Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0448 ATGCGTATTACAAAGGAAGTAGGAAGCTTTGAGGACTTGTTTCCGTTCTACGAAGTTGATCGGAACATTGAGGACTTGTTTCCGTCGAATTTGATATCTGATCGACGTTGGCGCATCCGTGAGCAAAGAAAACAATGGGATGCTTTGGTTGCTGCGAAGAAGATGGCTTCAGCAGGAACTGACGAAGGCTATCACAAACGGCAAACTGCACCTAAAAGTCCTCCAATAGTGAAAATGCGGCCGATTGAAGTCCCTGCCATATCATTTGAGGAACTGAAGGGGGTTACGAAAAATTTCGATGCTGACTGTTTGATTGGAGAGGGTTCCTACGGTAGAGTATACTATGGGGTATTTACAAGTGGGCAGACTGTGGGAATCAAAAAGTTGGATGCCAGCAAACAATCGGATGATGAATTCTTATCCCAGGTCTCCATGGTTTCAAGACTAAAGCACAATAATTTTCTAAACTTGATTGGGTACTGTGTTGATGGCAATTCTCGCATTCTAGCATATGAGTATGCTTCAAATGGATCTCTTCACGACATTTTACACGGGAGGAAAGGAGTCAAAGGAGCACAACCCGGCCCTGTTCTTTCCTGGGCACAGAGAGTAAAAATTGCTGTAGGTGCTGCAAAGGGTTTGGAGTATTTGCATGAAAAGGTCGATCCTCATATCATCCATCGGGACATAAAATCCAGCAACGTACTAATATTTGATGATGATTTGGCAAAAATTGCTGACTTTGATTTGTCAAACCAAGCCCCTGATATGGCTGCACGGCTTCATTCCACCCGTGTTCTTGGAACCTTTGGCTATCATGCTCCTGAATACGCAATGACTGGACAATTGAATGCCAAGAGTGATGTGTACAGCTTTGGTGTCGTCCTGCTTGAACTTTTGACAGGAAGAAAGCCAGTTGATCATACATTGCCTCGAGGACAGCAAAGCCTCGTGACATGGGCCACGCCCAAACTTTGCGAGGATAAAGTTAAGCAATGTGTTGATGCAAAACTAGGAGAGGAGTACCCTCCAAAGTCAGTTGCAAAGTTTGCAGCGGTTGCTGCATTGTGCGTTCAATATGAAGCAGATTTCAGACCAAACATGAGTATTGTGGTCAAAGCCCTGCAGCCTCTGTTAAATGTCCGACCTGGTCCTGGCGGTGAAGCACCAACTCTTTAA 1179 44.87 MRITKEVGSFEDLFPFYEVDRNIEDLFPSNLISDRRWRIREQRKQWDALVAAKKMASAGTDEGYHKRQTAPKSPPIVKMRPIEVPAISFEELKGVTKNFDADCLIGEGSYGRVYYGVFTSGQTVGIKKLDASKQSDDEFLSQVSMVSRLKHNNFLNLIGYCVDGNSRILAYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKVDPHIIHRDIKSSNVLIFDDDLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVKQCVDAKLGEEYPPKSVAKFAAVAALCVQYEADFRPNMSIVVKALQPLLNVRPGPGGEAPTL 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4006539 4011517 - CcPI632755_09g004480.1 Cco09g0448 186905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0448 392 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 56 380 IPR052101 -
Cco09g0448 392 CDD STKc_IRAK 105 378 - -
Cco09g0448 392 Pfam Protein tyrosine and serine/threonine kinase 104 375 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0448 392 FunFam pto-interacting protein 1 175 386 - -
Cco09g0448 392 Gene3D Transferase(Phosphotransferase) domain 1 174 382 - -
Cco09g0448 392 SUPERFAMILY Protein kinase-like (PK-like) 74 375 IPR011009 -
Cco09g0448 392 SMART serkin_6 99 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0448 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0448 392 Gene3D Phosphorylase Kinase; domain 1 59 173 - -
Cco09g0448 392 ProSiteProfiles Protein kinase domain profile. 99 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0448 Cco-Chr9:4006539 Cco10g1749 Cco-Chr10:31042897 3.20E-131 dispersed
Cco10g1172 Cco-Chr10:24350094 Cco09g0448 Cco-Chr9:4006539 6.90E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87084 PF07714 PK_Tyr_Ser-Thr 1.30E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0448 K13436 - csv:101215263 643.654