Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g0345 | ATGAAACGACATCGTACCCCACCACGGCGGGTGGTGGGTGGGTGGGTGGCGGTGGACTGTGGACTGTGGAGGGGGAAGCTCCATCTAAAGCCAAAGACTGTTTCTTTGTGGGTTCCCACACTTGGGACTCCGGTGAATATCATTGTCGGATCACATGTTTGGGTTGAGGATCCTGAGGATGCTTGGATTGAAGGGCAAGTTATAGAAATTAATGGCAAAAATGCTACTATACTCACTACCAATGAAAAAACTATTGTTGCAGAAATTTCGAGTATATATCCGAAAGACACGGAGGCGCCGCCGGCGGGGGTTGACGACATGACGAAATTGGCGTATCTTCATGAACCGGGAGTTCTGCATAACCTAGCTTGTCGATTTTCTCTCAATGAAATATACACATACACCGGGAATATTCTAATTGCGGTGAATCCTTTCCGGCGACTGCCCCATTTGTATGATATTCACATGATGGAACAATATAAAGGAGCTCCTTTCGGCGAACTTAGTCCACATCTTTTCGCTGTTGCAGATGCTTGCTACAGATCGATGATTAACGAGCAAGGAAGTCAGTCCATATTAGTGAGTGGAGAGAGTGGTGCTGGTAAAACTGAGACAACAAAGATGCTCATGAGATATCTTGCATTCATGGGAGGCAGGTCAGATACTGAAGGAAGAACAGTTGAACAACAGGTTTTGGAGTCCAACCCTGTACTGGAAGCATTTGGAAATGCCAAAACCGTCAAAAACAACAATTCAAGTCGTTTTGGTAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGGGCTGCCATTCGTACATACCTTCTCGAACGGTCACGTGTTTGCCAAGTCTCAGACCCTGAGAGAAACTACCATTGTTTTTACATGCTCTGTGCAGCACCACCAGAAGATGTCAAGAAATTCAAGTTAGGAGACCCGAGGACATTTCATTATCTTAATCAAACGAATTGTTATGAAGTGGCAAATGTCGATGATGCAAGAGAGTACTTAGAGACGAGAAATGCCATGGATGTTGTCGGAATCAGCCAGGAGGAACAGGATGCTATATTTCGTGTTGTAGCTTCAATACTGCATCTTGGAAACATCAACTTCATGAAAGGGAAGGAAGTTGACTCTTCCAAAGTGAAAGACGAGAAGTCTAATTATCATCTTCAAACAGCAGCAGAGCTACTCATGTGTGATGTGAAGGCACTGGAACATTCACTCTGCCAGCGTGTCATAGTGACTCCAGATGGCAACATTACAAAGCCCTTGGACCCAGATTCAGCAGCCTTGAGTCGTGATGCATTGGCAAAAACTGTGTATTCTAGGCTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGCCAAGATCCTAATGCAGCCAGCTTAATTGGAGTTCTTGATATTTATGGTTTCGAAAGCTTCAAGATCAACAGTTTTGAGCAGCTCTGTATCAACCTGACCAATGAGAAGTTGCAGCAACATTTTAATCAGCATGTCTTCAAGATGGAGCAAGAGGAGTATACGAAGGAAGAAATAAACTGGAGCTATGTTGAGTTTGTAGATAATCAGGATGTCCTTGATCTTATTGAGAAGAAACCTGGAGGTATAATCGCCCTGCTTGATGAAGCCTGTATGTTTCCAAAGTCAACACACGAAACATTTGCTCAAAAGATGTATCAGACGTACAAAGGACATAAGCGGTTCAGCAAGCCAAAACTTGCTCGAACAGACTTCACAATAAACCATTATGCTGGAGATGTTACATACCAAGCAGATCAATTTCTTGATAAAAACAAGGACTATGTAGTAGCAGAACATCAGGCTCTTCTAAATGCCTCACGATGCTCTTTTGTTGCTAATCTTTTCCCTCCACTTCCTGAGGAGAGCTCAAAGCAATCCAAGTTTTCCTCTATTGGTACTCGGTTCAAGCAACAACTACAAGCTCTCATGGAAACATTGAATACTACAGAACCACATTATATTAGATGTGTAAAGCCCAACACAGTTTTGAAACCTGGCATCTTTGAGAACTTCAACGTGTTGAACCAATTGAGGTGTGGGGGAGTGCTCGAGGCAATTAGGATAAGTTGTGCAGGATATCCAACAAAAAGAACATTTGATGAGTTCCTTGATCGTTTTGGAATGCTTGCTCCAGATATTTCGGATGGTTCTGATGAAAAATCAGCATGCATTGCAATATGTGACAGAATGGGCTTAAAAGGTTATCAGATTGGAAAAACAAAAGTGTTCCTCAGAGCTGGACAAATGGCTGAGTTGGATGCACGACGAACTGAAATTTTGGCTAATGCTGTCAGACGCATCCAGCGGCAAATACGAACCCATCTAACTAGGAAAGAGTTTATCGCCCTGAGGAGAGCTGCAATTCATATCCAGAAACTTTGGAGAGGGCAACTTGCTCGTAAGCTGTATGAGCAAATGAGGAGAGAAGCAGCTTCAATCCGTATACAGAAGCATGCACGTGCTCACGCAGATAGAAAATCTTACAAAAAATTACTTGCATCAGCTATAGTTATTCAAACTGGTATGCGTGCAATGGCAGCTAGAAATGAGTACAGACACAGAAGAAGAACTAAGGCAGCTATCATTGTTCAGACTGAATGGCGGAGGGCATCAGCTATTTCAGCTTACAAACAGCAGCAGAAGGCAACTCTTGCCCTTCAATGCCTCTGGCGATCTAAAGTTGCAAGGAAGGAGCTTAGAAAATTAAAGATGGCTGCAAGAGAAACAGGAGCACTCAAGGAGGCCAAGGACAAATTGGAGAAACGTGTCGAGGAGCTAACATGGCGCCTAGAGTTTGAGAAGCACTTGAGGATGGATGTTGAAGAAGCTAAGGGGCAAGAGGTTGCAAAATTACAAAATGCTTTGGAAGAAATGCAAGGCCAGCTGGATGAAGCCAATGCTGCAATTATACGTGAGAGAGAAGCAGCAAAATTGGCCATAGAACAAGCTCCACCAGTCATTAAGGAAGTACCTGTGGTTGACGAGACCAAGCTAGAAATGCTGAGAAATCATAATGAAGAACTTGAGGGGGAGGTTGGAGAGCTGAAGAAGAAAATTGAGGAATTTGAAGAAAAGTATGCTGAAGTGGAAAAGGAGAGTAAAGCTAGGCTCAAGGAGGCAGAAGAGGCACATTTGAAATCGTTGCAACTTCAAGAGGCTATTGAGAGATTGGAATCAAATTTATCTAGCCTTGAGTCTGAGAACCAGGTTCTGCGCCAGCAGGCTTTGGTTGCAGCAGACAATGAGTCCCTCTCTGAAGAAGTGCAAGCCCTCAAGAGTAAGATTGGAAGTCTAGAGGCAGAGAATGAAATTCTCCGCAACCGGCCAGTGGCTTTTGAGCATATATCTGTTCCAGCTGGAGCGCTTACAGAAAGCAAGACTTTAGATAACGGACATGTTAAGGAAGAGGAGATTAAATCAACTAAGGAACAATCTACTGTTCCCATCCTAGTTAAACAAGGTTCGCTTACAGAAAAGCAACAGGAAAATCATGATGTCCTGCTCAAGTGCTTAGCAGAAGACAAGCGTTTTGACAAGGGCAGACCAGTTGCAGCCTGTGTTGTCTACAAGACACTTCTTCAATGGAGATCTTTTGAAGCAGAGAAAACAAATATATTTGACAGAATTATTCACACAATCAGATCTTCTATAGAGAGTCAAGAAAATATCAGCGATTTTGCATATTGGCTTTCAACCACTTCCACCCTTCTCTATCTTCTTCAAAGTTCACTCAAGGCAACCAATACAAGTACTGTAGCTTCACATCGCAACCGAGCTTCTCCTGCAACTTTATTTGGTCGTATGGCATATGGTCTTCGATCATCTTCAGTGGGTATGGGAATTTCCAGTGGATACAGTGGAATGGTGGGCAAGACAAACAATCAGTCTAAAGTTGAAGCCAAGTACCCAGCACTTCTTTTTAAGCAACATCTGGCAGCATGCATTGAAAAATTGTTTGGGATGATACGTGATAATTTGAAGAAAGAAATTAGTCCTTTCTTGCATCTATGTATTCAGGCACCAAGATCAGTGAAGTCCAGATCAATAAGAGGGTCATCTAAAAATATCCATTCAAACATTGTTGCAAAACAGCAAGCATCAAGTATTCACTGGCAAAGCATTGTTAATAAGCTAGACCAAACGTTGGATATAATGTCTGAAAACCATGTTCCCTCCATGATCATGAGAAAAATCTTCTTCCAAGTTTTCTCATTCATAAATGTCCAGCTTTTCAATAGCTTGTTACTACGACGTGAGTGTTGTTCCTTCAGTAATGGAGAGTACTTGAAGTTGGGTCTGCAGGAGTTGGAGCAATGGTGTAACAAAGCTACCGATACGGTGTTACTCCAGAAATCTCAGAAAAGTTTGAATGAGATCACAGATGAATTGTGCCCG | 4437 | 42.46 | MKRHRTPPRRVVGGWVAVDCGLWRGKLHLKPKTVSLWVPTLGTPVNIIVGSHVWVEDPEDAWIEGQVIEINGKNATILTTNEKTIVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAPFGELSPHLFAVADACYRSMINEQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKFKLGDPRTFHYLNQTNCYEVANVDDAREYLETRNAMDVVGISQEEQDAIFRVVASILHLGNINFMKGKEVDSSKVKDEKSNYHLQTAAELLMCDVKALEHSLCQRVIVTPDGNITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTDFTINHYAGDVTYQADQFLDKNKDYVVAEHQALLNASRCSFVANLFPPLPEESSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGSDEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRRIQRQIRTHLTRKEFIALRRAAIHIQKLWRGQLARKLYEQMRREAASIRIQKHARAHADRKSYKKLLASAIVIQTGMRAMAARNEYRHRRRTKAAIIVQTEWRRASAISAYKQQQKATLALQCLWRSKVARKELRKLKMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRMDVEEAKGQEVAKLQNALEEMQGQLDEANAAIIREREAAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEGEVGELKKKIEEFEEKYAEVEKESKARLKEAEEAHLKSLQLQEAIERLESNLSSLESENQVLRQQALVAADNESLSEEVQALKSKIGSLEAENEILRNRPVAFEHISVPAGALTESKTLDNGHVKEEEIKSTKEQSTVPILVKQGSLTEKQQENHDVLLKCLAEDKRFDKGRPVAACVVYKTLLQWRSFEAEKTNIFDRIIHTIRSSIESQENISDFAYWLSTTSTLLYLLQSSLKATNTSTVASHRNRASPATLFGRMAYGLRSSSVGMGISSGYSGMVGKTNNQSKVEAKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVKSRSIRGSSKNIHSNIVAKQQASSIHWQSIVNKLDQTLDIMSENHVPSMIMRKIFFQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCNKATDTVLLQKSQKSLNEITDELCP | 1479 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3058115 | 3069633 | + | CcPI632755_09g003450.1 | Cco09g0345 | 186802 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g0345 | 1479 | Coils | Coil | 1095 | 1122 | - | - | |
| Cco09g0345 | 1479 | ProSiteProfiles | IQ motif profile. | 822 | 848 | - | - | |
| Cco09g0345 | 1479 | Pfam | Myosin N-terminal SH3-like domain | 49 | 87 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0345 | 1479 | Coils | Coil | 916 | 950 | - | - | |
| Cco09g0345 | 1479 | Pfam | DIL domain | 1412 | 1471 | IPR002710 | - | |
| Cco09g0345 | 1479 | Coils | Coil | 1012 | 1088 | - | - | |
| Cco09g0345 | 1479 | Pfam | Myosin head (motor domain) | 104 | 759 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0345 | 1479 | PANTHER | MYOSIN | 52 | 1458 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Cco09g0345 | 1479 | Coils | Coil | 955 | 989 | - | - | |
| Cco09g0345 | 1479 | ProSiteProfiles | IQ motif profile. | 797 | 826 | - | - | |
| Cco09g0345 | 1479 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 352 | 641 | - | - | |
| Cco09g0345 | 1479 | ProSiteProfiles | Dilute domain profile. | 1221 | 1479 | IPR002710 | - | |
| Cco09g0345 | 1479 | FunFam | Myosin XI D | 707 | 769 | - | - | |
| Cco09g0345 | 1479 | Gene3D | - | 479 | 663 | - | - | |
| Cco09g0345 | 1479 | CDD | MYSc_Myo11 | 116 | 759 | IPR036018 | - | |
| Cco09g0345 | 1479 | SMART | iq_5 | 844 | 866 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0345 | 1479 | SMART | iq_5 | 773 | 795 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0345 | 1479 | SMART | iq_5 | 796 | 818 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0345 | 1479 | SMART | iq_5 | 821 | 843 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0345 | 1479 | SMART | iq_5 | 869 | 891 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0345 | 1479 | SMART | iq_5 | 892 | 914 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0345 | 1479 | FunFam | Class V myosin | 479 | 623 | - | - | |
| Cco09g0345 | 1479 | Pfam | IQ calmodulin-binding motif | 777 | 794 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0345 | 1479 | Pfam | IQ calmodulin-binding motif | 895 | 914 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0345 | 1479 | Pfam | IQ calmodulin-binding motif | 824 | 843 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0345 | 1479 | Pfam | IQ calmodulin-binding motif | 847 | 866 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0345 | 1479 | Pfam | IQ calmodulin-binding motif | 798 | 817 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0345 | 1479 | ProSiteProfiles | Myosin motor domain profile. | 102 | 771 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0345 | 1479 | Gene3D | - | 773 | 823 | - | - | |
