Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0345 ATGAAACGACATCGTACCCCACCACGGCGGGTGGTGGGTGGGTGGGTGGCGGTGGACTGTGGACTGTGGAGGGGGAAGCTCCATCTAAAGCCAAAGACTGTTTCTTTGTGGGTTCCCACACTTGGGACTCCGGTGAATATCATTGTCGGATCACATGTTTGGGTTGAGGATCCTGAGGATGCTTGGATTGAAGGGCAAGTTATAGAAATTAATGGCAAAAATGCTACTATACTCACTACCAATGAAAAAACTATTGTTGCAGAAATTTCGAGTATATATCCGAAAGACACGGAGGCGCCGCCGGCGGGGGTTGACGACATGACGAAATTGGCGTATCTTCATGAACCGGGAGTTCTGCATAACCTAGCTTGTCGATTTTCTCTCAATGAAATATACACATACACCGGGAATATTCTAATTGCGGTGAATCCTTTCCGGCGACTGCCCCATTTGTATGATATTCACATGATGGAACAATATAAAGGAGCTCCTTTCGGCGAACTTAGTCCACATCTTTTCGCTGTTGCAGATGCTTGCTACAGATCGATGATTAACGAGCAAGGAAGTCAGTCCATATTAGTGAGTGGAGAGAGTGGTGCTGGTAAAACTGAGACAACAAAGATGCTCATGAGATATCTTGCATTCATGGGAGGCAGGTCAGATACTGAAGGAAGAACAGTTGAACAACAGGTTTTGGAGTCCAACCCTGTACTGGAAGCATTTGGAAATGCCAAAACCGTCAAAAACAACAATTCAAGTCGTTTTGGTAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGGGCTGCCATTCGTACATACCTTCTCGAACGGTCACGTGTTTGCCAAGTCTCAGACCCTGAGAGAAACTACCATTGTTTTTACATGCTCTGTGCAGCACCACCAGAAGATGTCAAGAAATTCAAGTTAGGAGACCCGAGGACATTTCATTATCTTAATCAAACGAATTGTTATGAAGTGGCAAATGTCGATGATGCAAGAGAGTACTTAGAGACGAGAAATGCCATGGATGTTGTCGGAATCAGCCAGGAGGAACAGGATGCTATATTTCGTGTTGTAGCTTCAATACTGCATCTTGGAAACATCAACTTCATGAAAGGGAAGGAAGTTGACTCTTCCAAAGTGAAAGACGAGAAGTCTAATTATCATCTTCAAACAGCAGCAGAGCTACTCATGTGTGATGTGAAGGCACTGGAACATTCACTCTGCCAGCGTGTCATAGTGACTCCAGATGGCAACATTACAAAGCCCTTGGACCCAGATTCAGCAGCCTTGAGTCGTGATGCATTGGCAAAAACTGTGTATTCTAGGCTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGCCAAGATCCTAATGCAGCCAGCTTAATTGGAGTTCTTGATATTTATGGTTTCGAAAGCTTCAAGATCAACAGTTTTGAGCAGCTCTGTATCAACCTGACCAATGAGAAGTTGCAGCAACATTTTAATCAGCATGTCTTCAAGATGGAGCAAGAGGAGTATACGAAGGAAGAAATAAACTGGAGCTATGTTGAGTTTGTAGATAATCAGGATGTCCTTGATCTTATTGAGAAGAAACCTGGAGGTATAATCGCCCTGCTTGATGAAGCCTGTATGTTTCCAAAGTCAACACACGAAACATTTGCTCAAAAGATGTATCAGACGTACAAAGGACATAAGCGGTTCAGCAAGCCAAAACTTGCTCGAACAGACTTCACAATAAACCATTATGCTGGAGATGTTACATACCAAGCAGATCAATTTCTTGATAAAAACAAGGACTATGTAGTAGCAGAACATCAGGCTCTTCTAAATGCCTCACGATGCTCTTTTGTTGCTAATCTTTTCCCTCCACTTCCTGAGGAGAGCTCAAAGCAATCCAAGTTTTCCTCTATTGGTACTCGGTTCAAGCAACAACTACAAGCTCTCATGGAAACATTGAATACTACAGAACCACATTATATTAGATGTGTAAAGCCCAACACAGTTTTGAAACCTGGCATCTTTGAGAACTTCAACGTGTTGAACCAATTGAGGTGTGGGGGAGTGCTCGAGGCAATTAGGATAAGTTGTGCAGGATATCCAACAAAAAGAACATTTGATGAGTTCCTTGATCGTTTTGGAATGCTTGCTCCAGATATTTCGGATGGTTCTGATGAAAAATCAGCATGCATTGCAATATGTGACAGAATGGGCTTAAAAGGTTATCAGATTGGAAAAACAAAAGTGTTCCTCAGAGCTGGACAAATGGCTGAGTTGGATGCACGACGAACTGAAATTTTGGCTAATGCTGTCAGACGCATCCAGCGGCAAATACGAACCCATCTAACTAGGAAAGAGTTTATCGCCCTGAGGAGAGCTGCAATTCATATCCAGAAACTTTGGAGAGGGCAACTTGCTCGTAAGCTGTATGAGCAAATGAGGAGAGAAGCAGCTTCAATCCGTATACAGAAGCATGCACGTGCTCACGCAGATAGAAAATCTTACAAAAAATTACTTGCATCAGCTATAGTTATTCAAACTGGTATGCGTGCAATGGCAGCTAGAAATGAGTACAGACACAGAAGAAGAACTAAGGCAGCTATCATTGTTCAGACTGAATGGCGGAGGGCATCAGCTATTTCAGCTTACAAACAGCAGCAGAAGGCAACTCTTGCCCTTCAATGCCTCTGGCGATCTAAAGTTGCAAGGAAGGAGCTTAGAAAATTAAAGATGGCTGCAAGAGAAACAGGAGCACTCAAGGAGGCCAAGGACAAATTGGAGAAACGTGTCGAGGAGCTAACATGGCGCCTAGAGTTTGAGAAGCACTTGAGGATGGATGTTGAAGAAGCTAAGGGGCAAGAGGTTGCAAAATTACAAAATGCTTTGGAAGAAATGCAAGGCCAGCTGGATGAAGCCAATGCTGCAATTATACGTGAGAGAGAAGCAGCAAAATTGGCCATAGAACAAGCTCCACCAGTCATTAAGGAAGTACCTGTGGTTGACGAGACCAAGCTAGAAATGCTGAGAAATCATAATGAAGAACTTGAGGGGGAGGTTGGAGAGCTGAAGAAGAAAATTGAGGAATTTGAAGAAAAGTATGCTGAAGTGGAAAAGGAGAGTAAAGCTAGGCTCAAGGAGGCAGAAGAGGCACATTTGAAATCGTTGCAACTTCAAGAGGCTATTGAGAGATTGGAATCAAATTTATCTAGCCTTGAGTCTGAGAACCAGGTTCTGCGCCAGCAGGCTTTGGTTGCAGCAGACAATGAGTCCCTCTCTGAAGAAGTGCAAGCCCTCAAGAGTAAGATTGGAAGTCTAGAGGCAGAGAATGAAATTCTCCGCAACCGGCCAGTGGCTTTTGAGCATATATCTGTTCCAGCTGGAGCGCTTACAGAAAGCAAGACTTTAGATAACGGACATGTTAAGGAAGAGGAGATTAAATCAACTAAGGAACAATCTACTGTTCCCATCCTAGTTAAACAAGGTTCGCTTACAGAAAAGCAACAGGAAAATCATGATGTCCTGCTCAAGTGCTTAGCAGAAGACAAGCGTTTTGACAAGGGCAGACCAGTTGCAGCCTGTGTTGTCTACAAGACACTTCTTCAATGGAGATCTTTTGAAGCAGAGAAAACAAATATATTTGACAGAATTATTCACACAATCAGATCTTCTATAGAGAGTCAAGAAAATATCAGCGATTTTGCATATTGGCTTTCAACCACTTCCACCCTTCTCTATCTTCTTCAAAGTTCACTCAAGGCAACCAATACAAGTACTGTAGCTTCACATCGCAACCGAGCTTCTCCTGCAACTTTATTTGGTCGTATGGCATATGGTCTTCGATCATCTTCAGTGGGTATGGGAATTTCCAGTGGATACAGTGGAATGGTGGGCAAGACAAACAATCAGTCTAAAGTTGAAGCCAAGTACCCAGCACTTCTTTTTAAGCAACATCTGGCAGCATGCATTGAAAAATTGTTTGGGATGATACGTGATAATTTGAAGAAAGAAATTAGTCCTTTCTTGCATCTATGTATTCAGGCACCAAGATCAGTGAAGTCCAGATCAATAAGAGGGTCATCTAAAAATATCCATTCAAACATTGTTGCAAAACAGCAAGCATCAAGTATTCACTGGCAAAGCATTGTTAATAAGCTAGACCAAACGTTGGATATAATGTCTGAAAACCATGTTCCCTCCATGATCATGAGAAAAATCTTCTTCCAAGTTTTCTCATTCATAAATGTCCAGCTTTTCAATAGCTTGTTACTACGACGTGAGTGTTGTTCCTTCAGTAATGGAGAGTACTTGAAGTTGGGTCTGCAGGAGTTGGAGCAATGGTGTAACAAAGCTACCGATACGGTGTTACTCCAGAAATCTCAGAAAAGTTTGAATGAGATCACAGATGAATTGTGCCCG 4437 42.46 MKRHRTPPRRVVGGWVAVDCGLWRGKLHLKPKTVSLWVPTLGTPVNIIVGSHVWVEDPEDAWIEGQVIEINGKNATILTTNEKTIVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAPFGELSPHLFAVADACYRSMINEQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKFKLGDPRTFHYLNQTNCYEVANVDDAREYLETRNAMDVVGISQEEQDAIFRVVASILHLGNINFMKGKEVDSSKVKDEKSNYHLQTAAELLMCDVKALEHSLCQRVIVTPDGNITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTDFTINHYAGDVTYQADQFLDKNKDYVVAEHQALLNASRCSFVANLFPPLPEESSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGSDEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRRIQRQIRTHLTRKEFIALRRAAIHIQKLWRGQLARKLYEQMRREAASIRIQKHARAHADRKSYKKLLASAIVIQTGMRAMAARNEYRHRRRTKAAIIVQTEWRRASAISAYKQQQKATLALQCLWRSKVARKELRKLKMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRMDVEEAKGQEVAKLQNALEEMQGQLDEANAAIIREREAAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEGEVGELKKKIEEFEEKYAEVEKESKARLKEAEEAHLKSLQLQEAIERLESNLSSLESENQVLRQQALVAADNESLSEEVQALKSKIGSLEAENEILRNRPVAFEHISVPAGALTESKTLDNGHVKEEEIKSTKEQSTVPILVKQGSLTEKQQENHDVLLKCLAEDKRFDKGRPVAACVVYKTLLQWRSFEAEKTNIFDRIIHTIRSSIESQENISDFAYWLSTTSTLLYLLQSSLKATNTSTVASHRNRASPATLFGRMAYGLRSSSVGMGISSGYSGMVGKTNNQSKVEAKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVKSRSIRGSSKNIHSNIVAKQQASSIHWQSIVNKLDQTLDIMSENHVPSMIMRKIFFQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCNKATDTVLLQKSQKSLNEITDELCP 1479
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 3058115 3069633 + CcPI632755_09g003450.1 Cco09g0345 186802
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0345 1479 Coils Coil 1095 1122 - -
Cco09g0345 1479 ProSiteProfiles IQ motif profile. 822 848 - -
Cco09g0345 1479 Pfam Myosin N-terminal SH3-like domain 49 87 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco09g0345 1479 Coils Coil 916 950 - -
Cco09g0345 1479 Pfam DIL domain 1412 1471 IPR002710 -
Cco09g0345 1479 Coils Coil 1012 1088 - -
Cco09g0345 1479 Pfam Myosin head (motor domain) 104 759 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco09g0345 1479 PANTHER MYOSIN 52 1458 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Cco09g0345 1479 Coils Coil 955 989 - -
Cco09g0345 1479 ProSiteProfiles IQ motif profile. 797 826 - -
Cco09g0345 1479 Gene3D Myosin VI head, motor domain, U50 subdomain 352 641 - -
Cco09g0345 1479 ProSiteProfiles Dilute domain profile. 1221 1479 IPR002710 -
Cco09g0345 1479 FunFam Myosin XI D 707 769 - -
Cco09g0345 1479 Gene3D - 479 663 - -
Cco09g0345 1479 CDD MYSc_Myo11 116 759 IPR036018 -
Cco09g0345 1479 SMART iq_5 844 866 IPR000048 GO:0005515(InterPro)
Cco09g0345 1479 SMART iq_5 773 795 IPR000048 GO:0005515(InterPro)
Cco09g0345 1479 SMART iq_5 796 818 IPR000048 GO:0005515(InterPro)
Cco09g0345 1479 SMART iq_5 821 843 IPR000048 GO:0005515(InterPro)
Cco09g0345 1479 SMART iq_5 869 891 IPR000048 GO:0005515(InterPro)
Cco09g0345 1479 SMART iq_5 892 914 IPR000048 GO:0005515(InterPro)
Cco09g0345 1479 FunFam Class V myosin 479 623 - -
Cco09g0345 1479 Pfam IQ calmodulin-binding motif 777 794 IPR000048 GO:0005515(InterPro)
