCATGATGATTGCGAGATGA 2478 40.52 MTIDQLTNNFKANSFPRNNYPNCKPKRVDLWSFHQFHNRRSRCNLGMATSNEIMFNCFVLVLLLPFSNAQSDVLAQGQKLTPESTLISAMETFSLGFYSPSLLNNSYIAIWYTRDSQNPVWIANRNFAFPRDFGTPCLTIDSNGSLKIVPKEGKGRNGYNFYLFEVEEPTNSSAILLDSGNFVLGVLNPDRSIKRQLWQSFDHPTDTLLPGMKLGINHKTGATWSITSRRGDYSVLSGSFTLIMNPNNTNQLLILLRGAVFWTSGNWQDGQFEFSEELSNINNREFVFSRFSNENETFFNYSTSNLFQLPNQNTGLIEVQTLLRLGNDGKLVGHNSNSEVECPYFENELFEPKNVSEGGCVGKTQHKVPECRNPPKQFSTSQRFGNMEGNGSRFRESENLTIYDCEKNCISSCDCIAFSSTNEEGTGCEMWNVGATFIPVEGGKRIIWSLEVTEGKAPAGEKRDSEHQNFLQEMGAKSKSINILTMNKQRRDLKNSELQFFSFRSIVSTTNNFADDCKPELIRIKSLSYVFTSQESNMSSLLQGSLADGQEVAIKRLSKNSGQGLEEFKNEVILIAKLQHTNLVRLIGCCIHKEERLLVYEYMPNKSLDSFLFDPVRKLILDWDKCLHIIQGIVQGLLYLHNYSRLRIVHQDLKVSNILLDDEMNAKISDFGMAKIFNLTEEEANTNHIVGTFGYIAPENAMGGISSLKSDVYSFGAWEVWVNGRGEELIDPTLCNSDQKPKALRCIHVSLLCVQQIPTDRPTMLDVYFMIQNDSTQLPLPKQPPFFITQNSKLEVVTDGIELKSESTTEICSSNSMSVSMMIAR 825
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 2272294 2275727 - CcPI632755_09g002500.1 Cco09g0250 186707
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0250 825 Gene3D - 65 202 IPR036426 -
Cco09g0250 825 MobiDBLite consensus disorder prediction 374 391 - -
Cco09g0250 825 Pfam Protein tyrosine and serine/threonine kinase 548 725 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0250 825 Gene3D Transferase(Phosphotransferase) domain 1 603 779 - -
Cco09g0250 825 SUPERFAMILY Protein kinase-like (PK-like) 547 794 IPR011009 -
Cco09g0250 825 SMART blect_4 71 204 IPR001480 -
Cco09g0250 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 109 268 IPR036426 -
Cco09g0250 825 ProSiteProfiles Protein kinase domain profile. 516 825 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0250 825 Gene3D Phosphorylase Kinase; domain 1 486 602 - -
Cco09g0250 825 CDD B_lectin 80 204 IPR001480 -
Cco09g0250 825 MobiDBLite consensus disorder prediction 372 391 - -
Cco09g0250 825 ProSiteProfiles PAN/Apple domain profile. 371 452 IPR003609 -
Cco09g0250 825 SMART serkin_6 521 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0250 825 FunFam Cysteine-rich receptor-like protein kinase 11 529 602 - -
Cco09g0250 825 Pfam D-mannose binding lectin 120 230 IPR001480 -
Cco09g0250 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0250 825 ProSiteProfiles Bulb-type lectin domain profile. 71 197 IPR001480 -
Cco09g0250 825 Pfam PAN-like domain 398 432 IPR003609 -
Cco09g0250 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 603 694 - -
Cco09g0250 825 PIRSF SRK 717 825 IPR024171 GO:0004674(InterPro)
Cco09g0250 825 PIRSF SRK 46 481 IPR024171 GO:0004674(InterPro)
Cco09g0250 825 PIRSF SRK 537 716 IPR024171 GO:0004674(InterPro)
Cco09g0250 825 PIRSF SRK 446 518 IPR024171 GO:0004674(InterPro)
Cco09g0250 825 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 64 784 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0207 Cco-Chr9:1841038 Cco09g0250 Cco-Chr9:2272294 7.00E-222 dispersed
Cco09g0250 Cco-Chr9:2272294 Cco10g0590 Cco-Chr10:7796754 2.60E-98 dispersed
Cco09g0250 Cco-Chr9:2272294 Cco05g1723 Cco-Chr5:25503525 5.00E-110 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87078 PF00069 Pkinase 4.90E-35 CL0016 Cco PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0250 - - - 0.0