Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0266 ATGAGCCAATTGATTTGGTTGACTCCGACGATGGCGAAAAACACAAGTTGCCTCCCACTACTCAACCGAATCATTGGGGTTTCAGGCTGCTTAAACTTAGAGGGTTTTCAGATGACATATTTTCCTGGTTTAAGTAATCAAAGAGACTCCATGTTAGGTGATCAGAAACTTGGTTCTTCTTGCCAAGAACAGCCTCTTTGTTCTGGGAATTTGATGATGTTCATGAATCAAGACCCTTCTTGCAGAGATTATTCAGAGATTTTTTCTGGGGTTTCTTCAAACTATGTTGAAACTGTGGGAGATAGAAGTAATGTTGAAATGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGACTCAAATTTCCCATGTCAAGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCTATGCCTTCATTTCCTCACCAATATCAGACCCCTGCTATGCCTTCTTCATTCATCAGTAATGGACCTCCTTTGATCTTCGAGAAGAGGCCGAATCTGAAACCTTCTATAACTGATGCGAAAAATGGCATGTATCTAGCGGTGGGTTCTGGATATTCGACATTGAATTCGGTATACATCGAAGCTGCACAGCAGTTGCTTGACGAAATGGTTAGCATCCGCGAAGCTTTGAAAGAGTTGAAGTCTAAGAAACTCAAAGCTTCCAATGGTTTGGGCGTTGATTCCTGCAGAGAAAATGATGGTGGATCTAATGATCTGACTGGGGAGATGTGTTGCAATGTGAGGCAGTCGCCGATTGCCATTCCGTCAGGGGATCTATCGCCTACCGAACGTCAGGACTTGAAGAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAGGCAATATTACCAACAGCTGCAATATTTGGCGTCGTCTTTTGACATGGTAGCAGGCCGAGGGGCTGCAGATTTCTACACTGCACTTGCACACCAAACTATTTCGTGCCACTTTCGCCGCTTGCGAGACGCAATAAATGCACAGATTGAGGTCACCAGGAGAACCTTGGGGGAGCAAGATGCTTTACATTCTGGTCAAGAGGGCATTCCTCGTCTCCGCTTTGTCGACCAACACCTCAGGCAACAGAGAGCTCTTCAGCAGCTTGGTGTCATGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCCGAAAGTTCCGTGTCAATTCTTCGCGCTTGGCTGTTCGAACACTTCCTCCATCCATATCCCAAGGACTCCGAGAAACTTAAGCTAGCTAGACAAACTGGCCTGACCAGAAACCAAGTCGCAAACTGGTTTATAAATGCACGTGTTCGGCTATGGAAACCAATGGTAGAGGAGATGTACAAAGAAGAATTTGGAGACTCCAACATTGATATCAAATCCTCACCAGAAAATGCATCCAAAGTATCATGGAACAATTCACTATTCTCCGAAGATAAGGGAGGAGACGAGATGCACGACAGCAGAAAATCTGCAGCAAACAACAGCGAGCGAGTCCTCTACCGCCCGTGTGCTACCGACGACATGATCAACTCAAGTAACTTCTCAATGGGAGGAGGAGGAGATGTTTCGCTTGCACTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGGATGTTTGGGAATAACAATAGAATGGTTGGTTCTGTGGAGCTTGAGGCACAAGATTTGCCATGTTTGGAACCAGAAAGACATCATCAATGCAGGCTCACAAGTTCAAATATGTTGCATGATTTTATTGGCCTGGATCTGTGTCGGTCTCATTCTTCCAAATCAACCACTAAGCTAAATTCAACTAACTTGCCTCCACATGCAGTGGCGGATTTTCACTCACTACTACTTCTTCTTCTTCTTCCTCCTTATCACTGTTTTCACTTCACTGCAATTTCGTCGCGAAGTGGGGGAGGTTTGAGTTATCTTCTTTCCAGCTCTTCAATTTTCTCTGATTTGTCCTTCCCAATTCTCCAGGTTGTCATATTACTTGGTTGA 2001 44.78 MSQLIWLTPTMAKNTSCLPLLNRIIGVSGCLNLEGFQMTYFPGLSNQRDSMLGDQKLGSSCQEQPLCSGNLMMFMNQDPSCRDYSEIFSGVSSNYVETVGDRSNVEMAFIPPVVGILDDSNFPCQGVSLSLSTHSPSVVSMPSFPHQYQTPAMPSSFISNGPPLIFEKRPNLKPSITDAKNGMYLAVGSGYSTLNSVYIEAAQQLLDEMVSIREALKELKSKKLKASNGLGVDSCRENDGGSNDLTGEMCCNVRQSPIAIPSGDLSPTERQDLKNKNSKLLSLLGEVDRRYRQYYQQLQYLASSFDMVAGRGAADFYTALAHQTISCHFRRLRDAINAQIEVTRRTLGEQDALHSGQEGIPRLRFVDQHLRQQRALQQLGVMPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNIDIKSSPENASKVSWNNSLFSEDKGGDEMHDSRKSAANNSERVLYRPCATDDMINSSNFSMGGGGDVSLALELKHCEGDEFGMFGNNNRMVGSVELEAQDLPCLEPERHHQCRLTSSNMLHDFIGLDLCRSHSSKSTTKLNSTNLPPHAVADFHSLLLLLLLPPYHCFHFTAISSRSGGGLSYLLSSSSIFSDLSFPILQVVILLG 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2388096 2393658 + CcPI632755_09g002660.1 Cco09g0266 186723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0266 666 Pfam Associated with HOX 194 336 IPR006563 -
Cco09g0266 666 SMART HOX_1 386 450 IPR001356 GO:0003677(InterPro)
Cco09g0266 666 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 155 485 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco09g0266 666 Gene3D - 383 460 - -
Cco09g0266 666 SMART prehox3 187 338 IPR006563 -
Cco09g0266 666 CDD homeodomain 386 447 IPR001356 GO:0003677(InterPro)
Cco09g0266 666 Pfam Homeobox KN domain 403 442 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco09g0266 666 Coils Coil 199 222 - -
Cco09g0266 666 ProSiteProfiles 'Homeobox' domain profile. 383 446 IPR001356 GO:0003677(InterPro)
Cco09g0266 666 SUPERFAMILY Homeodomain-like 387 453 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0266 Cco-Chr9:2388096 Cco11g0420 Cco-Chr11:4344386 7.60E-93 dispersed
Cco09g0266 Cco-Chr9:2388096 Cco10g1818 Cco-Chr10:31809157 5.70E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59893 PF07526 POX 1.10E-38 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0266 - - - 0.0