Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0468 ATGGTGGCTGAAGCTGAGGTTGTTGTTTGTTCGAAGAGCCTCCCGGTTTTGGAGGTCCCGTATTTCGGTAAAGAGACCCATCTTGTGGATGAAATTGAGTCCATCGATGGTGGGATTCCGATTGATCCGACTCTCAATCGTGTTCGTGCTTCCGAATCTGTTTGTTCCAGTTCTCAATCGGATATTAAACCCATGAAGAAAATTCCAGATTCCGACGTCGATACGGAGAACGGAAGGGAATTTCCGAGCCTCCGGTCGGGGAGCTTTGCTGATATTGGCCCTAGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCTTCACATTTAGGATCGCTCTTTAAGTTTCCCAAGCCAAGTGCTTTCTATGGGGTATTCGATGGACATGGAGGTCCTGAAGCAGCAGCTTATATCAGAAAGAATGTCCTTAGACTCTTTTTTGAGGATGTTAGTTTTCCTCAAATTCCAGATATTGGTGAAGTCTTGCCTGAGGAGATAGAAAATTGTCTCCGAAAAGCATTTCTTCTAGCTGATCGAGCTCTGGCTGATGATTCCAGTGTCAGTAGTTCATCCGGGACGACGGCCCTGACAGCTCTTGTGCTTGGAAGGCATTTAATGGTGGCGAATGCTGGAGATTGCCGAGCTGTTCTCAGCCGGAATGGGGAGGCAGTAGATATGTCTCAAGACCACCGGCCAGTTTATTCTCCAGAGAAGCAACGGGTAGAAGAGTTGGGTGGCTTTGTTGATGGTGGCTATCTCAACGGCGTTTTATCGGTTTCCAGGGCATTGGGGGATTGGGACATGAAGCTCCCTGATGGTTCTCCTTCGCCTCTCATTGCAGAACCAGAATGCAGGCAGGTGGTGCTTACAGAAGAGGATGAGTTCTTGATCATAGCCTGTGATGGGATTTGGGACGTGATGTCGAGCCAACAAGCAGTCAACGTAGTTCGACAGGGGCTTCAACGTCATGATGACCCTGAGCGGTGTGCTCGAGACCTCGTCCTTCAGGCTTTGCGACTAGACTCATTCGACAACCTCACTGTTGTTGTTGTTTGCTTCTCCAGTTTCCATCCTGGCAATTCTCCACGACCACAGCAGCGGAACTTAAGATACTGCAGTCTCTCTGCACAGGCTCTTTGTAGCTTGCAAAGATGGCTGGATAACAGTGGATGCCAATGA 1185 48.35 MVAEAEVVVCSKSLPVLEVPYFGKETHLVDEIESIDGGIPIDPTLNRVRASESVCSSSQSDIKPMKKIPDSDVDTENGREFPSLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLFKFPKPSAFYGVFDGHGGPEAAAYIRKNVLRLFFEDVSFPQIPDIGEVLPEEIENCLRKAFLLADRALADDSSVSSSSGTTALTALVLGRHLMVANAGDCRAVLSRNGEAVDMSQDHRPVYSPEKQRVEELGGFVDGGYLNGVLSVSRALGDWDMKLPDGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVMSSQQAVNVVRQGLQRHDDPERCARDLVLQALRLDSFDNLTVVVVCFSSFHPGNSPRPQQRNLRYCSLSAQALCSLQRWLDNSGCQ 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4113846 4115529 - CcPI632755_09g004680.1 Cco09g0468 186925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0468 394 CDD PP2Cc 85 355 IPR001932 -
Cco09g0468 394 Gene3D - 65 359 IPR036457 -
Cco09g0468 394 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Cco09g0468 394 SMART PP2C_4 75 353 IPR001932 -
Cco09g0468 394 MobiDBLite consensus disorder prediction 59 79 - -
Cco09g0468 394 MobiDBLite consensus disorder prediction 65 79 - -
Cco09g0468 394 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Cco09g0468 394 FunFam Probable protein phosphatase 2C 22 70 358 - -
Cco09g0468 394 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169(InterPro)
Cco09g0468 394 PANTHER PROTEIN PHOSPHATASE 2C 68 355 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cco09g0468 394 SMART PP2C_SIG_2 100 355 IPR001932 -
Cco09g0468 394 SUPERFAMILY PP2C-like 80 357 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0432 Cco-Chr6:4750148 Cco09g0468 Cco-Chr9:4113846 9.80E-106 dispersed
Cco09g0324 Cco-Chr9:2817230 Cco09g0468 Cco-Chr9:4113846 7.00E-33 dispersed
Cco09g0468 Cco-Chr9:4113846 Cco11g1938 Cco-Chr11:32012260 6.10E-90 dispersed
Cco09g0468 Cco-Chr9:4113846 Cco11g1461 Cco-Chr11:27421448 4.80E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0468 K14803 - csv:101216626 712.22