Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0384 ATGGCGAAGACTAGGGCTCATGAGCTATCGCGAGCGTTAGCAGGTGATACATGCACAATTCGGCTGACTGAAATTTTCGGGAGGGCGACCAAGTCTATTTTGGGCTTCTTTATCATGGTGGGTCTTTGCAATGGCGTGCATTACCTTTTGAGGCCATTTTCTCAACCTCGCATTACCTCTGATACGATCGTAGGTTTGGCTGTTGGCAACTTCATTAGGAAGGAACTTGATATATCAACGATTAAGACGCTGCGTTATATCGTCGACTTTGGTATGATATGCTATATGTTTGTGCTGGGATTGGAGGTGGATCCATATGTACTCTTCAAAGCACCTACACGTGATGCTAAGGTAGCTTATGCTGGAATGATTTCGACACTCATTTTAGCCTGTTCCATAATCCCATTTATTAGCTTTGCAAAGTCAAAAGAGATCAGTTTCATAATCTCCCTCTCAACTGTCCTCTCTAGCACTGCTTCTCCTGTACTAACCCGTTTGATTACCAGTCTTAAAATCGGTAGGTCAGATATAGGCCGGCTCGTCATTGCTGCCGGAATGCATTCTGATTTTATATCCACTCTCATGATCTGTATTGGTTATCTCTTTTGCAAATGCCAAGAGACACGCATCTCCCTTATAAAAGGTTTTCAATTAGGTATTCTATTATTGATCCAGTCAGTACTGACAGCGAAGGTTTCACCGGTATTCATGAACTGGGTAAATAATGAAAACCCCGAGGGTAAACCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCGGTTGCCCTACTGTATTTGGTTACAATCCGATTCTCAGTGCATTTTTAGCTGGAACATTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTACTACCGTTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGTTGAGTGACTTTGAACCTGGACAAATAATGACATGGATTAGGTTAATTCTGCTTTTTGCTATTGTAACCGTAGGAAAAGTTGTTGGTACTGTCATTGCTGGGGCAATTTTGGGGTTTCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTGGCTATTGCTGCGAAAACAGCTGGAAAGATAACTACATCTACGAGCTTGGTGATGGTAATTGTAATCTTCTTCACAGTCGTGCATGCTCCAAAAGTTGTAGCACATATAATCAAGAGGGCAAGGAAACGCACACCTACACATCGAATGGCTCTCCAATTGCTTGATCCATCAAGTGAGCTTAAGATCTTGTTATGTATACATGGACCTCAGAACACTGCAGCAGCCATTAACATCATGGAGATTTCTCGGGGGACAGCTAACCCTGGAGTTGTTGTATATGTCACAGACATGATTGAACTTACAGATGAAATAGCATCCACATTAGTTCAAGGTGAAGGAGTGGACACCGTGACTGTAACCCACACAGGAGTGACACAAATGAGAGACCAAGTTACTTCTGCAGTTCAGAGTTATGTAGATGAAAATGGGGAAGGGATTACTCTTAGGAGAATGTTAGCTCTCTCAACATTCAATTCTATGGCTCAGGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTCCACAAGAGCCAGCGTGGAGATGGGTCGTTGAGTGAGGGCCAAGCAGCTTTCCGCTATGTAAACCGCAAGGTTCTCAGGCATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTGGAGAAAATTTCGAGGTCGTATGTATCTCAAAGTGTGGCAGTCATCTTCATTGGCGGTAAAGATGACCGAGAAGCATTAGCCTATGCTGGTCGAGTAGCAAGGCATCCCGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACTTACAGGATAAGTGTTGCTGAGCAGGAAGAGGAAATGAGACAAGATGATGAATGCTTTGCCTATTTTTACGAAAGGCATGTGGCTGGTGGGCACGTTGCTTACGTTGAAAAACACCTGGCCAGTTCCTCCGAGACATATTCTACTTTGAAATCACTGGAGGGGCAATACGCCCTCATAATCGTAGGTCGAGGTGGGAAGGTCAACTCAGTGTTAACTTTTGGGATGAATGACTGGCAACAGTGTCCAGAACTGGGTCCTATAGGGGACATTCTTTCCGGGTCTGAATTCTCTGTTAGGACCTCAGTTTTGATCATCCATCAACACAATCTAAAAGGAGAACTAGATGGACTTGATGATGACTTTTCAATTATGTAG 2373 43.83 