Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0342 ATGGCTGTTGAATCAAACCAAACTAACGAATTCATTTTCCGTTCAAAGCTTCCCCATATTCACATTCCCAATCATCTCCCACTCCACGAATACGTTTTCCAAAATCTCCCCAAATTTGCCTCACGCCCCTGTTTGATCAACGGCGCCACCGGCGATGTTTACTCCTACAGCGACGTTCACCTAACGGCCCGTCGAGTAGCCGCCGGCCTACACAACCTCGGAATTAATAAGGGCGATGTCGTCATGAATTTGCTTCCCAACTCCCCGGAGTTCGTCTTCACCTTCCTCGCCGCGTCGTACCGGGGCGCCATCACGACGGCGGCGAACCCTTTTTACACGGCAGTGGAAATTGCAAAACAGGCCAAAGCCGCCAATGCGAAGTTGATCGTGACCATGGCTTGCTTTTACGATCGGGTTAAGGATTTGGCTGAAAATGGTGTCAAAATTGTATGCGTTGATTTTGCTGTCGAGGGTTGTTTGCATTTCTCTGTTTTGAGTGGGGCTGATGAATCTAATGCGCCGCCGGTGGATTTTTCCCCTGACGACGTGGTGGCGCTGCCATACTCCTCCGGCACCACCGGTTTGCCGAAGGGAGTCATGTTAACTCATAAAGGGTTAATCACAAGCGTGGCTCAACAAATGGACGGCCAAAATCCGAACCTCTATTATCACGGCGATGATGTTATCCTCTGTGTGCTGCCGTTTTTCCACATTTATTCACTCAATTCCATTTTGCTGTGTGGGCTACGCGTCGGTGCTGCGATTGTGATTATGCAGAAATTTGACATCGTTTCTCTCTTGCAATTGATTGAGAAATACAGAATCTCGATCATGCCCATCGTCCCGCCGATCTTTTTGGCCATTGCTAAGTCGCCGGAATTTGAGAAATACGACGTGTCGTCAGTGAGGGTTCTCAAATCCGGTGGAGCTCCGCTGGGGAAGGAGCTGGAAGACGCCGTGCGGGAGAAATTTCCGGCGGCGGTTCTCGGACAGGGGTATGGAATGACCGAGGCCGGTCCGGTTCTGAGCATGAGTTTAGCTTTTGCGAAAGAGCCGTTTGAAGTGAAAGCCGGAGCTTGTGGAACTGTGGTCCGAAATGCAGAGATGAAGATTGTCGACCCAGAAACCGGCGCGTCCTTGCCGGCAAATTCGGCCGGAGAGATTTGTATTAGAGGTGATCAGATCATGAAGGGGTATTTGAATGATTTGGAGTCAACAAAGAGGACTATTGATAAAGAAGGATGGCTTCACACCGGTGACATCGGCTTCGTGGACGACGACGATGAGATCTTCATCGTAGACCGGCTTAAGGAACTTATTAAATTTAAGGCCTTTCAAGTGGCGCCCGCCGAGCTGGAGGCCCTTCTTATCACCCACCCAAAACTATCTGACGCTGCTGTTATTGGTATGCCGGATGTGGAGGCAGGAGAAGTGCCAGTGGCGTTTGTGGTGAAGGCGAACGGTGGCGCTATAACAGAGGAAGATGTAAAGCAATTCATAACAAAACAAGTGGTGTTCTACAAGAGGCTTAAACGTGTGTTTTTCGTCAACGCAATTCCAAAGGCTCCATCTGGAAAAATCCTTAGAAAAGAACTCAGAGCAAAACTGGCTTCTGCTGCTTACAATTAA 1629 49.66 MAVESNQTNEFIFRSKLPHIHIPNHLPLHEYVFQNLPKFASRPCLINGATGDVYSYSDVHLTARRVAAGLHNLGINKGDVVMNLLPNSPEFVFTFLAASYRGAITTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHFSVLSGADESNAPPVDFSPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHGDDVILCVLPFFHIYSLNSILLCGLRVGAAIVIMQKFDIVSLLQLIEKYRISIMPIVPPIFLAIAKSPEFEKYDVSSVRVLKSGGAPLGKELEDAVREKFPAAVLGQGYGMTEAGPVLSMSLAFAKEPFEVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDIGFVDDDDEIFIVDRLKELIKFKAFQVAPAELEALLITHPKLSDAAVIGMPDVEAGEVPVAFVVKANGGAITEEDVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKLASAAYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3026193 3027928 + CcPI632755_09g003420.1 Cco09g0342 186799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0342 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Cco09g0342 542 CDD 4CL 22 532 - -
Cco09g0342 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Cco09g0342 542 Gene3D - 3 436 IPR042099 -
Cco09g0342 542 SUPERFAMILY Acetyl-CoA synthetase-like 15 538 - -
Cco09g0342 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Cco09g0342 542 Pfam AMP-binding enzyme 37 400 IPR000873 -
Cco09g0342 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Cco09g0342 542 Gene3D - 437 539 IPR045851 -
Cco09g0342 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1522 Cco-Chr6:25715960 Cco09g0342 Cco-Chr9:3026193 2.10E-205 dispersed
Cco09g0342 Cco-Chr9:3026193 Cco09g0344 Cco-Chr9:3048826 1.10E-291 dispersed
Cco09g0342 Cco-Chr9:3026193 Cco09g0343 Cco-Chr9:3038767 1.6e-311 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0342 K01904 - csv:101218121 987.638