| Cco09g0345 | 1479 | Gene3D | - | 824 | 874 | - | - | |
| Cco09g0345 | 1479 | Gene3D | Kinesin motor domain | 105 | 702 | IPR036961 | - | |
| Cco09g0345 | 1479 | Gene3D | - | 292 | 350 | - | - | |
| Cco09g0345 | 1479 | FunFam | unconventional myosin-Va | 825 | 872 | - | - | |
| Cco09g0345 | 1479 | FunFam | unconventional myosin-Va | 776 | 824 | - | - | |
| Cco09g0345 | 1479 | FunFam | Myosin 2 | 352 | 467 | - | - | |
| Cco09g0345 | 1479 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 825 | 922 | IPR027417 | - | |
| Cco09g0345 | 1479 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 48 | 97 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0345 | 1479 | ProSiteProfiles | IQ motif profile. | 774 | 800 | - | - | |
| Cco09g0345 | 1479 | FunFam | Myosin heavy chain | 292 | 347 | - | - | |
| Cco09g0345 | 1479 | ProSiteProfiles | IQ motif profile. | 845 | 874 | - | - | |
| Cco09g0345 | 1479 | PRINTS | Myosin heavy chain signature | 469 | 497 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0345 | 1479 | PRINTS | Myosin heavy chain signature | 132 | 151 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0345 | 1479 | PRINTS | Myosin heavy chain signature | 189 | 214 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0345 | 1479 | PRINTS | Myosin heavy chain signature | 236 | 263 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0345 | 1479 | PRINTS | Myosin heavy chain signature | 522 | 550 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0345 | 1479 | Gene3D | - | 707 | 769 | - | - | |
| Cco09g0345 | 1479 | FunFam | unconventional myosin-Va | 873 | 920 | - | - | |
| Cco09g0345 | 1479 | ProSiteProfiles | IQ motif profile. | 893 | 922 | - | - | |
| Cco09g0345 | 1479 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 75 | 825 | IPR027417 | - | |
| Cco09g0345 | 1479 | SMART | DIL_2 | 1411 | 1476 | IPR002710 | - | |
| Cco09g0345 | 1479 | SMART | MYSc_2a | 96 | 772 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g0132 | Cco-Chr6:1302224 | Cco09g0345 | Cco-Chr9:3058115 | 0.00E+00 | dispersed | |
| Cco08g1134 | Cco-Chr8:23140374 | Cco09g0345 | Cco-Chr9:3058115 | 0.00E+00 | dispersed | |
| Cco09g0345 | Cco-Chr9:3058115 | Cco09g0782 | Cco-Chr9:7205743 | 0.00E+00 | dispersed | |
| Cco09g0345 | Cco-Chr9:3058115 | Cco05g0432 | Cco-Chr5:3531561 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g0345 | K10357 | - | csv:101207221 | 2658.63 |