Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g0502 | ATGTCAGCCATGAAAGATTCCGGGCCTCTGGACTTCAGTGCTGAAAGGGTGCTCGCAAAGGAGTTCCTAGCGAACTTTGCCGATGCAAATGGCGAAGCGAAGTACTTAAACATTTTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAGATCGATCTCGAGGATGTCTTTAATTATAAGGATTTGGACGAGGATTTCCTCAGACGTATTACAGAAAACACCCGGCGATATATTGGGATTTTTGCCGATGCTATTGATGAGCTCATGCCTGAGCCAACAGAGGCGTTTATTGATGATGATCATGACATATTAATGACACAAAGGTCTGATGATGGACCGGATACTGTTGATAACACTGACCCACGCCAAAAAATGCCTCCAGAAATCAAACGTTACTTTGAAGTTTACATTAGAGCATCTTCGAAGGGTCGCCCATTTACCATAAGAGAGGTCAAAGCATCATATATTGGTCAACTTGTGAGGATATCTGGTATTGTGACACGCTGTTCCGATGTTAAGCCATTGATGCAGGTGGCAGTTTATACATGTGAAGACTGTGGTTTTGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCTCTATTTGAGTGCCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGGAACTTAATTCTTCAACTTAGAGCATCTAAATTTCTGAAGTTTCAGGAGGCCAAACTTCAAGAGTTAGCTGAGCATGTTCCAAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCCCCAGGTGATGTTGTTGAACTATCAGGGATTTTTCTTCCTATTCCTTATACGGGGTTCAGGGCAATGCGGGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGGGGAGATGAAGAGGAACTAATTGCACGTTTGGCCGAGGATGGTGATATTTACAACAAACTGGCACGATCGTTGGCACCTGAAATTTTTGGTCATGAAGATATTAAAAAAGCTTTACTGCTTCTCCTTGTTGGCGCTCCTCATAGAAAGTTGAAAGATGGAATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCAAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCGAGGGGAGTCTACACGACTGGTAAAGGGAGCAGTGGGGTTGGTTTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTGTTAGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAGTCTGATCGTACAGCAATTCATGAAGTCATGGAGCAACAGACTGTCAGCATTGCCAAGGCTGGGATCACCACATCTCTAAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCAGCATGGGGAAGATATGACCTACGTAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTCGATCTCCTTTGGTTGATCCTAGATCGAGCTGATATGGATAATGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCTCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTACATTTCGGCCGCAAGAAGATTGTCTCCTTATGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGCATTCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATACACTACAGTGAGAACTCTACTAAGCATTCTTCGGATATCAGCTGCTCTAGCAAGACTTAGATTCTCTGAGACTGTGGCTCAGAGCGATGTCGATGAGGCTCTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGATGACCGTCAAAAATCTGGTCTAGATGCTATCTCAGATATTTATTCAATCTTGCGCGATGAAGCTGCCAGAACCAATAAAATGGATGTGAGCTATGCACACGCCCTGAACTGGATTTCTAGGAAGGGATACAGCGAAGCTCAACTAAAAGAATGTTTGGAGGAGTATGCAGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA | 2175 | 43.49 | MSAMKDSGPLDFSAERVLAKEFLANFADANGEAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTVDNTDPRQKMPPEIKRYFEVYIRASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA | 724 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4399185 | 4405246 | + | CcPI632755_09g005020.1 | Cco09g0502 | 186959 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g0502 | 724 | FunFam | DNA replication licensing factor MCM7 | 15 | 106 | - | - | |
| Cco09g0502 | 724 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 342 | 653 | IPR027417 | - | |
| Cco09g0502 | 724 | Gene3D | - | 149 | 277 | IPR012340 | - | |
| Cco09g0502 | 724 | ProSitePatterns | MCM family signature. | 441 | 449 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cco09g0502 | 724 | Pfam | MCM AAA-lid domain | 559 | 642 | IPR041562 | - | |
| Cco09g0502 | 724 | Pfam | MCM P-loop domain | 320 | 542 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco09g0502 | 724 | Gene3D | - | 317 | 649 | IPR027417 | - | |
| Cco09g0502 | 724 | Gene3D | - | 176 | 230 | - | - | |
| Cco09g0502 | 724 | ProSiteProfiles | MCM family domain profile. | 332 | 538 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco09g0502 | 724 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 18 | 694 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006270(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
| Cco09g0502 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 126 | 138 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco09g0502 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 164 | 175 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco09g0502 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 182 | 193 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco09g0502 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 199 | 211 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco09g0502 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 291 | 301 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco09g0502 | 724 | SMART | mcm | 145 | 644 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco09g0502 | 724 | CDD | MCM7 | 335 | 642 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco09g0502 | 724 | Gene3D | - | 15 | 106 | - | - | |
| Cco09g0502 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 373 | 388 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco09g0502 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 461 | 474 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco09g0502 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 485 | 497 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco09g0502 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 512 | 520 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco09g0502 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 433 | 447 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco09g0502 | 724 | FunFam | DNA replication licensing factor MCM7 | 176 | 230 | - | - | |
| Cco09g0502 | 724 | FunFam | DNA replication licensing factor MCM7 | 317 | 649 | - | - | |
| Cco09g0502 | 724 | Pfam | MCM N-terminal domain | 20 | 137 | IPR027925 | - | |
| Cco09g0502 | 724 | Pfam | MCM OB domain | 149 | 280 | IPR033762 | - | |
| Cco09g0502 | 724 | SUPERFAMILY | Nucleic acid-binding proteins | 19 | 300 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g2230 | Cco-Chr4:35857063 | Cco09g0502 | Cco-Chr9:4399185 | 1.40E-94 | dispersed | |
| Cco04g2395 | Cco-Chr4:37287667 | Cco09g0502 | Cco-Chr9:4399185 | 3.90E-92 | dispersed | |
| Cco09g0502 | Cco-Chr9:4399185 | Cco10g1289 | Cco-Chr10:25808289 | 1.60E-88 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g0502 | K02210 | - | csv:101219064 | 1402.11 |