Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0250 | ATGACTATAGATCAGCTCACCAACAATTTCAAAGCTAATTCATTTCCTCGAAACAACTATCCAAATTGCAAACCAAAAAGAGTTGATCTCTGGAGTTTTCATCAGTTCCATAACAGAAGGTCAAGGTGCAATTTGGGAATGGCGACTAGCAATGAAATCATGTTTAATTGCTTTGTTCTGGTTTTGCTTCTGCCGTTTTCAAACGCCCAATCTGACGTATTGGCACAAGGCCAAAAACTAACACCTGAGTCTACGCTAATTTCGGCCATGGAGACTTTTTCGCTCGGGTTTTACAGTCCTAGCCTATTGAACAACAGTTACATAGCAATTTGGTACACTAGAGATTCACAGAATCCAGTGTGGATTGCCAATCGTAATTTTGCATTTCCCAGAGATTTTGGGACACCCTGTCTCACAATTGACAGCAATGGCAGCTTGAAGATTGTCCCCAAAGAAGGAAAAGGAAGAAATGGCTATAATTTCTATCTCTTTGAAGTTGAAGAACCCACCAACAGCAGCGCCATTCTTCTAGATAGTGGCAACTTTGTATTGGGTGTGTTGAATCCAGATCGGTCAATTAAGCGACAGCTATGGCAGAGTTTTGATCATCCAACAGACACTCTTCTTCCTGGGATGAAGCTTGGGATCAACCACAAAACTGGAGCCACTTGGTCTATAACATCCCGAAGAGGTGACTATTCTGTTCTATCAGGTTCTTTTACCCTCATAATGAATCCCAACAATACAAATCAGTTGCTGATATTACTTAGAGGAGCCGTTTTCTGGACCAGTGGGAACTGGCAGGACGGTCAATTTGAGTTCTCGGAAGAACTTTCCAACATTAACAATCGAGAATTCGTGTTCAGTCGATTTTCAAATGAGAACGAGACATTTTTCAATTACTCCACCTCCAATCTCTTTCAATTGCCTAACCAGAACACGGGATTGATTGAAGTTCAAACCTTGTTGAGATTGGGGAACGACGGGAAATTGGTGGGGCATAATTCGAATTCAGAAGTTGAATGTCCCTATTTTGAAAATGAGTTGTTTGAGCCTAAGAATGTTTCTGAAGGTGGGTGTGTGGGGAAAACGCAGCACAAAGTACCCGAGTGCCGAAATCCACCAAAACAGTTTTCCACTTCACAGAGATTTGGAAACATGGAGGGAAATGGTTCGAGGTTCAGAGAAAGTGAGAACCTGACCATTTATGATTGCGAAAAGAATTGCATTTCAAGCTGTGATTGCATTGCCTTTAGTTCTACAAACGAAGAAGGCACTGGCTGTGAGATGTGGAATGTCGGCGCAACGTTTATTCCAGTGGAGGGAGGCAAACGGATTATTTGGTCTCTTGAGGTGACTGAAGGGAAAGCTCCTGCAGGAGAAAAAAGGGATTCTGAACATCAAAATTTTCTACAAGAAATGGGGGCCAAATCTAAGAGTATTAACATTCTAACAATGAACAAGCAAAGAAGAGACTTAAAGAACTCCGAATTGCAGTTTTTCAGTTTTAGAAGTATAGTTTCTACAACAAACAATTTCGCTGACGATTGTAAGCCCGAGCTTATAAGAATTAAAAGCCTAAGCTATGTTTTCACTTCTCAAGAGAGCAACATGAGTTCGCTTTTGCAGGGAAGTTTGGCCGATGGCCAAGAAGTTGCCATTAAAAGACTTTCAAAAAATTCTGGACAAGGGCTAGAGGAGTTCAAGAATGAAGTCATACTGATTGCCAAACTGCAACACACTAATCTGGTTAGGCTTATAGGTTGCTGCATTCATAAAGAAGAGAGGTTATTGGTGTATGAGTACATGCCCAACAAAAGCCTTGACTCCTTCCTCTTTGATCCAGTTAGAAAGCTAATTCTAGATTGGGACAAATGCCTACACATCATCCAAGGGATAGTTCAAGGACTACTTTACCTTCACAACTACTCGAGATTACGAATAGTTCATCAAGATTTAAAAGTCAGCAACATCTTGCTTGATGATGAGATGAATGCAAAAATATCAGATTTTGGCATGGCCAAAATCTTTAATCTCACAGAGGAAGAAGCAAATACTAATCACATTGTTGGTACATTTGGTTATATAGCACCTGAAAATGCAATGGGGGGCATTTCCTCCCTAAAATCAGATGTTTACAGCTTTGGAGCATGGGAAGTGTGGGTGAATGGTAGAGGAGAAGAATTAATTGATCCAACTTTGTGCAACTCTGATCAGAAACCAAAGGCTCTAAGATGCATCCATGTTAGTCTTCTATGCGTCCAACAAATACCAACAGATAGACCTACCATGCTTGATGTTTATTTCATGATTCAGAATGATTCTACTCAACTTCCATTGCCAAAACAACCTCCGTTTTTCATCACCCAGAACTCCAAACTGGAAGTTGTGACAGATGGCATTGAACTCAAATCAGAATCAACAACAGAAATATGTTCTTCAAATAGTATGTCAGTTTCCATGATGATTGCGAGATGA | 2478 | 40.52 | MTIDQLTNNFKANSFPRNNYPNCKPKRVDLWSFHQFHNRRSRCNLGMATSNEIMFNCFVLVLLLPFSNAQSDVLAQGQKLTPESTLISAMETFSLGFYSPSLLNNSYIAIWYTRDSQNPVWIANRNFAFPRDFGTPCLTIDSNGSLKIVPKEGKGRNGYNFYLFEVEEPTNSSAILLDSGNFVLGVLNPDRSIKRQLWQSFDHPTDTLLPGMKLGINHKTGATWSITSRRGDYSVLSGSFTLIMNPNNTNQLLILLRGAVFWTSGNWQDGQFEFSEELSNINNREFVFSRFSNENETFFNYSTSNLFQLPNQNTGLIEVQTLLRLGNDGKLVGHNSNSEVECPYFENELFEPKNVSEGGCVGKTQHKVPECRNPPKQFSTSQRFGNMEGNGSRFRESENLTIYDCEKNCISSCDCIAFSSTNEEGTGCEMWNVGATFIPVEGGKRIIWSLEVTEGKAPAGEKRDSEHQNFLQEMGAKSKSINILTMNKQRRDLKNSELQFFSFRSIVSTTNNFADDCKPELIRIKSLSYVFTSQESNMSSLLQGSLADGQEVAIKRLSKNSGQGLEEFKNEVILIAKLQHTNLVRLIGCCIHKEERLLVYEYMPNKSLDSFLFDPVRKLILDWDKCLHIIQGIVQGLLYLHNYSRLRIVHQDLKVSNILLDDEMNAKISDFGMAKIFNLTEEEANTNHIVGTFGYIAPENAMGGISSLKSDVYSFGAWEVWVNGRGEELIDPTLCNSDQKPKALRCIHVSLLCVQQIPTDRPTMLDVYFMIQNDSTQLPLPKQPPFFITQNSKLEVVTDGIELKSESTTEICSSNSMSVSMMIAR | 825 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2272294 | 2275727 | - | CcPI632755_09g002500.1 | Cco09g0250 | 186707 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0250 | 825 | Gene3D | - | 65 | 202 | IPR036426 | - | |
Cco09g0250 | 825 | MobiDBLite | consensus disorder prediction | 374 | 391 | - | - | |
Cco09g0250 | 825 | Pfam | Protein tyrosine and serine/threonine kinase | 548 | 725 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g0250 | 825 | Gene3D | Transferase(Phosphotransferase) domain 1 | 603 | 779 | - | - | |
Cco09g0250 | 825 | SUPERFAMILY | Protein kinase-like (PK-like) | 547 | 794 | IPR011009 | - | |
Cco09g0250 | 825 | SMART | blect_4 | 71 | 204 | IPR001480 | - | |
Cco09g0250 | 825 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 109 | 268 | IPR036426 | - | |
Cco09g0250 | 825 | ProSiteProfiles | Protein kinase domain profile. | 516 | 825 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0250 | 825 | Gene3D | Phosphorylase Kinase; domain 1 | 486 | 602 | - | - | |
Cco09g0250 | 825 | CDD | B_lectin | 80 | 204 | IPR001480 | - | |
Cco09g0250 | 825 | MobiDBLite | consensus disorder prediction | 372 | 391 | - | - | |
Cco09g0250 | 825 | ProSiteProfiles | PAN/Apple domain profile. | 371 | 452 | IPR003609 | - | |
Cco09g0250 | 825 | SMART | serkin_6 | 521 | 769 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0250 | 825 | FunFam | Cysteine-rich receptor-like protein kinase 11 | 529 | 602 | - | - | |
Cco09g0250 | 825 | Pfam | D-mannose binding lectin | 120 | 230 | IPR001480 | - | |
Cco09g0250 | 825 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 648 | 660 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g0250 | 825 | ProSiteProfiles | Bulb-type lectin domain profile. | 71 | 197 | IPR001480 | - | |
Cco09g0250 | 825 | Pfam | PAN-like domain | 398 | 432 | IPR003609 | - | |
Cco09g0250 | 825 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase B120 | 603 | 694 | - | - | |
Cco09g0250 | 825 | PIRSF | SRK | 717 | 825 | IPR024171 | GO:0004674(InterPro) | |
Cco09g0250 | 825 | PIRSF | SRK | 46 | 481 | IPR024171 | GO:0004674(InterPro) | |
Cco09g0250 | 825 | PIRSF | SRK | 537 | 716 | IPR024171 | GO:0004674(InterPro) | |
Cco09g0250 | 825 | PIRSF | SRK | 446 | 518 | IPR024171 | GO:0004674(InterPro) | |
Cco09g0250 | 825 | PANTHER | BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN | 64 | 784 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g0207 | Cco-Chr9:1841038 | Cco09g0250 | Cco-Chr9:2272294 | 7.00E-222 | dispersed | |
Cco09g0250 | Cco-Chr9:2272294 | Cco10g0590 | Cco-Chr10:7796754 | 2.60E-98 | dispersed | |
Cco09g0250 | Cco-Chr9:2272294 | Cco05g1723 | Cco-Chr5:25503525 | 5.00E-110 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87078 | PF00069 | Pkinase | 4.90E-35 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0250 | - | - | - | 0.0 |