Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0400 ATGGCTATGGCTGGGCGTATGAGATCGATCATTCCTCAATTCAATCAGCTTCTGAAATCGGAGTCACTCACTCAGAGACCTGCTCTTCTAAGAGCCCTACTTTGCCCCACGACTCCCAACTCCGAGGTCTCGAGGAACTATGCAACTGCTTCCAAGAAAAGAGAGGAAAAAGTTAAAGTTCCCCTGGTTTTGTTTGGGGGTTCTGGAAACTATGCCTCTGCTTTGTACCTTGCAGCAGTAAAAGCTAATTCCTTGGATAAGGTTGAGAGAGAGCTTCTTGACCTTGTCGAGGCTTCACAGAGAAGTGCCACCTTCTCTCAGTTCACAAGAGATCCCTCAGTGTGTAAAGATACCAGGGTCAAGGCTATTGAGGATATTTGTGCTTCAGCTAAATTTTCAGAAATTGTAAAAAACTTTTTGGTTATATTGGCTGAGTATGGAAGGCTGAAATACATAGACAGCATTGCAAAGAGGTTTGTAGAGTTGACAATGGCTCATCGAGGAGAGGTGAAAGCCATTGTGACTACAGTTATTCCCCTCCCTCCTGAAGAAGAGAAAGAATTAAAGGAGACCCTGCAGGATATTATTGGACAAGGGAAAAGGGTCAAGCTTGAACAGAAGATTGATCCAAGTATTCTCGGCGGACTAGTTGTAGAATTCGGCGAGAAAGTGTTCGACATGTCAATTAAGACCAGAGCACGACAGATGGAGAGGTTCTTGCGAGAACCTGCAAACCTCAACAGCCTCTGA 750 44.8 MAMAGRMRSIIPQFNQLLKSESLTQRPALLRALLCPTTPNSEVSRNYATASKKREEKVKVPLVLFGGSGNYASALYLAAVKANSLDKVERELLDLVEASQRSATFSQFTRDPSVCKDTRVKAIEDICASAKFSEIVKNFLVILAEYGRLKYIDSIAKRFVELTMAHRGEVKAIVTTVIPLPPEEEKELKETLQDIIGQGKRVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLREPANLNSL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3641064 3644710 - CcPI632755_09g004000.1 Cco09g0400 186857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0400 249 Gene3D - 67 160 IPR026015 -
Cco09g0400 249 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 68 169 IPR026015 -
Cco09g0400 249 NCBIfam ATP synthase F1 subunit delta 70 239 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco09g0400 249 PANTHER ATP SYNTHASE DELTA CHAIN 1 243 IPR000711 GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cco09g0400 249 Hamap ATP synthase subunit delta [atpD]. 63 242 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco09g0400 249 PRINTS ATP synthase delta subunit signature 137 148 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco09g0400 249 PRINTS ATP synthase delta subunit signature 200 215 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco09g0400 249 PRINTS ATP synthase delta subunit signature 215 233 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco09g0400 249 PRINTS ATP synthase delta subunit signature 67 86 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco09g0400 249 PRINTS ATP synthase delta subunit signature 148 162 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco09g0400 249 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 202 221 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Cco09g0400 249 Pfam ATP synthase delta (OSCP) subunit 69 238 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0341 Cco-Chr8:6719707 Cco09g0400 Cco-Chr9:3641064 3.60E-08 dispersed
Cco10g1229 Cco-Chr10:25019161 Cco09g0400 Cco-Chr9:3641064 8.10E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0400 K02137 - csv:101206351 394.045