Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0341 | ATGAGAGATGATAGAATGGCCACCTCCTCGATTGGGGGTCTCATTCATCAACCTTTAGTGACCAATTTCTCAATTAATTCCAACTTCCTCAACTTCTTTGTTTTGACCCTGCTTCTGGTTTTGCAATTCATTCCTCCTTTCTCTGTTTCAGCATCTTGCAACCCATCTGATCGCGATTCTCTCTGGTATTTCGTCAATTCTTCATCTGCTTCACCGGCGGCTTTCAATTGGTCTTCTTCGATTGATTGTTGTTCCTGGGAAGGAGTCTTTTGTGAAGCAATCGCAAATAGCAACGACAAGCGAGTTACCCAGCTTTTGTTGCCCTCCAGAGATCTTCGTGGTGAACTCCCTTCATCTCTCACAAACCTTACTTTTCTCTCTAGCCTTGATCTCTCCCACAATCGTTTTAATGGCTCTCTCCCTTCTGATTTCTTTACGTCCCTAAGTAATCTCAAGGACCTGAATTTGAGCTACAACCTTCTCACCGGCCAGTTGCCTCCACCGCCGACTTCATCGTCCGGACTCTTGATTGAGAATCTGGATTTGTCCAGCAATCGATTCCATGGGGAAATACCTGCATCGTTTATCCAGCAAGTGGCAAGTTCGGGGAGTTTGACCAGTTTCAATGTCAGCAACAATAGTTTTTCAGGTCTCATTCCAACCTCCCTTTGTGTTAATACATCCATAAGCTCCCTAAGGTTATTAGACTTTTCCAATAATGGATTCGACGGTGGAATACCTCAGGGGCTAGGGAACTGCCCCAATTTGGAGGTTTTTCGAGCGAGTTTCAATGGTCTCACTGGTTCTATTCCCTTCGACCTTTATAATGCTATCGCTCTAAAGGAGCTTTCTTTACATGTTAATCATCTTTCGGGGAACATCGGCGAGGGAATCGTTAATCTAACCAACCTCAGAATCCTGGAATTGTACTCCAATTCTCTGATTGGCCCCATCCCAATGGATATTGGAAAGCTCTCCAAATTGGAACAGATATCGCTTCACATTAACAATCTCACAGGCACTCTGCCCAAATCACTGATGAATTGCACTAATCTTACTTTGTTGAATTTGCGGGTCAATAAGCTGCAAGGAGATCTCTCTAATGTTGATTTCTCTCGCCTCCTTGGCCTCACCACACTTGACCTCGGCAACAATATGTTCACAGGTAGTATACCATCGACTCTTTACTCCTGCAGATCTCTAAAGGCAGTTAGACTGGCTAGTAATCAGTTGTCTGGAGAGATCTCTAACGAAATTGCAGCGCTTCAATCACTGTCCTTCATCTCAGTTTCCAAGAATAATCTAACCAATTTAAGTGGAGCACTAAGGAGTTTGATGGGTTGCAGAAACCTTGGAACTCTTGTCCTGTCCGGTAGTTATATTGGTGAAGCATTGCCGGATGAAGATATGATTGTAGATGCTAACACATTCCAACATATCCAGGCTTTGGCTATTGGAGCTAGTCAGTTAACTGGTAAAGTACCCTCATGGATACAAAAGCTGAGGAATCTAGAGGTCTTGGACCTGTCTTTTAATCGCCTTATGGGTTCAATACCTGCATGGTTAGGTGATTTTCCGAGTCTGTTTTATATTGACTTGTCTAATAACAGAATTTCCGGAGAATTCCCCACCCAGCTTTGCAGACTGCAGGCTTTGATGTCGCAGCAGATTCTAGATCCTGCCAAGCAGAGTTTTCTTGCGTTGCCTGTCTTTGTTGCGCCCAGTAATGCTACCAATCAGCAATACAATCAGCTCTCCAGCCTTCCGCCAGCTATATACCTTGGCAACAACACCATAAGTGGCCCTATTCCTTTGGAAATCGGGCAATTGAAGTTTATACATATATTAGACCTGAGCAACAACAGCTTCTCCGGCAGCATACCAGACACGATTTCCAATCTCAGTAACTTGGAGAGATTAGACCTCTCTCATAACCACCTAACTGGTGAAATCCCCCGTTCACTCAAAGGCCTCCATTTCTTGTCTTGGTTTAGCGTGGCCTTTAACGACCTTCAAGGACCAATACCATCGGGGGGTCAGTTTGATACCTTTCCTAGCTCTAGCTATGAAGGAAACTCAGGGTTGTGTGGTCCTCCTATAGTGCAGCGCTCTTGCTCTAACCAGACTGGAGTAACCCATTCCAACGCTCAAAATAAAAGCTCCAGTAAGAAACTTGCCATAGGATTAGTCGTGGGTACCTGTTTAGGTATTGCTCTCATCATCACCCTGCTAGCGTTATGGATATTATCCAAGAGGAGGATTGATCCAAGAGGGGATACCGACATAATGGATTTGGACATAGTTTCAATTAGTTCTAATTACAATGCTGACAACAACACTAGCATAGTCATTTTGTTTCCAAATAATGCCAACAACATCAAGGAGCTTACCATTTCTGACATATTGAAGGCCACTGATGATTTCAATCAAGAAAACATAATTGGCTGCGGTGGTTTCGGATTGGTTTACAAGGCAACATTAGCAAATGGGACGAGACTTGCTGTGAAGAAACTCTCGGGAGATTTGGGACTGATGGAAAGGGAATTTAAAGCAGAAGTAGAGGCTCTTTCTGCAGCCAAACACAAGAACCTGGTTACGCTTCAAGGTTACTGTGTACATGAGGGCAGTCGGCTACTAATGTATTCATACATGGAAAACGGAAGTTTAGATTACTGGTTGCATGAGAAGGATGACGGTGCATCTCAACTTGATTGGCCTACTCGGTTGAAGATTATACGAGGAGCAAGTTCTGGATTGGCCTACATGCACCAAATATGCGAGCCACATATTGTACACCGTGATATTAAGTCCAGTAACATCCTGCTCGATGAGAAATTTGAAGCTCATGTAGCAGATTTTGGACTTTCTAGATTGATCAATCCTTACCAGACTCATGTTACAACCGAACTTGTTGGCACCTTGGGCTATATTCCTCCAGAGTATGGACAAGCATGGGTTGCCACTTTGAGAGGAGATATGTATAGCTTTGGTGTTGTCGTGCTCGAGTTGCTTACTGGCAAAAGACCTGTAGAGATATCAAAGCCAAAGGCATCACGAGAGTTGGTTGGCTGGGTGCAACAACTGAGAAATGAGGGAAAACAAGATGAAGTCTTTGACCCCATTTTGAGAGGGAAAGGCTTTGACGAAGAGATGATCCAGGTTCTCGATGTTGCCTGCATGTGTGTCAGTCAGAACCCCTTTAAAAGACCTACCATCAAGGAAGTTGTTGATTGGTTGAAAGATGTGGGGGCGACCAAAGTTCCCCAAAATAAGGATGTGTGA | 3282 | 44.03 | MRDDRMATSSIGGLIHQPLVTNFSINSNFLNFFVLTLLLVLQFIPPFSVSASCNPSDRDSLWYFVNSSSASPAAFNWSSSIDCCSWEGVFCEAIANSNDKRVTQLLLPSRDLRGELPSSLTNLTFLSSLDLSHNRFNGSLPSDFFTSLSNLKDLNLSYNLLTGQLPPPPTSSSGLLIENLDLSSNRFHGEIPASFIQQVASSGSLTSFNVSNNSFSGLIPTSLCVNTSISSLRLLDFSNNGFDGGIPQGLGNCPNLEVFRASFNGLTGSIPFDLYNAIALKELSLHVNHLSGNIGEGIVNLTNLRILELYSNSLIGPIPMDIGKLSKLEQISLHINNLTGTLPKSLMNCTNLTLLNLRVNKLQGDLSNVDFSRLLGLTTLDLGNNMFTGSIPSTLYSCRSLKAVRLASNQLSGEISNEIAALQSLSFISVSKNNLTNLSGALRSLMGCRNLGTLVLSGSYIGEALPDEDMIVDANTFQHIQALAIGASQLTGKVPSWIQKLRNLEVLDLSFNRLMGSIPAWLGDFPSLFYIDLSNNRISGEFPTQLCRLQALMSQQILDPAKQSFLALPVFVAPSNATNQQYNQLSSLPPAIYLGNNTISGPIPLEIGQLKFIHILDLSNNSFSGSIPDTISNLSNLERLDLSHNHLTGEIPRSLKGLHFLSWFSVAFNDLQGPIPSGGQFDTFPSSSYEGNSGLCGPPIVQRSCSNQTGVTHSNAQNKSSSKKLAIGLVVGTCLGIALIITLLALWILSKRRIDPRGDTDIMDLDIVSISSNYNADNNTSIVILFPNNANNIKELTISDILKATDDFNQENIIGCGGFGLVYKATLANGTRLAVKKLSGDLGLMEREFKAEVEALSAAKHKNLVTLQGYCVHEGSRLLMYSYMENGSLDYWLHEKDDGASQLDWPTRLKIIRGASSGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLINPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVVLELLTGKRPVEISKPKASRELVGWVQQLRNEGKQDEVFDPILRGKGFDEEMIQVLDVACMCVSQNPFKRPTIKEVVDWLKDVGATKVPQNKDV | 1093 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3012592 | 3015873 | + | CcPI632755_09g003410.1 | Cco09g0341 | 186798 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0341 | 1093 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 271 | 366 | - | - | |
