Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0332 | ATGGCGAACATCTCACATCCTTCGCACAACAATTCCATTTCCACCACTGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGTTCTTTAATCTGTCTTTCTTTTTTCTCTTTGATGAATCTGCAATGTTTAGAGCCGATCCTGATTTTACTGTTCTTTGGTCTGCCTCTGTTTTGCGGTTGCGGTGGTTCATTGATGGAATCTGAACCGAAACGCGCAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATTTTAACGTACCGAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCAGCTTACGACAAAGCGGCCATAGAATACCGCGGCCTTAACGCCGTCACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGGATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGGCGAAACTACGTCAGAATTTGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTTGCAATGTTCGAGCTCCGGCCAACCTGCCACCGAGCCACTGCCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCCATTCCTCAAAATTTAAAGACATAATAGAAAGAACATCCGCCGCCGAGGCTCCACAGACGCCGCCGGAATCTGACCGTCCGCGCCGCTGTATTCCCGACGATATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTCCATCAGTTTTTCACTGCGAACTCGATGCTTAA | 1227 | 48.74 | MANISHPSHNNSISTTANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQGSLICLSFFSLMNLQCLEPILILLFFGLPLFCGCGGSLMESEPKRAVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQDIPNNNNRPPNPNAGETTSEFDPNSLLGFTFPLQCSSSGQPATEPLPEPGDGDSSSSSAALELLLHSSKFKDIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPPSVFHCELDA | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2933280 | 2939698 | - | CcPI632755_09g003320.1 | Cco09g0332 | 186789 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0332 | 408 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0332 | 408 | PRINTS | Ethylene responsive element binding protein signature | 144 | 164 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0332 | 408 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 162 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0332 | 408 | MobiDBLite | consensus disorder prediction | 266 | 290 | - | - | |
Cco09g0332 | 408 | MobiDBLite | consensus disorder prediction | 269 | 290 | - | - | |
Cco09g0332 | 408 | Gene3D | AP2/ERF domain | 197 | 258 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0332 | 408 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 36 | 274 | - | - | |
Cco09g0332 | 408 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cco09g0332 | 408 | FunFam | AP2-like ethylene-responsive transcription factor | 197 | 258 | - | - | |
Cco09g0332 | 408 | SMART | rav1_2 | 198 | 262 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0332 | 408 | SMART | rav1_2 | 50 | 168 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0332 | 408 | SUPERFAMILY | DNA-binding domain | 197 | 258 | IPR016177 | GO:0003677(InterPro) | |
Cco09g0332 | 408 | CDD | AP2 | 197 | 258 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0332 | 408 | Pfam | AP2 domain | 197 | 248 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0332 | 408 | Gene3D | AP2/ERF domain | 50 | 164 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0332 | 408 | SUPERFAMILY | DNA-binding domain | 126 | 163 | IPR016177 | GO:0003677(InterPro) | |
Cco09g0332 | 408 | ProSiteProfiles | AP2/ERF domain profile. | 198 | 256 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0332 | 408 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cco09g0332 | 408 | MobiDBLite | consensus disorder prediction | 306 | 327 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1457 | Cco-Chr6:25035595 | Cco09g0332 | Cco-Chr9:2933280 | 2.40E-106 | dispersed | |
Cco08g1029 | Cco-Chr8:22126054 | Cco09g0332 | Cco-Chr9:2933280 | 7.20E-69 | dispersed | |
Cco08g1852 | Cco-Chr8:29537290 | Cco09g0332 | Cco-Chr9:2933280 | 3.60E-63 | dispersed | |
Cco09g0332 | Cco-Chr9:2933280 | Cco10g1476 | Cco-Chr10:27846823 | 1.40E-68 | dispersed | |
Cco09g0332 | Cco-Chr9:2933280 | Cco05g2472 | Cco-Chr5:33153523 | 2.00E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59899 | PF00847 | AP2 | 8.50E-12 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0332 | K09285 | - | csv:101206499 | 592.423 |