Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0324 ATGATCCATTTGTTTGCTGAGAATCTGTGGAGCCATCATTCTTCACTTGTTGTTACTTTTGATTTTGATTTTGATTTGTTTCGAAGGAAGTTAACGCCAGCCTCTTCGACTTGGAAAATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCCTCAGATGATGGTGAGAATGAAAGACTTCGGTATGGCCTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTATCTTGATTTGGACACTTCAACATCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTTCACCGACAGGTGCTCAAGCATGAATCATACATGGCTGGAGATTTGGGAACTTCTCTGCAGAAGGCCTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAGATTTCTGGTATGATTGAAGGATTTATATGGTCGCCCAAGGGTAGTGAAGCTAACAACCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCCTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGTCAGGCATATAATCTATCCAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCCGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCTCGGGCTATAGGAGACATGGAATTTAAGCAGAATAAAAGTATGCCTGCAGAAAAGCAGATTGTAACTGCCAATCCAGATGTGACAACTGTTGAGCTTTGTGAGGACGACGAGTTTCTTGTTATTGCCTGTGATGGGATCTGGGATTGCATGTCCAGCCAACAACTGGTTGACTACATTGGAGATCAACTAAAATCGGAAAGTAAACTCTCAGTCATTTGTGAGAGAGTATTTGACAGATGCTTGGCACCCACAGCTGGTGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAGTTTAAGAAACCCTTCGACAACCCAAATGCTGCTTCTACTTCTGCTGAGGAGCTGCCTTCATCGTCCAATCAAACGTTGTCTGGTCCGAATGAAGGCTCTTCGAAGACTAAATAG 1212 44.47 MIHLFAENLWSHHSSLVVTFDFDFDLFRRKLTPASSTWKMGIYLSSPKTEKASDDGENERLRYGLSSMQGWRATMEDAHAAYLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKHESYMAGDLGTSLQKAFLRMDEMMRGQRGWRELAILGDKMDKISGMIEGFIWSPKGSEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKSESKLSVICERVFDRCLAPTAGGEGCDNMTMILVQFKKPFDNPNAASTSAEELPSSSNQTLSGPNEGSSKTK 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2817230 2822469 - CcPI632755_09g003240.1 Cco09g0324 186781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0324 403 CDD PP2Cc 62 367 IPR001932 -
Cco09g0324 403 SMART PP2C_SIG_2 67 367 IPR001932 -
Cco09g0324 403 SMART PP2C_4 52 365 IPR001932 -
Cco09g0324 403 MobiDBLite consensus disorder prediction 374 403 - -
Cco09g0324 403 Pfam Protein phosphatase 2C 196 352 IPR001932 -
Cco09g0324 403 Pfam Protein phosphatase 2C 62 143 IPR001932 -
Cco09g0324 403 SUPERFAMILY PP2C-like 42 369 IPR036457 -
Cco09g0324 403 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169(InterPro)
Cco09g0324 403 Gene3D - 39 368 IPR036457 -
Cco09g0324 403 ProSiteProfiles PPM-type phosphatase domain profile. 62 367 IPR001932 -
Cco09g0324 403 PANTHER PROTEIN PHOSPHATASE 2C 57 368 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1850 Cco-Chr5:27433628 Cco09g0324 Cco-Chr9:2817230 2.00E-163 dispersed
Cco09g0324 Cco-Chr9:2817230 Cco09g0468 Cco-Chr9:4113846 7.00E-33 dispersed
Cco09g0324 Cco-Chr9:2817230 Cco03g0125 Cco-Chr3:1230429 3.00E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0324 K17499 - csv:101214132 710.679