Cco09g0341 | 1093 | SMART | LRR_sd22_2 | 634 | 660 | - | - | |
Cco09g0341 | 1093 | SMART | LRR_sd22_2 | 301 | 333 | - | - | |
Cco09g0341 | 1093 | SMART | LRR_sd22_2 | 148 | 182 | - | - | |
Cco09g0341 | 1093 | SMART | LRR_sd22_2 | 501 | 520 | - | - | |
Cco09g0341 | 1093 | SUPERFAMILY | L domain-like | 478 | 700 | - | - | |
Cco09g0341 | 1093 | Gene3D | Ribonuclease Inhibitor | 438 | 713 | IPR032675 | - | |
Cco09g0341 | 1093 | ProSiteProfiles | Leucine-rich repeat profile. | 636 | 659 | IPR001611 | GO:0005515(InterPro) | |
Cco09g0341 | 1093 | Gene3D | Ribonuclease Inhibitor | 56 | 197 | IPR032675 | - | |
Cco09g0341 | 1093 | Gene3D | Ribonuclease Inhibitor | 198 | 296 | IPR032675 | - | |
Cco09g0341 | 1093 | Gene3D | Ribonuclease Inhibitor | 297 | 437 | IPR032675 | - | |
Cco09g0341 | 1093 | SUPERFAMILY | L domain-like | 229 | 554 | - | - | |
Cco09g0341 | 1093 | SMART | serkin_6 | 808 | 1079 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0341 | 1093 | SUPERFAMILY | L domain-like | 52 | 293 | - | - | |
Cco09g0341 | 1093 | FunFam | Leucine-rich repeat receptor-like protein kinase | 884 | 1090 | - | - | |
Cco09g0341 | 1093 | FunFam | Tyrosine-sulfated glycopeptide receptor 1 | 371 | 710 | - | - | |
Cco09g0341 | 1093 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 930 | 942 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g0341 | 1093 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 771 | 883 | - | - | |
Cco09g0341 | 1093 | Gene3D | Phosphorylase Kinase; domain 1 | 769 | 883 | - | - | |
Cco09g0341 | 1093 | ProSitePatterns | Protein kinases ATP-binding region signature. | 814 | 837 | IPR017441 | GO:0005524(InterPro) | |
Cco09g0341 | 1093 | SMART | LRR_typ_2 | 374 | 398 | IPR003591 | - | |
Cco09g0341 | 1093 | SMART | LRR_typ_2 | 123 | 147 | IPR003591 | - | |
Cco09g0341 | 1093 | SMART | LRR_typ_2 | 501 | 525 | IPR003591 | - | |
Cco09g0341 | 1093 | SMART | LRR_typ_2 | 148 | 174 | IPR003591 | - | |