Cco09g0345 1479 Pfam IQ calmodulin-binding motif 895 914 IPR000048 GO:0005515(InterPro)
Cco09g0345 1479 Pfam IQ calmodulin-binding motif 824 843 IPR000048 GO:0005515(InterPro)
Cco09g0345 1479 Pfam IQ calmodulin-binding motif 847 866 IPR000048 GO:0005515(InterPro)
Cco09g0345 1479 Pfam IQ calmodulin-binding motif 798 817 IPR000048 GO:0005515(InterPro)
Cco09g0345 1479 ProSiteProfiles Myosin motor domain profile. 102 771 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco09g0345 1479 Gene3D - 773 823 - -
Cco09g0345 1479 Gene3D - 824 874 - -
Cco09g0345 1479 Gene3D Kinesin motor domain 105 702 IPR036961 -
Cco09g0345 1479 Gene3D - 292 350 - -
Cco09g0345 1479 FunFam unconventional myosin-Va 825 872 - -
Cco09g0345 1479 FunFam unconventional myosin-Va 776 824 - -
Cco09g0345 1479 FunFam Myosin 2 352 467 - -
Cco09g0345 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 825 922 IPR027417 -
Cco09g0345 1479 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 48 97 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco09g0345 1479 ProSiteProfiles IQ motif profile. 774 800 - -
Cco09g0345 1479 FunFam Myosin heavy chain 292 347 - -
Cco09g0345 1479 ProSiteProfiles IQ motif profile. 845 874 - -
Cco09g0345 1479 PRINTS Myosin heavy chain signature 469 497 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco09g0345 1479 PRINTS Myosin heavy chain signature 132 151 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco09g0345 1479 PRINTS Myosin heavy chain signature 189 214 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco09g0345 1479 PRINTS Myosin heavy chain signature 236 263 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco09g0345 1479 PRINTS Myosin heavy chain signature 522 550 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco09g0345 1479 Gene3D - 707 769 - -
Cco09g0345 1479 FunFam unconventional myosin-Va 873 920 - -
Cco09g0345 1479 ProSiteProfiles IQ motif profile. 893 922 - -
Cco09g0345 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 825 IPR027417 -
Cco09g0345 1479 SMART DIL_2 1411 1476 IPR002710 -
Cco09g0345 1479 SMART MYSc_2a 96 772 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0132 Cco-Chr6:1302224 Cco09g0345 Cco-Chr9:3058115 0.00E+00 dispersed
Cco08g1134 Cco-Chr8:23140374 Cco09g0345 Cco-Chr9:3058115 0.00E+00 dispersed
Cco09g0345 Cco-Chr9:3058115 Cco09g0782 Cco-Chr9:7205743 0.00E+00 dispersed
Cco09g0345 Cco-Chr9:3058115 Cco05g0432 Cco-Chr5:3531561 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0345 K10357 - csv:101207221 2658.63