Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0341 ATGAGAGATGATAGAATGGCCACCTCCTCGATTGGGGGTCTCATTCATCAACCTTTAGTGACCAATTTCTCAATTAATTCCAACTTCCTCAACTTCTTTGTTTTGACCCTGCTTCTGGTTTTGCAATTCATTCCTCCTTTCTCTGTTTCAGCATCTTGCAACCCATCTGATCGCGATTCTCTCTGGTATTTCGTCAATTCTTCATCTGCTTCACCGGCGGCTTTCAATTGGTCTTCTTCGATTGATTGTTGTTCCTGGGAAGGAGTCTTTTGTGAAGCAATCGCAAATAGCAACGACAAGCGAGTTACCCAGCTTTTGTTGCCCTCCAGAGATCTTCGTGGTGAACTCCCTTCATCTCTCACAAACCTTACTTTTCTCTCTAGCCTTGATCTCTCCCACAATCGTTTTAATGGCTCTCTCCCTTCTGATTTCTTTACGTCCCTAAGTAATCTCAAGGACCTGAATTTGAGCTACAACCTTCTCACCGGCCAGTTGCCTCCACCGCCGACTTCATCGTCCGGACTCTTGATTGAGAATCTGGATTTGTCCAGCAATCGATTCCATGGGGAAATACCTGCATCGTTTATCCAGCAAGTGGCAAGTTCGGGGAGTTTGACCAGTTTCAATGTCAGCAACAATAGTTTTTCAGGTCTCATTCCAACCTCCCTTTGTGTTAATACATCCATAAGCTCCCTAAGGTTATTAGACTTTTCCAATAATGGATTCGACGGTGGAATACCTCAGGGGCTAGGGAACTGCCCCAATTTGGAGGTTTTTCGAGCGAGTTTCAATGGTCTCACTGGTTCTATTCCCTTCGACCTTTATAATGCTATCGCTCTAAAGGAGCTTTCTTTACATGTTAATCATCTTTCGGGGAACATCGGCGAGGGAATCGTTAATCTAACCAACCTCAGAATCCTGGAATTGTACTCCAATTCTCTGATTGGCCCCATCCCAATGGATATTGGAAAGCTCTCCAAATTGGAACAGATATCGCTTCACATTAACAATCTCACAGGCACTCTGCCCAAATCACTGATGAATTGCACTAATCTTACTTTGTTGAATTTGCGGGTCAATAAGCTGCAAGGAGATCTCTCTAATGTTGATTTCTCTCGCCTCCTTGGCCTCACCACACTTGACCTCGGCAACAATATGTTCACAGGTAGTATACCATCGACTCTTTACTCCTGCAGATCTCTAAAGGCAGTTAGACTGGCTAGTAATCAGTTGTCTGGAGAGATCTCTAACGAAATTGCAGCGCTTCAATCACTGTCCTTCATCTCAGTTTCCAAGAATAATCTAACCAATTTAAGTGGAGCACTAAGGAGTTTGATGGGTTGCAGAAACCTTGGAACTCTTGTCCTGTCCGGTAGTTATATTGGTGAAGCATTGCCGGATGAAGATATGATTGTAGATGCTAACACATTCCAACATATCCAGGCTTTGGCTATTGGAGCTAGTCAGTTAACTGGTAAAGTACCCTCATGGATACAAAAGCTGAGGAATCTAGAGGTCTTGGACCTGTCTTTTAATCGCCTTATGGGTTCAATACCTGCATGGTTAGGTGATTTTCCGAGTCTGTTTTATATTGACTTGTCTAATAACAGAATTTCCGGAGAATTCCCCACCCAGCTTTGCAGACTGCAGGCTTTGATGTCGCAGCAGATTCTAGATCCTGCCAAGCAGAGTTTTCTTGCGTTGCCTGTCTTTGTTGCGCCCAGTAATGCTACCAATCAGCAATACAATCAGCTCTCCAGCCTTCCGCCAGCTATATACCTTGGCAACAACACCATAAGTGGCCCTATTCCTTTGGAAATCGGGCAATTGAAGTTTATACATATATTAGACCTGAGCAACAACAGCTTCTCCGGCAGCATACCAGACACGATTTCCAATCTCAGTAACTTGGAGAGATTAGACCTCTCTCATAACCACCTAACTGGTGAAATCCCCCGTTCACTCAAAGGCCTCCATTTCTTGTCTTGGTTTAGCGTGGCCTTTAACGACCTTCAAGGACCAATACCATCGGGGGGTCAGTTTGATACCTTTCCTAGCTCTAGCTATGAAGGAAACTCAGGGTTGTGTGGTCCTCCTATAGTGCAGCGCTCTTGCTCTAACCAGACTGGAGTAACCCATTCCAACGCTCAAAATAAAAGCTCCAGTAAGAAACTTGCCATAGGATTAGTCGTGGGTACCTGTTTAGGTATTGCTCTCATCATCACCCTGCTAGCGTTATGGATATTATCCAAGAGGAGGATTGATCCAAGAGGGGATACCGACATAATGGATTTGGACATAGTTTCAATTAGTTCTAATTACAATGCTGACAACAACACTAGCATAGTCATTTTGTTTCCAAATAATGCCAACAACATCAAGGAGCTTACCATTTCTGACATATTGAAGGCCACTGATGATTTCAATCAAGAAAACATAATTGGCTGCGGTGGTTTCGGATTGGTTTACAAGGCAACATTAGCAAATGGGACGAGACTTGCTGTGAAGAAACTCTCGGGAGATTTGGGACTGATGGAAAGGGAATTTAAAGCAGAAGTAGAGGCTCTTTCTGCAGCCAAACACAAGAACCTGGTTACGCTTCAAGGTTACTGTGTACATGAGGGCAGTCGGCTACTAATGTATTCATACATGGAAAACGGAAGTTTAGATTACTGGTTGCATGAGAAGGATGACGGTGCATCTCAACTTGATTGGCCTACTCGGTTGAAGATTATACGAGGAGCAAGTTCTGGATTGGCCTACATGCACCAAATATGCGAGCCACATATTGTACACCGTGATATTAAGTCCAGTAACATCCTGCTCGATGAGAAATTTGAAGCTCATGTAGCAGATTTTGGACTTTCTAGATTGATCAATCCTTACCAGACTCATGTTACAACCGAACTTGTTGGCACCTTGGGCTATATTCCTCCAGAGTATGGACAAGCATGGGTTGCCACTTTGAGAGGAGATATGTATAGCTTTGGTGTTGTCGTGCTCGAGTTGCTTACTGGCAAAAGACCTGTAGAGATATCAAAGCCAAAGGCATCACGAGAGTTGGTTGGCTGGGTGCAACAACTGAGAAATGAGGGAAAACAAGATGAAGTCTTTGACCCCATTTTGAGAGGGAAAGGCTTTGACGAAGAGATGATCCAGGTTCTCGATGTTGCCTGCATGTGTGTCAGTCAGAACCCCTTTAAAAGACCTACCATCAAGGAAGTTGTTGATTGGTTGAAAGATGTGGGGGCGACCAAAGTTCCCCAAAATAAGGATGTGTGA 3282 44.03 MRDDRMATSSIGGLIHQPLVTNFSINSNFLNFFVLTLLLVLQFIPPFSVSASCNPSDRDSLWYFVNSSSASPAAFNWSSSIDCCSWEGVFCEAIANSNDKRVTQLLLPSRDLRGELPSSLTNLTFLSSLDLSHNRFNGSLPSDFFTSLSNLKDLNLSYNLLTGQLPPPPTSSSGLLIENLDLSSNRFHGEIPASFIQQVASSGSLTSFNVSNNSFSGLIPTSLCVNTSISSLRLLDFSNNGFDGGIPQGLGNCPNLEVFRASFNGLTGSIPFDLYNAIALKELSLHVNHLSGNIGEGIVNLTNLRILELYSNSLIGPIPMDIGKLSKLEQISLHINNLTGTLPKSLMNCTNLTLLNLRVNKLQGDLSNVDFSRLLGLTTLDLGNNMFTGSIPSTLYSCRSLKAVRLASNQLSGEISNEIAALQSLSFISVSKNNLTNLSGALRSLMGCRNLGTLVLSGSYIGEALPDEDMIVDANTFQHIQALAIGASQLTGKVPSWIQKLRNLEVLDLSFNRLMGSIPAWLGDFPSLFYIDLSNNRISGEFPTQLCRLQALMSQQILDPAKQSFLALPVFVAPSNATNQQYNQLSSLPPAIYLGNNTISGPIPLEIGQLKFIHILDLSNNSFSGSIPDTISNLSNLERLDLSHNHLTGEIPRSLKGLHFLSWFSVAFNDLQGPIPSGGQFDTFPSSSYEGNSGLCGPPIVQRSCSNQTGVTHSNAQNKSSSKKLAIGLVVGTCLGIALIITLLALWILSKRRIDPRGDTDIMDLDIVSISSNYNADNNTSIVILFPNNANNIKELTISDILKATDDFNQENIIGCGGFGLVYKATLANGTRLAVKKLSGDLGLMEREFKAEVEALSAAKHKNLVTLQGYCVHEGSRLLMYSYMENGSLDYWLHEKDDGASQLDWPTRLKIIRGASSGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLINPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVVLELLTGKRPVEISKPKASRELVGWVQQLRNEGKQDEVFDPILRGKGFDEEMIQVLDVACMCVSQNPFKRPTIKEVVDWLKDVGATKVPQNKDV 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3012592 3015873 + CcPI632755_09g003410.1 Cco09g0341 186798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0341 1093 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 366 - -
Cco09g0341 1093 SMART LRR_sd22_2 634 660 - -
Cco09g0341 1093 SMART LRR_sd22_2 301 333 - -
Cco09g0341 1093 SMART LRR_sd22_2 148 182 - -
Cco09g0341 1093 SMART LRR_sd22_2 501 520 - -
Cco09g0341 1093 SUPERFAMILY L domain-like 478 700 - -
Cco09g0341 1093 Gene3D Ribonuclease Inhibitor 438 713 IPR032675 -
Cco09g0341 1093 ProSiteProfiles Leucine-rich repeat profile. 636 659 IPR001611 GO:0005515(InterPro)
Cco09g0341 1093 Gene3D Ribonuclease Inhibitor 56 197 IPR032675 -
Cco09g0341 1093 Gene3D Ribonuclease Inhibitor 198 296 IPR032675 -
Cco09g0341 1093 Gene3D Ribonuclease Inhibitor 297 437 IPR032675 -
Cco09g0341 1093 SUPERFAMILY L domain-like 229 554 - -
