Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0309 ATGGCCCGACCGCAACAGCGCTATCGTGGCGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACGAGAATATGGTTAGGGACATTCGAGACGGCGGAGGATGCAGCCCGAGCTTACGACGAGGCAGCACGGCTGATGTGCGGTCCAAAGGCACGGACCAACTTCCAATATAATCCGAACGACCAACAGTTGTCGTCGTCTTCTTCCTCCTCTCCGTCCAAGCTTCTCCCCGCCGCGCTGATAGCGAAATTACATAAATGCCATTTGGCCTCACTCCAAATTGCGAAAAAACACGTCCACAGACAACACCCCGGATTCGAGCCCAACTACACCGCCTACGGCGGATCACCTCCACCGAGCATTGCCGGAACCACCGCAGGCCCGTGGACGCCGGAAGATACGTGGGTCTACTCCGACGAAGGTCAAATGGAGATGAATAACAATAATAATAACAACAACATTCATCATCAACAATGCCTTCAACCTCTTGAAGATGATCATATTGAACAAATGATACAAGAGCTGCTACATCTCGGACCATTCGAAATTATTACATAA 582 51.2 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQYNPNDQQLSSSSSSSPSKLLPAALIAKLHKCHLASLQIAKKHVHRQHPGFEPNYTAYGGSPPPSIAGTTAGPWTPEDTWVYSDEGQMEMNNNNNNNNIHHQQCLQPLEDDHIEQMIQELLHLGPFEIIT 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2705837 2706630 - CcPI632755_09g003090.1 Cco09g0309 186766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0309 193 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0309 193 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0309 193 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
Cco09g0309 193 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0309 193 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cco09g0309 193 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0309 193 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0309 193 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0309 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 166 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cco09g0309 193 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1531 Cco-Chr8:26971959 Cco09g0309 Cco-Chr9:2705837 8.80E-44 dispersed
Cco08g1532 Cco-Chr8:26979231 Cco09g0309 Cco-Chr9:2705837 1.00E-46 dispersed
Cco09g0309 Cco-Chr9:2705837 Cco11g0324 Cco-Chr11:3253956 7.50E-25 dispersed
Cco09g0305 Cco-Chr9:2663927 Cco09g0309 Cco-Chr9:2705837 2.30E-15 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59896 PF00847 AP2 8.20E-12 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0309 - - - 0.0