MAKTRAHELSRALAGDTCTIRLTEIFGRATKSILGFFIMVGLCNGVHYLLRPFSQPRITSDTIVGLAVGNFIRKELDISTIKTLRYIVDFGMICYMFVLGLEVDPYVLFKAPTRDAKVAYAGMISTLILACSIIPFISFAKSKEISFIISLSTVLSSTASPVLTRLITSLKIGRSDIGRLVIAAGMHSDFISTLMICIGYLFCKCQETRISLIKGFQLGILLLIQSVLTAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCGCPTVFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVESKLSDFEPGQIMTWIRLILLFAIVTVGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAAKTAGKITTSTSLVMVIVIFFTVVHAPKVVAHIIKRARKRTPTHRMALQLLDPSSELKILLCIHGPQNTAAAINIMEISRGTANPGVVVYVTDMIELTDEIASTLVQGEGVDTVTVTHTGVTQMRDQVTSAVQSYVDENGEGITLRRMLALSTFNSMAQDICILAEELMGALIILPFHKSQRGDGSLSEGQAAFRYVNRKVLRHAPCSVGILVDRGLGSVEKISRSYVSQSVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRQDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSLEGQYALIIVGRGGKVNSVLTFGMNDWQQCPELGPIGDILSGSEFSVRTSVLIIHQHNLKGELDGLDDDFSIM 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3509401 3513153 + CcPI632755_09g003840.1 Cco09g0384 186841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0384 790 Pfam Sodium/hydrogen exchanger family 49 419 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cco09g0384 790 Gene3D - 29 429 IPR038770 -
Cco09g0384 790 FunFam Cation/H(+) antiporter 28 30 429 - -
Cco09g0384 790 Gene3D - 443 743 - -
Cco09g0384 790 PANTHER CATION/H + ANTIPORTER 37 775 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0384 K26731 - - csv:101211645 1476.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0384 Cco-Chr9:3509401 Cco09g1297 Cco-Chr9:14264336 3.40E-84 dispersed
Cco09g0384 Cco-Chr9:3509401 Cco07g0501 Cco-Chr7:6150026 1.60E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1119 Blo06g00594 . . . . Bpe10g00541 . . . . . . . . Sed09g1353 . . Bhi09g00656 Tan06g0598 Cmetu01g0797 . . . . . . . . . . . . Cone20ag1063 . . Lsi02g02561 . . . . . . . . . . . . . . Cma08g00518 . Car08g00430 . . . . . . . . . . Cla09g00367 Cam09g0397 Cec09g0401 Cco09g0384 Clacu09g0400 . Cre09g0382 . . Chy01g01852 Cme01g02457
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco02g0051 . 4 822 Antiporter Super Family AT2G13620 70.5 0.0e+00 1150.6
Cco07g0811 . 42 816 Antiporter Super Family AT2G13620 50.1 9.7e-207 717.2
Cco07g0810 . 55 712 Antiporter Super Family AT2G13620 52.2 1.0e-187 654.1
Cco04g1032 . 78 848 Antiporter Super Family AT3G53720 69.1 5.1e-290 993.8
Cco07g0811 . 114 813 Antiporter Super Family AT3G53720 50.5 1.7e-181 633.3
Cco07g0814 . 86 771 Antiporter Super Family AT3G53720 50.1 2.5e-180 629.4
Cco07g0810 . 127 722 Antiporter Super Family AT3G53720 52.1 1.7e-168 590.1
Cco07g0814 . 7 774 Antiporter Super Family AT5G41610 68.0 1.8e-298 1021.9
Cco07g0811 . 32 816 Antiporter Super Family AT5G41610 66.7 1.2e-294 1009.2
Cco07g0817 . 39 763 Antiporter Super Family AT5G41610 70.1 1.2e-289 992.6
Cco07g0810 . 45 714 Antiporter Super Family AT5G41610 70.7 1.6e-270 929.1
Cco04g1032 . 10 822 Antiporter Super Family AT5G41610 50.9 6.0e-209 724.5
Cco07g0814 . 11 791 Antiporter Super Family AT4G23700 65.2 5.4e-290 993.8
Cco07g0811 . 41 833 Antiporter Super Family AT4G23700 64.0 7.5e-284 973.4
