Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0535 ATGGCTACCGATTCTCATGCCCCTACTCCAAGAGGTCTTCTCTGTAATGCTGGGGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACGTTTGTTTGCCCTTTGGATGTTATCAAGACGAGATTTCAGGTTCATGGATTGCCAAACATCGGTAAAGGGAGTCTTATAGTTGGTAGTCTGCAACAAATTTTTCATAAGGAGGGGCTACGTGGAATGTATAGAGGTCTCGCACCTACTGTGCTTGCATTACTTCCTAACTGGGCTGTTTACTTCACAATATATGGGCAGCTTAAAAGCTTTCTTGGCTCTGATGGTGAAAATCGTCAGCTTTCAATAGGTGCTAATATGATGGCTGCTTCCGGTGCCGGGGCTGCTACAACTATTGCAACCAATCCTCTATGGGTAGTTAAGACCAGGCTACAGACACAGGGAATGAAATCTGGTGTGCTACCATATAGAAATACAGTGTCTGCCTTGAGGAGAATAGCCTCTGAAGAAGGCATTCGTGGATTGTACAGTGGGCTTGTGCCTGCTTTGGCTGGTGTAAGTCACGTTGCGATCCAGTTTCCAACATATGAAAAAATAAAAAGTTATTTGGCTAGAAGAGACAATACGACAACGGACAAACTCACCGCACGCGATGTTGCGGTCGCCTCCTCTGTCTCCAAGATATTTGCTTCTACATTGACCTATCCACACGAGGTTGTACGATCCAGGCTTCAGGAACAAGGGTTTCACTCTGAGAAGCGTTATTCTGGGGTAGCCGATTGCGTAAAGAAAGTATTTCAACAAGATGGTCTCCCTGGTTTCTATCGAGGGTGTGCAACCAACCTTCTCAGGACGACGCCTGCTGCTGTCATCACATTTACAAGTTTTGAAATGATTCACCGTTTTCTTGTCAACTTATTTCCTCCCGATCCACATCCGCACACAATATGA 936 45.94 MATDSHAPTPRGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLQQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTIYGQLKSFLGSDGENRQLSIGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALRRIASEEGIRGLYSGLVPALAGVSHVAIQFPTYEKIKSYLARRDNTTTDKLTARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVADCVKKVFQQDGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVNLFPPDPHPHTI 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4676314 4679793 + CcPI632755_09g005350.1 Cco09g0535 186992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0535 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Cco09g0535 311 Gene3D Mitochondrial carrier domain 2 103 IPR023395 -
Cco09g0535 311 Gene3D Mitochondrial carrier domain 104 301 IPR023395 -
Cco09g0535 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 197 IPR018108 -
Cco09g0535 311 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 301 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(InterPro)|GO:0055085(PANTHER)
Cco09g0535 311 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 1 106 - -
Cco09g0535 311 FunFam NAD+ transporter 107 302 - -
Cco09g0535 311 Pfam Mitochondrial carrier protein 15 102 IPR018108 -
Cco09g0535 311 Pfam Mitochondrial carrier protein 108 200 IPR018108 -
Cco09g0535 311 Pfam Mitochondrial carrier protein 214 300 IPR018108 -
Cco09g0535 311 SUPERFAMILY Mitochondrial carrier 13 293 IPR023395 -
Cco09g0535 311 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085(InterPro)
Cco09g0535 311 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085(InterPro)
Cco09g0535 311 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085(InterPro)
Cco09g0535 311 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085(InterPro)
Cco09g0535 311 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085(InterPro)
Cco09g0535 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 297 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0612 Cco-Chr1:6174505 Cco09g0535 Cco-Chr9:4676314 3.80E-118 dispersed
Cco06g0528 Cco-Chr6:5737960 Cco09g0535 Cco-Chr9:4676314 5.90E-25 dispersed
Cco09g0535 Cco-Chr9:4676314 Cco09g0618 Cco-Chr9:5445028 6.90E-20 dispersed
Cco09g0535 Cco-Chr9:4676314 Cco04g0964 Cco-Chr4:25297421 8.70E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0535 K15115 - csv:101204681 581.637