Cco09g0341 1093 SMART serkin_6 808 1079 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0341 1093 SUPERFAMILY L domain-like 52 293 - -
Cco09g0341 1093 FunFam Leucine-rich repeat receptor-like protein kinase 884 1090 - -
Cco09g0341 1093 FunFam Tyrosine-sulfated glycopeptide receptor 1 371 710 - -
Cco09g0341 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0341 1093 FunFam Leucine-rich repeat receptor protein kinase MSP1 771 883 - -
Cco09g0341 1093 Gene3D Phosphorylase Kinase; domain 1 769 883 - -
Cco09g0341 1093 ProSitePatterns Protein kinases ATP-binding region signature. 814 837 IPR017441 GO:0005524(InterPro)
Cco09g0341 1093 SMART LRR_typ_2 374 398 IPR003591 -
Cco09g0341 1093 SMART LRR_typ_2 123 147 IPR003591 -
Cco09g0341 1093 SMART LRR_typ_2 501 525 IPR003591 -
Cco09g0341 1093 SMART LRR_typ_2 148 174 IPR003591 -
Cco09g0341 1093 SMART LRR_typ_2 634 657 IPR003591 -
Cco09g0341 1093 SMART LRR_typ_2 229 253 IPR003591 -
Cco09g0341 1093 SMART LRR_typ_2 325 349 IPR003591 -
Cco09g0341 1093 SMART LRR_typ_2 422 444 IPR003591 -
Cco09g0341 1093 PANTHER LEUCINE RICH REPEAT KINASE 2 300 1080 IPR051420 -
Cco09g0341 1093 Pfam Leucine rich repeat 614 671 IPR001611 GO:0005515(InterPro)
Cco09g0341 1093 Pfam Leucine rich repeat 479 538 IPR001611 GO:0005515(InterPro)
Cco09g0341 1093 Pfam Leucine rich repeat 126 187 IPR001611 GO:0005515(InterPro)
Cco09g0341 1093 PRINTS Leucine-rich repeat signature 634 647 - -
Cco09g0341 1093 PRINTS Leucine-rich repeat signature 126 139 - -
Cco09g0341 1093 Pfam Leucine rich repeat N-terminal domain 55 91 IPR013210 -
Cco09g0341 1093 Pfam Leucine Rich Repeat 204 224 IPR001611 GO:0005515(InterPro)
Cco09g0341 1093 Pfam Leucine Rich Repeat 377 398 IPR001611 GO:0005515(InterPro)
Cco09g0341 1093 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515(InterPro)
Cco09g0341 1093 Pfam Protein kinase domain 809 1076 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0341 1093 ProSiteProfiles Protein kinase domain profile. 808 1079 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0341 1093 Gene3D Transferase(Phosphotransferase) domain 1 884 1090 - -
Cco09g0341 1093 SUPERFAMILY Protein kinase-like (PK-like) 791 1079 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1347 Cco-Chr4:28812791 Cco09g0341 Cco-Chr9:3012592 1.60E-77 dispersed
Cco09g0341 Cco-Chr9:3012592 Cco11g0107 Cco-Chr11:1152940 2.40E-136 dispersed
Cco09g2058 Cco-Chr9:34984188 Cco09g0341 Cco-Chr9:3012592 4.00E-64 dispersed
Cco09g0341 Cco-Chr9:3012592 Cco05g0956 Cco-Chr5:8373359 3.50E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87083 PF00069 Pkinase 4.70E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0341 K27589 - csv:101217884 1926.75