Cco07g0810 . 55 727 Antiporter Super Family AT4G23700 67.4 2.0e-260 895.6
Cco07g0817 . 39 763 Antiporter Super Family AT4G23700 62.6 7.6e-260 893.6
Cco07g0814 . 7 791 Antiporter Super Family AT3G17630 61.5 1.5e-268 922.5
Cco07g0811 . 39 814 Antiporter Super Family AT3G17630 62.3 2.5e-268 921.8
Cco07g0817 . 39 763 Antiporter Super Family AT3G17630 63.9 1.2e-254 876.3
Cco07g0810 . 51 712 Antiporter Super Family AT3G17630 65.6 3.9e-245 844.7
Cco04g1032 . 10 824 Antiporter Super Family AT3G17630 51.6 5.6e-207 718.0
Cco07g0814 . 1 775 Antiporter Super Family AT1G64170 58.1 1.7e-240 829.3
Cco07g0811 . 42 816 Antiporter Super Family AT1G64170 57.6 2.5e-239 825.5
Cco07g0817 . 39 766 Antiporter Super Family AT1G64170 55.6 6.2e-214 741.1
Cco07g0810 . 56 709 Antiporter Super Family AT1G64170 60.1 6.0e-209 724.5
Cco02g0051 . 4 822 Antiporter Super Family AT2G13620 70.5 0.0e+00 1150.6
Cco07g0811 . 42 816 Antiporter Super Family AT2G13620 50.1 9.7e-207 717.2
Cco07g0810 . 55 712 Antiporter Super Family AT2G13620 52.2 1.0e-187 654.1
Cco07g0814 . 1 775 Antiporter Super Family AT1G64170 58.1 1.7e-240 829.3
Cco07g0811 . 42 816 Antiporter Super Family AT1G64170 57.6 2.5e-239 825.5
Cco07g0817 . 39 766 Antiporter Super Family AT1G64170 55.6 6.2e-214 741.1
Cco07g0810 . 56 709 Antiporter Super Family AT1G64170 60.1 6.0e-209 724.5
Cco07g0814 . 11 791 Antiporter Super Family AT4G23700 65.2 5.4e-290 993.8
Cco07g0811 . 41 833 Antiporter Super Family AT4G23700 64.0 7.5e-284 973.4
Cco07g0810 . 55 727 Antiporter Super Family AT4G23700 67.4 2.0e-260 895.6
Cco07g0817 . 39 763 Antiporter Super Family AT4G23700 62.6 7.6e-260 893.6
Cco07g0814 . 7 774 Antiporter Super Family AT5G41610 68.0 1.8e-298 1021.9
Cco07g0811 . 32 816 Antiporter Super Family AT5G41610 66.7 1.2e-294 1009.2
Cco07g0817 . 39 763 Antiporter Super Family AT5G41610 70.1 1.2e-289 992.6
Cco07g0810 . 45 714 Antiporter Super Family AT5G41610 70.7 1.6e-270 929.1
Cco04g1032 . 10 822 Antiporter Super Family AT5G41610 50.9 6.0e-209 724.5
Cco07g0814 . 7 791 Antiporter Super Family AT3G17630 61.5 1.5e-268 922.5
Cco07g0811 . 39 814 Antiporter Super Family AT3G17630 62.3 2.5e-268 921.8
Cco07g0817 . 39 763 Antiporter Super Family AT3G17630 63.9 1.2e-254 876.3
Cco07g0810 . 51 712 Antiporter Super Family AT3G17630 65.6 3.9e-245 844.7
Cco04g1032 . 10 824 Antiporter Super Family AT3G17630 51.6 5.6e-207 718.0
Cco04g1032 . 78 848 Antiporter Super Family AT3G53720 69.1 5.1e-290 993.8
Cco07g0811 . 114 813 Antiporter Super Family AT3G53720 50.5 1.7e-181 633.3
Cco07g0814 . 86 771 Antiporter Super Family AT3G53720 50.1 2.5e-180 629.4
Cco07g0810 . 127 722 Antiporter Super Family AT3G53720 52.1 1.7e-168 590.1
Cco09g0384 . 47 790 Antiporter Super Family AT3G52080 54.3 9.1e-234 807.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34