Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0403 ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATCCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCACCCTCTTCCCCCTCCTCCTCCTCCTCCTCCTCCGCCGTCTTCCCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCTCTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTCTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGACGGTGACATATCCGACCACCTTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCAACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGCATCAAGCCCTTCACTTGTAGAAAATGCACCAAAGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGTTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGCCATGGCGCCCTTGGTCTTGACTACTTTGATGACGACAATGAACCTTCTCCTGAACTCCAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA 933 52.3 MTDPNYSNSFNFIPLPSYLPPSNFPFSQCRHPLPPPPPPPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSSHSFSPDPGTGKILDGDISDHLLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNINNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQLQHQSQHGLFLHLH 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3679271 3682487 + CcPI632755_09g004030.1 Cco09g0403 186860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0403 310 Gene3D Classic Zinc Finger 141 164 - -
Cco09g0403 310 FunFam Zinc finger protein WIP2 195 277 - -
Cco09g0403 310 MobiDBLite consensus disorder prediction 50 72 - -
Cco09g0403 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Cco09g0403 310 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Cco09g0403 310 SMART c2h2final6 252 275 IPR013087 -
Cco09g0403 310 SMART c2h2final6 226 246 IPR013087 -
Cco09g0403 310 SMART c2h2final6 142 164 IPR013087 -
Cco09g0403 310 Gene3D Classic Zinc Finger 182 275 - -
Cco09g0403 310 PANTHER ZINC FINGER PROTEIN WIP2 123 300 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cco09g0403 310 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 225 249 - -
Cco09g0403 310 MobiDBLite consensus disorder prediction 26 72 - -
Cco09g0403 310 MobiDBLite consensus disorder prediction 27 49 - -
Cco09g0403 310 SUPERFAMILY beta-beta-alpha zinc fingers 142 246 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0403 Cco-Chr9:3679271 Cco10g1704 Cco-Chr10:30590448 2.90E-87 dispersed
Cco02g2486 Cco-Chr2:37194600 Cco09g0403 Cco-Chr9:3679271 2.20E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59905 PF00096 zf-C2H2 0.0016 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0403 - - - 0.0