Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0363 ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTCGTCGAGAAGCAACCACAAGTACCGCCGCCACAGCGAGTTCTTTCCCGGCCAGATTTAGGGTTCTGTGTCGACTTGTCGATTGGCCGTCCGGTTGTTGGAGAGAAAGAAGACGACGAAGAAAAACCTAATCAGAGAGAAGATGAATCCGACGGTAATGAAGATCCACCAATTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGATGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTGTACGGCGGCGGAGGAAACATTTCCTGCCGGAGAGATCAAATTGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGGAAGAGCGTCTTCTAGAGCTAGCGATGAAGACGAAAATGGCTGTACGAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTCCTTGAAGAAAGCTTCAAAGAACACAACACTTTAAACCCTAAACAGAAGCTAGCACTGGCTAAGCAACTGAATCTTCTTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGGGCTAGGACGAAATTGAAGCAAACGGAAGTGGATTGCGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACAACGAACTCATTCTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTAACCTCAACTTCCGCCGCTTCCACCGTCGCTGCCGTCGCCACCAGTGGAGGCAAATCGACGGAGGGAGTTTCAAAACGATCTGGGTTCGCCATTGCTGGCCGACCCAGTTCTTCCTCTTTCCCATTTTCTGCTAAAACGCAGTCCCACCAGTCAACAGCTTCATGA 1002 48.8 MELGLSLGDAPKPFRFVEKQPQVPPPQRVLSRPDLGFCVDLSIGRPVVGEKEDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISCRRDQIENGVMNEVGESGRASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSAASTVAAVATSGGKSTEGVSKRSGFAIAGRPSSSSFPFSAKTQSHQSTAS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3298066 3299312 + CcPI632755_09g003630.1 Cco09g0363 186820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0363 333 Gene3D - 170 220 - -
Cco09g0363 333 SMART halz 222 265 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0363 333 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677(InterPro)
Cco09g0363 333 MobiDBLite consensus disorder prediction 292 333 - -
Cco09g0363 333 CDD homeodomain 166 223 IPR001356 GO:0003677(InterPro)
Cco09g0363 333 SUPERFAMILY Homeodomain-like 159 223 IPR009057 -
Cco09g0363 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 55 290 IPR050762 -
Cco09g0363 333 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0363 333 SMART HOX_1 164 226 IPR001356 GO:0003677(InterPro)
Cco09g0363 333 MobiDBLite consensus disorder prediction 46 68 - -
Cco09g0363 333 MobiDBLite consensus disorder prediction 1 113 - -
Cco09g0363 333 MobiDBLite consensus disorder prediction 310 333 - -
Cco09g0363 333 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco09g0363 333 FunFam Homeobox-leucine zipper protein HAT22 170 216 - -
Cco09g0363 333 Coils Coil 228 258 - -
Cco09g0363 333 Pfam Homeodomain 166 220 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0363 Cco-Chr9:3298066 Cco10g1941 Cco-Chr10:32971895 6.70E-13 dispersed
Cco01g0634 Cco-Chr1:6447626 Cco09g0363 Cco-Chr9:3298066 1.80E-35 transposed
Cco04g1550 Cco-Chr4:30894023 Cco09g0363 Cco-Chr9:3298066 1.10E-53 transposed
Cco05g0052 Cco-Chr5:523969 Cco09g0363 Cco-Chr9:3298066 4.30E-48 transposed
Cco05g2006 Cco-Chr5:29163965 Cco09g0363 Cco-Chr9:3298066 4.20E-42 transposed
Cco06g1583 Cco-Chr6:26405633 Cco09g0363 Cco-Chr9:3298066 4.90E-41 transposed
Cco07g0723 Cco-Chr7:13656262 Cco09g0363 Cco-Chr9:3298066 1.10E-34 transposed
Cco10g0249 Cco-Chr10:2652289 Cco09g0363 Cco-Chr9:3298066 1.40E-51 transposed
Cco10g0785 Cco-Chr10:14746659 Cco09g0363 Cco-Chr9:3298066 3.00E-51 transposed
Cco10g1254 Cco-Chr10:25296138 Cco09g0363 Cco-Chr9:3298066 3.70E-46 transposed
Cco10g1745 Cco-Chr10:31007523 Cco09g0363 Cco-Chr9:3298066 5.00E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59901 PF00046 Homeodomain 4.90E-15 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0363 K09338 - csv:101221600 582.022