Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0332 ATGGCGAACATCTCACATCCTTCGCACAACAATTCCATTTCCACCACTGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGTTCTTTAATCTGTCTTTCTTTTTTCTCTTTGATGAATCTGCAATGTTTAGAGCCGATCCTGATTTTACTGTTCTTTGGTCTGCCTCTGTTTTGCGGTTGCGGTGGTTCATTGATGGAATCTGAACCGAAACGCGCAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATTTTAACGTACCGAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCAGCTTACGACAAAGCGGCCATAGAATACCGCGGCCTTAACGCCGTCACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGGATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGGCGAAACTACGTCAGAATTTGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTTGCAATGTTCGAGCTCCGGCCAACCTGCCACCGAGCCACTGCCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCCATTCCTCAAAATTTAAAGACATAATAGAAAGAACATCCGCCGCCGAGGCTCCACAGACGCCGCCGGAATCTGACCGTCCGCGCCGCTGTATTCCCGACGATATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTCCATCAGTTTTTCACTGCGAACTCGATGCTTAA 1227 48.74 MANISHPSHNNSISTTANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQGSLICLSFFSLMNLQCLEPILILLFFGLPLFCGCGGSLMESEPKRAVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQDIPNNNNRPPNPNAGETTSEFDPNSLLGFTFPLQCSSSGQPATEPLPEPGDGDSSSSSAALELLLHSSKFKDIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPPSVFHCELDA 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2933280 2939698 - CcPI632755_09g003320.1 Cco09g0332 186789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0332 408 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0332 408 PRINTS Ethylene responsive element binding protein signature 144 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0332 408 ProSiteProfiles AP2/ERF domain profile. 50 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0332 408 MobiDBLite consensus disorder prediction 266 290 - -
Cco09g0332 408 MobiDBLite consensus disorder prediction 269 290 - -
Cco09g0332 408 Gene3D AP2/ERF domain 197 258 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0332 408 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 274 - -
Cco09g0332 408 MobiDBLite consensus disorder prediction 1 51 - -
Cco09g0332 408 FunFam AP2-like ethylene-responsive transcription factor 197 258 - -
Cco09g0332 408 SMART rav1_2 198 262 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0332 408 SMART rav1_2 50 168 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0332 408 SUPERFAMILY DNA-binding domain 197 258 IPR016177 GO:0003677(InterPro)
Cco09g0332 408 CDD AP2 197 258 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0332 408 Pfam AP2 domain 197 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0332 408 Gene3D AP2/ERF domain 50 164 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0332 408 SUPERFAMILY DNA-binding domain 126 163 IPR016177 GO:0003677(InterPro)
Cco09g0332 408 ProSiteProfiles AP2/ERF domain profile. 198 256 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0332 408 MobiDBLite consensus disorder prediction 1 25 - -
Cco09g0332 408 MobiDBLite consensus disorder prediction 306 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1457 Cco-Chr6:25035595 Cco09g0332 Cco-Chr9:2933280 2.40E-106 dispersed
Cco08g1029 Cco-Chr8:22126054 Cco09g0332 Cco-Chr9:2933280 7.20E-69 dispersed
Cco08g1852 Cco-Chr8:29537290 Cco09g0332 Cco-Chr9:2933280 3.60E-63 dispersed
Cco09g0332 Cco-Chr9:2933280 Cco10g1476 Cco-Chr10:27846823 1.40E-68 dispersed
Cco09g0332 Cco-Chr9:2933280 Cco05g2472 Cco-Chr5:33153523 2.00E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59899 PF00847 AP2 8.50E-12 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0332 K09285 - csv:101206499 592.423