Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0317 ATGCCGGTTGACGGTTCCTCAACTGCCGCCTCCACCGTATGCGTCACCGGCGCCGGCGGCTTCATTGCCTCATGGATCGTCAAACTCCTCCTCCAGAAAGGCTATATCGTAAGAGGAACCGTCAGAAATCCAGAGGATCCGAAGAACCGCCATTTGAGAAAACTCGAAGGTGCGGCGGAGCGGCTCAGTTTGCATAAAGCGGATCTTCTCGATTTCGAAAGCCTCAGAGCGGCGATCGACGGCTGCGATGGCGTTTTCCACACGGCGTCGCCTGTGACTGACGATCCGGAGCAAATGGTGGAACCGGCGGTTAACGGAACGAAAAACGTCATAATCGCGGCGGCCGAAGCCAATGTCCGTCGCGTGGTGTTCACTTCCTCGATTGGTGCAGTCTACATGGACCCCAACCGTGGTCCAGACGACATCGTCGACGAGTCCTGTTGGAGCGATCTCGAGTTCTGTAAGAACACAAAGAATTGGTATTGCTATGGAAAAGCTGTGGCGGAGCAAGCCGCATGGGAGGTTGCGAAGGAGAAGGGGGTGGATTTGGTGGTGGTGAATCCAGTGCTGGTGCTAGGGCCATTGTTGCAATCCACCATTAATGCGAGCATAATTCATATACTGAAGTACTTGACTGGATCAGCTAAGACGTATGCCAATTCCGTTCAGGCATATGTACACGTGAAGGATGTGGCTCTAGCTCATATCCTTGTGTACGAGACTCCCTCCGCCGCCGGCCGGTACCTCTGTGCCGAGAGTGTGCTTCACAGAGGGGAGGTTGTTGAGATTCTGGCCAAATTGTTCCCGGAATATCCTGTTCCTACCAAGTGCTCAGATGAAGTGAACCCAAGGAAGAAGGCATACAACTTCTCCAACAAGAAGCTGAAGGACTTGGGATTGGAGTTCACTCCAGCGAAGCAGTGTTTATACGACACCGTTAAGAGCCTACAAGAGAAAGGTCATCTCCCAATGCCCACTTCTACTCAACCAGTTGACTCAATTCGAATTCAATCTTGA 1017 52.41 MPVDGSSTAASTVCVTGAGGFIASWIVKLLLQKGYIVRGTVRNPEDPKNRHLRKLEGAAERLSLHKADLLDFESLRAAIDGCDGVFHTASPVTDDPEQMVEPAVNGTKNVIIAAAEANVRRVVFTSSIGAVYMDPNRGPDDIVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKGVDLVVVNPVLVLGPLLQSTINASIIHILKYLTGSAKTYANSVQAYVHVKDVALAHILVYETPSAAGRYLCAESVLHRGEVVEILAKLFPEYPVPTKCSDEVNPRKKAYNFSNKKLKDLGLEFTPAKQCLYDTVKSLQEKGHLPMPTSTQPVDSIRIQS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2764161 2770172 + CcPI632755_09g003170.1 Cco09g0317 186774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0317 338 CDD FR_SDR_e 13 300 - -
Cco09g0317 338 Gene3D - 4 337 - -
Cco09g0317 338 Pfam NAD dependent epimerase/dehydratase family 13 245 IPR001509 -
Cco09g0317 338 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 315 IPR050425 GO:0016616(PANTHER)
Cco09g0317 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 317 IPR036291 -
Cco09g0317 338 FunFam Cinnamoyl-CoA reductase 1 4 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2458 Cco-Chr2:36967853 Cco09g0317 Cco-Chr9:2764161 2.90E-85 dispersed
Cco02g2465 Cco-Chr2:37024728 Cco09g0317 Cco-Chr9:2764161 3.40E-78 dispersed
Cco09g0317 Cco-Chr9:2764161 Cco10g1284 Cco-Chr10:25741373 8.50E-149 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0317 K09753 - csv:101213412 632.484