Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0363 | ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTCGTCGAGAAGCAACCACAAGTACCGCCGCCACAGCGAGTTCTTTCCCGGCCAGATTTAGGGTTCTGTGTCGACTTGTCGATTGGCCGTCCGGTTGTTGGAGAGAAAGAAGACGACGAAGAAAAACCTAATCAGAGAGAAGATGAATCCGACGGTAATGAAGATCCACCAATTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGATGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTGTACGGCGGCGGAGGAAACATTTCCTGCCGGAGAGATCAAATTGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGGAAGAGCGTCTTCTAGAGCTAGCGATGAAGACGAAAATGGCTGTACGAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTCCTTGAAGAAAGCTTCAAAGAACACAACACTTTAAACCCTAAACAGAAGCTAGCACTGGCTAAGCAACTGAATCTTCTTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGGGCTAGGACGAAATTGAAGCAAACGGAAGTGGATTGCGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACAACGAACTCATTCTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTAACCTCAACTTCCGCCGCTTCCACCGTCGCTGCCGTCGCCACCAGTGGAGGCAAATCGACGGAGGGAGTTTCAAAACGATCTGGGTTCGCCATTGCTGGCCGACCCAGTTCTTCCTCTTTCCCATTTTCTGCTAAAACGCAGTCCCACCAGTCAACAGCTTCATGA | 1002 | 48.8 | MELGLSLGDAPKPFRFVEKQPQVPPPQRVLSRPDLGFCVDLSIGRPVVGEKEDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISCRRDQIENGVMNEVGESGRASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSAASTVAAVATSGGKSTEGVSKRSGFAIAGRPSSSSFPFSAKTQSHQSTAS | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3298066 | 3299312 | + | CcPI632755_09g003630.1 | Cco09g0363 | 186820 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0363 | 333 | Gene3D | - | 170 | 220 | - | - | |
Cco09g0363 | 333 | SMART | halz | 222 | 265 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0363 | 333 | ProSiteProfiles | 'Homeobox' domain profile. | 162 | 222 | IPR001356 | GO:0003677(InterPro) | |
Cco09g0363 | 333 | MobiDBLite | consensus disorder prediction | 292 | 333 | - | - | |
Cco09g0363 | 333 | CDD | homeodomain | 166 | 223 | IPR001356 | GO:0003677(InterPro) | |
Cco09g0363 | 333 | SUPERFAMILY | Homeodomain-like | 159 | 223 | IPR009057 | - | |
Cco09g0363 | 333 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 55 | 290 | IPR050762 | - | |
Cco09g0363 | 333 | Pfam | Homeobox associated leucine zipper | 222 | 256 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0363 | 333 | SMART | HOX_1 | 164 | 226 | IPR001356 | GO:0003677(InterPro) | |
Cco09g0363 | 333 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
Cco09g0363 | 333 | MobiDBLite | consensus disorder prediction | 1 | 113 | - | - | |
Cco09g0363 | 333 | MobiDBLite | consensus disorder prediction | 310 | 333 | - | - | |
Cco09g0363 | 333 | ProSitePatterns | 'Homeobox' domain signature. | 197 | 220 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco09g0363 | 333 | FunFam | Homeobox-leucine zipper protein HAT22 | 170 | 216 | - | - | |
Cco09g0363 | 333 | Coils | Coil | 228 | 258 | - | - | |
Cco09g0363 | 333 | Pfam | Homeodomain | 166 | 220 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g0363 | Cco-Chr9:3298066 | Cco10g1941 | Cco-Chr10:32971895 | 6.70E-13 | dispersed | |
Cco01g0634 | Cco-Chr1:6447626 | Cco09g0363 | Cco-Chr9:3298066 | 1.80E-35 | transposed | |
Cco04g1550 | Cco-Chr4:30894023 | Cco09g0363 | Cco-Chr9:3298066 | 1.10E-53 | transposed | |
Cco05g0052 | Cco-Chr5:523969 | Cco09g0363 | Cco-Chr9:3298066 | 4.30E-48 | transposed | |
Cco05g2006 | Cco-Chr5:29163965 | Cco09g0363 | Cco-Chr9:3298066 | 4.20E-42 | transposed | |
Cco06g1583 | Cco-Chr6:26405633 | Cco09g0363 | Cco-Chr9:3298066 | 4.90E-41 | transposed | |
Cco07g0723 | Cco-Chr7:13656262 | Cco09g0363 | Cco-Chr9:3298066 | 1.10E-34 | transposed | |
Cco10g0249 | Cco-Chr10:2652289 | Cco09g0363 | Cco-Chr9:3298066 | 1.40E-51 | transposed | |
Cco10g0785 | Cco-Chr10:14746659 | Cco09g0363 | Cco-Chr9:3298066 | 3.00E-51 | transposed | |
Cco10g1254 | Cco-Chr10:25296138 | Cco09g0363 | Cco-Chr9:3298066 | 3.70E-46 | transposed | |
Cco10g1745 | Cco-Chr10:31007523 | Cco09g0363 | Cco-Chr9:3298066 | 5.00E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59901 | PF00046 | Homeodomain | 4.90E-15 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0363 | K09338 | - | csv:101221600 | 582.022 |