Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0400 | ATGGCTATGGCTGGGCGTATGAGATCGATCATTCCTCAATTCAATCAGCTTCTGAAATCGGAGTCACTCACTCAGAGACCTGCTCTTCTAAGAGCCCTACTTTGCCCCACGACTCCCAACTCCGAGGTCTCGAGGAACTATGCAACTGCTTCCAAGAAAAGAGAGGAAAAAGTTAAAGTTCCCCTGGTTTTGTTTGGGGGTTCTGGAAACTATGCCTCTGCTTTGTACCTTGCAGCAGTAAAAGCTAATTCCTTGGATAAGGTTGAGAGAGAGCTTCTTGACCTTGTCGAGGCTTCACAGAGAAGTGCCACCTTCTCTCAGTTCACAAGAGATCCCTCAGTGTGTAAAGATACCAGGGTCAAGGCTATTGAGGATATTTGTGCTTCAGCTAAATTTTCAGAAATTGTAAAAAACTTTTTGGTTATATTGGCTGAGTATGGAAGGCTGAAATACATAGACAGCATTGCAAAGAGGTTTGTAGAGTTGACAATGGCTCATCGAGGAGAGGTGAAAGCCATTGTGACTACAGTTATTCCCCTCCCTCCTGAAGAAGAGAAAGAATTAAAGGAGACCCTGCAGGATATTATTGGACAAGGGAAAAGGGTCAAGCTTGAACAGAAGATTGATCCAAGTATTCTCGGCGGACTAGTTGTAGAATTCGGCGAGAAAGTGTTCGACATGTCAATTAAGACCAGAGCACGACAGATGGAGAGGTTCTTGCGAGAACCTGCAAACCTCAACAGCCTCTGA | 750 | 44.8 | MAMAGRMRSIIPQFNQLLKSESLTQRPALLRALLCPTTPNSEVSRNYATASKKREEKVKVPLVLFGGSGNYASALYLAAVKANSLDKVERELLDLVEASQRSATFSQFTRDPSVCKDTRVKAIEDICASAKFSEIVKNFLVILAEYGRLKYIDSIAKRFVELTMAHRGEVKAIVTTVIPLPPEEEKELKETLQDIIGQGKRVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLREPANLNSL | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3641064 | 3644710 | - | CcPI632755_09g004000.1 | Cco09g0400 | 186857 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0400 | 249 | Gene3D | - | 67 | 160 | IPR026015 | - | |
Cco09g0400 | 249 | SUPERFAMILY | N-terminal domain of the delta subunit of the F1F0-ATP synthase | 68 | 169 | IPR026015 | - | |
Cco09g0400 | 249 | NCBIfam | ATP synthase F1 subunit delta | 70 | 239 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco09g0400 | 249 | PANTHER | ATP SYNTHASE DELTA CHAIN | 1 | 243 | IPR000711 | GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro) | |
Cco09g0400 | 249 | Hamap | ATP synthase subunit delta [atpD]. | 63 | 242 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco09g0400 | 249 | PRINTS | ATP synthase delta subunit signature | 137 | 148 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco09g0400 | 249 | PRINTS | ATP synthase delta subunit signature | 200 | 215 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco09g0400 | 249 | PRINTS | ATP synthase delta subunit signature | 215 | 233 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco09g0400 | 249 | PRINTS | ATP synthase delta subunit signature | 67 | 86 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco09g0400 | 249 | PRINTS | ATP synthase delta subunit signature | 148 | 162 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco09g0400 | 249 | ProSitePatterns | ATP synthase delta (OSCP) subunit signature. | 202 | 221 | IPR020781 | GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro) | |
Cco09g0400 | 249 | Pfam | ATP synthase delta (OSCP) subunit | 69 | 238 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g0341 | Cco-Chr8:6719707 | Cco09g0400 | Cco-Chr9:3641064 | 3.60E-08 | dispersed | |
Cco10g1229 | Cco-Chr10:25019161 | Cco09g0400 | Cco-Chr9:3641064 | 8.10E-86 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0400 | K02137 | - | csv:101206351 | 394.045 |