Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0403 | ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATCCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCACCCTCTTCCCCCTCCTCCTCCTCCTCCTCCTCCGCCGTCTTCCCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCTCTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTCTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGACGGTGACATATCCGACCACCTTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCAACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGCATCAAGCCCTTCACTTGTAGAAAATGCACCAAAGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGTTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGCCATGGCGCCCTTGGTCTTGACTACTTTGATGACGACAATGAACCTTCTCCTGAACTCCAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA | 933 | 52.3 | MTDPNYSNSFNFIPLPSYLPPSNFPFSQCRHPLPPPPPPPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSSHSFSPDPGTGKILDGDISDHLLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNINNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQLQHQSQHGLFLHLH | 310 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3679271 | 3682487 | + | CcPI632755_09g004030.1 | Cco09g0403 | 186860 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0403 | 310 | Gene3D | Classic Zinc Finger | 141 | 164 | - | - | |
Cco09g0403 | 310 | FunFam | Zinc finger protein WIP2 | 195 | 277 | - | - | |
Cco09g0403 | 310 | MobiDBLite | consensus disorder prediction | 50 | 72 | - | - | |
Cco09g0403 | 310 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 142 | 169 | IPR013087 | - | |
Cco09g0403 | 310 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 144 | 164 | IPR013087 | - | |
Cco09g0403 | 310 | SMART | c2h2final6 | 252 | 275 | IPR013087 | - | |
Cco09g0403 | 310 | SMART | c2h2final6 | 226 | 246 | IPR013087 | - | |
Cco09g0403 | 310 | SMART | c2h2final6 | 142 | 164 | IPR013087 | - | |
Cco09g0403 | 310 | Gene3D | Classic Zinc Finger | 182 | 275 | - | - | |
Cco09g0403 | 310 | PANTHER | ZINC FINGER PROTEIN WIP2 | 123 | 300 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Cco09g0403 | 310 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 225 | 249 | - | - | |
Cco09g0403 | 310 | MobiDBLite | consensus disorder prediction | 26 | 72 | - | - | |
Cco09g0403 | 310 | MobiDBLite | consensus disorder prediction | 27 | 49 | - | - | |
Cco09g0403 | 310 | SUPERFAMILY | beta-beta-alpha zinc fingers | 142 | 246 | IPR036236 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g0403 | Cco-Chr9:3679271 | Cco10g1704 | Cco-Chr10:30590448 | 2.90E-87 | dispersed | |
Cco02g2486 | Cco-Chr2:37194600 | Cco09g0403 | Cco-Chr9:3679271 | 2.20E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59905 | PF00096 | zf-C2H2 | 0.0016 | CL0361 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0403 | - | - | - | 0.0 |