Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0308 ATGCATACTCGTATGGCTCAAAGTGAAGAAGGGAAGCAGAGGGTTCAAATGGGAGAGAGATTAGGAGGTTATGCTATGAATCTTCTTGGTATTTTACTTCCCATGTGGGTTTTCTCTTCCTTCTTCCCAATAATTGATGCCAGACCACACCTTGCTGGGTTTTCAATTTCTAGTACTGTTTTTGCTTCTCACACACATCCCATCTCTCTCATTGTTGCCAAAATGGAAGCTCAATCCCCAGGAGTTGCGGAGGTTAAAGTAGTTCACCACCAAGATTTGAACAAGAGAATTCTTATAGCATTGATTGTTTCTTCCACTCTTCTTGGAGTTATACTGCTGTTCCTTTCGTGTTTTTGGATATATCGTCGAAAAACGTTGAACCTTGATGATGGAAAATGTCAAAAGAATTTGGAGGCTTCGAAAGGGATGCCGCTAAATCCCATCATATCCAGATTTAACTCCTTGAGGTTGGCTAACTTTAAAGGTTCGGTTTCCACCATCGACTATAAACTGTTGGAAGCAGCAACTGACAACTTCAGCAAAAGCAATGTTTTGGGTGAAGGCGGTACGGGACATGTTTACAAAGCTTGCTTCAATGATAAATTGCTGGCAGCTGTGAAGAAAATGGACAATGGAGGACCGGACGCTGAAAGAGAATTCGAGAATGAGGTGAATTGGTTGTGTAAAATACGACATCAAAATATAATCAAACTCTTGGGGCACTGCATTCATGGCGAGACACGGTTTCTTGTTTACGAGATTATGCAGAATGGATCTTTGGAGTCTCAGTTGCACGGACCATCTCACGGATCGGCTTTAACTTGGCATATCCGGATGAAGATTGCTGTTGATGTTGCAAGAGGCTTGGAATATCTTCACGAACATCGAAGTCCTCCTGTTGTTCATCGGGATTTGAAATCGTCAAATATCCTTTTAGATTCAGACTTTAATGCCAAGCTCTCTGACTTCGGCCTTACTGTAAACTTGGGAGCTCAAAATAAAAACATAAAGCTCTCAGGAACTTTGGGTTATGTCGCCCCAGAGTACCTTTTAGACGGTAAACTAACAGATAAAAGTGATGTCTATGCGTTCGGAGTTGTTCTTTTGGAGCTTCTGACCGGGAAAAAACCTGTTGAGAAGATGGGACCTACTCAATCCCAATCTCTAGTTTCATGGGCAATCCCGCAGCTCAGTGACAGATCAAAGCTACCGAAAATTGTCGATCCTGTGATAAGGGACACGATGGACTTGAAGCACTTATACCAAGTTGCTGCTGTAGCTGTTTTATGTGTACAATCAGAACCGAGTTACCGACCGTTAGTTACCGACGTTTTGCATTCCCTCATCCCTCTCGTACCTGTAGAGCTTGGAGGATCTCTGAGAATTACAGAACCTCTGCATCCGAAAGTGCCTTCGTCGACCCGCTAA 1428 43.07 MHTRMAQSEEGKQRVQMGERLGGYAMNLLGILLPMWVFSSFFPIIDARPHLAGFSISSTVFASHTHPISLIVAKMEAQSPGVAEVKVVHHQDLNKRILIALIVSSTLLGVILLFLSCFWIYRRKTLNLDDGKCQKNLEASKGMPLNPIISRFNSLRLANFKGSVSTIDYKLLEAATDNFSKSNVLGEGGTGHVYKACFNDKLLAAVKKMDNGGPDAEREFENEVNWLCKIRHQNIIKLLGHCIHGETRFLVYEIMQNGSLESQLHGPSHGSALTWHIRMKIAVDVARGLEYLHEHRSPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVEKMGPTQSQSLVSWAIPQLSDRSKLPKIVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHPKVPSSTR 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2686711 2690822 + CcPI632755_09g003080.1 Cco09g0308 186765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0308 475 Gene3D Phosphorylase Kinase; domain 1 147 253 - -
Cco09g0308 475 SMART serkin_6 179 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0308 475 FunFam probable receptor-like protein kinase At1g80640 255 453 - -
Cco09g0308 475 FunFam Protein kinase superfamily protein 146 254 - -
Cco09g0308 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0308 475 PANTHER OS01G0750732 PROTEIN 85 452 IPR050885 -
Cco09g0308 475 Gene3D Transferase(Phosphotransferase) domain 1 255 453 - -
Cco09g0308 475 ProSiteProfiles Protein kinase domain profile. 179 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0308 475 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524(InterPro)
Cco09g0308 475 Pfam Protein tyrosine and serine/threonine kinase 182 390 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0308 475 CDD STKc_IRAK 185 451 - -
Cco09g0308 475 SUPERFAMILY Protein kinase-like (PK-like) 156 448 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0856 Cco-Chr7:19877554 Cco09g0308 Cco-Chr9:2686711 1.40E-30 dispersed
Cco09g0308 Cco-Chr9:2686711 Cco07g0149 Cco-Chr7:1521741 5.00E-70 dispersed
Cco11g0344 Cco-Chr11:3497078 Cco09g0308 Cco-Chr9:2686711 1.00E-62 wgd
Cco05g1886 Cco-Chr5:27895450 Cco09g0308 Cco-Chr9:2686711 1.30E-29 wgd
Cco06g1321 Cco-Chr6:23481554 Cco09g0308 Cco-Chr9:2686711 1.00E-59 wgd
Cco08g1529 Cco-Chr8:26947146 Cco09g0308 Cco-Chr9:2686711 1.30E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87079 PF00069 Pkinase 4.60E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0308 - - - 0.0