Cco09g0341 | 1093 | SMART | LRR_typ_2 | 634 | 657 | IPR003591 | - | |
Cco09g0341 | 1093 | SMART | LRR_typ_2 | 229 | 253 | IPR003591 | - | |
Cco09g0341 | 1093 | SMART | LRR_typ_2 | 325 | 349 | IPR003591 | - | |
Cco09g0341 | 1093 | SMART | LRR_typ_2 | 422 | 444 | IPR003591 | - | |
Cco09g0341 | 1093 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 300 | 1080 | IPR051420 | - | |
Cco09g0341 | 1093 | Pfam | Leucine rich repeat | 614 | 671 | IPR001611 | GO:0005515(InterPro) | |
Cco09g0341 | 1093 | Pfam | Leucine rich repeat | 479 | 538 | IPR001611 | GO:0005515(InterPro) | |
Cco09g0341 | 1093 | Pfam | Leucine rich repeat | 126 | 187 | IPR001611 | GO:0005515(InterPro) | |
Cco09g0341 | 1093 | PRINTS | Leucine-rich repeat signature | 634 | 647 | - | - | |
Cco09g0341 | 1093 | PRINTS | Leucine-rich repeat signature | 126 | 139 | - | - | |
Cco09g0341 | 1093 | Pfam | Leucine rich repeat N-terminal domain | 55 | 91 | IPR013210 | - | |
Cco09g0341 | 1093 | Pfam | Leucine Rich Repeat | 204 | 224 | IPR001611 | GO:0005515(InterPro) | |
Cco09g0341 | 1093 | Pfam | Leucine Rich Repeat | 377 | 398 | IPR001611 | GO:0005515(InterPro) | |
Cco09g0341 | 1093 | Pfam | Leucine Rich Repeat | 231 | 253 | IPR001611 | GO:0005515(InterPro) | |
Cco09g0341 | 1093 | Pfam | Protein kinase domain | 809 | 1076 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0341 | 1093 | ProSiteProfiles | Protein kinase domain profile. | 808 | 1079 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0341 | 1093 | Gene3D | Transferase(Phosphotransferase) domain 1 | 884 | 1090 | - | - | |
Cco09g0341 | 1093 | SUPERFAMILY | Protein kinase-like (PK-like) | 791 | 1079 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1347 | Cco-Chr4:28812791 | Cco09g0341 | Cco-Chr9:3012592 | 1.60E-77 | dispersed | |
Cco09g0341 | Cco-Chr9:3012592 | Cco11g0107 | Cco-Chr11:1152940 | 2.40E-136 | dispersed | |
Cco09g2058 | Cco-Chr9:34984188 | Cco09g0341 | Cco-Chr9:3012592 | 4.00E-64 | dispersed | |
Cco09g0341 | Cco-Chr9:3012592 | Cco05g0956 | Cco-Chr5:8373359 | 3.50E-79 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87083 | PF00069 | Pkinase | 4.70E-42 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0341 | K27589 | - | csv:101217884 | 1926.75 |