Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0331 ATGATTTGTGACAAGAAAGCGATTATACCTCGCCAATCTTCCTATAACTCTCTGTATCTGAATCCACTTACTGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGCGGATTCCGGCAAGGTAAAGAAAACTTAATTCCTAATACGAAGGATAAACAGAGAGATGAAAATGCAGTGTTTTGCGATAAAGAAAATGCGATTCCCATTAATGGGTTTTGTGCTAATTCGAAGCAACAATTTGGGGATTTGAAGTCATTTTCGACTGGAAAGGCTTTGAAGCCTTCATCGCTTCATCTGTGTATGCAGATGAACGAACCCGATAAGGTTTTTGCCTCTAGATTGTGGGATGCCACTGATTCTGAACATTCAAGTTCTTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCCACTTTGCCAAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTGCATGGTGGAGCCTTCTATTCTCTATACACCAATGAAGGGAAGGGGCGGCAGGATCGGAAGTTGGCGGTGGCTCGCCATCGACGACGGAACGGGAGGTCAGAGTATAAAATATCTCAGAGTACAAGGGGGATATTGTGCAGTGCAGATGATAGTTTTGTTGGATCCATGACCACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCATCTGAAACCAATCCCGAGCAAGTCAAGATCGCTTCTGGCTGCTGTAACATTCATGCCTACAATAACTACTTGGACAGGCAGCCATAGGAGCATGAAGGCTTTCATCCCCAAGCATCAATCGATGCTGCTAAAAAACACCAATCAGGTGCAACACATAGCAGGGCTGCCAAAGGAGTGGGAGGAAGAAAAGACCAAAGTCCACCAGCTTGTTTCTAAGGTCCCCCAATACAACAAGATTTCTAAGCAATATGAATTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAAACCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGTAAACAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGTCTGGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTTGGTTGGTGA 1227 44.09 MICDKKAIIPRQSSYNSLYLNPLTDLRHNRSCSDGGGFRQGKENLIPNTKDKQRDENAVFCDKENAIPINGFCANSKQQFGDLKSFSTGKALKPSSLHLCMQMNEPDKVFASRLWDATDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKISQSTRGILCSADDSFVGSMTTNLVGSKYHIWDQGSHLKPIPSKSRSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMLLKNTNQVQHIAGLPKEWEEEKTKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSVGW 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2926805 2931058 + CcPI632755_09g003310.1 Cco09g0331 186788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0331 408 SUPERFAMILY Tubby C-terminal domain-like 139 404 IPR025659 -
Cco09g0331 408 Pfam Tub family 151 400 IPR000007 -
Cco09g0331 408 Gene3D Tubby Protein; Chain A 144 405 IPR025659 -
Cco09g0331 408 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cco09g0331 408 PRINTS Tubby superfamily signature 227 251 IPR000007 -
Cco09g0331 408 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Cco09g0331 408 PRINTS Tubby superfamily signature 383 405 IPR000007 -
Cco09g0331 408 PANTHER TUBBY-RELATED 126 404 - -
Cco09g0331 408 MobiDBLite consensus disorder prediction 31 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0837 Cco-Chr8:20209781 Cco09g0331 Cco-Chr9:2926805 3.60E-10 dispersed
Cco09g0331 Cco-Chr9:2926805 Cco05g2127 Cco-Chr5:30253926 4.10E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59898 PF01167 Tub 7.90E-46 CL0395 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0331 K19600 - csv:101216780 778.474