Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0539 ATGGCTGCCAGAACAACCACCGCAGCCGCCTTCTACTTTCTCATCCTCATTTCCCTTTACATTTCCACTTCCGCCGCCCCCACCGGTTCAGTATGCAGCTCGACTCGAGACCCATCCTACTGCAAATCGGTTCTCCCGAATCAAACCGGCAATGTCTACTCGTACGGACGGTCGTCGTTCAGAAAGTCACTGTCGTCGTCGCAGAAATTCCTCCGGCTGGTGGAAAAATACCTCAGGTCCCGATCGTCGCTGACAGTGCCGGCGGTGAGGGCGCTGGAGGACTGCCAGCTGCTGGCGGGACTGAACATTGATTACTTAACGACGTCGTTCCGGGCGGTGAACTCGACGAGCAAAACGTTGCCGGAGATGAAAGCGGACGACGTGCAGAGTCTGCTGAGTGCGATATTGACGAATCAACAGACTTGTTTGGATGGAATTAAGGCGACGGCGGGTTCTTGGTCGCTCAAAAATGGCCTTTCTCTCCCACTTGCTGCTGATACCAAGCTCTACTCTCTGTCCTTGGCCTTCTTTACCAAAGGTTGGGTTCCAAAGAAGAAGAAAAAACCGACATGGAAAGCCGCCGGAAGACAAGGCGGGTTCAGAAATGGGCGAATGTCACTCAAAATGTCCAGCCGAACCAAAGCGATCTACGAGACGGCGACCCGCCGGAATCTGTTGCAGACCGATGACGGCGGCGACGACCAGATTGCGGTCAGGGACATCGTCGTTGTCAGTCAAGACGGCAGCGGAAATTTCACCACCATCAATGAGGCGGTTGCGGCGGCGCCGAACAACTCTGCTCCGTCCGACGGGTATTTCTTGATCTTCGTGTCGGCCGGAATTTATGAAGAATATGTGTCGATTGCGAAGAACAAGAGGCACTTGATGATGATCGGAGATGGCATTAATCAGACCGTAGTCACCGGTAATCGGAGTGTCGTTGACGGCTGGACCACCTTCAATTCCGCCACGTTTGCGGTGGTCGGACCTGGATTCGTAGCAGTAAACATGACATTCAGAAACACCGCCGGCGCCATAAAGCATCAAGCCGTAGCCGTCCGAAATGGCGCCGACTTATCAACATTCTACCTCTGCAGCTTCGAAGCCTACCAAGACACTTTATACACCCATTCCCTCCGCCAATTCTACCGCGACTGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACATTTACCCACGCCTCCCGATGTCCAACCAGTTCAACGCCATCACCGCCCAGGGCCGGACCGACCCAAATCAGAACACCGGCACCTCCATCTACAACTGCCGAATCAAGGCAGCCGACGATCTGGCCAACAACAGCGGCGCCGGCGTCAAGACGTTCCTAGGGCGGCCGTGGAAAGAATACTCAAGGACGGTTTATATGCAGAGCTTTATGGATGATTTGATTGATCCGGAGGGATGGAGGGCTTGGAATGGGGATTTTGCTTTGAACACTTCGTATTATGCGGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCGGAGAGGGTTAATTGGCCGGGATTTCATTTGATTAATGATACCGATGCTGGCAATTTCACGGCGGGGAATTTTGTGTTGGCCGACGATTGGCTGCCGCAGACCGGCGTTCCCTATACCAGCGGCCTCACGGACTAG 1674 54.18 MAARTTTAAAFYFLILISLYISTSAAPTGSVCSSTRDPSYCKSVLPNQTGNVYSYGRSSFRKSLSSSQKFLRLVEKYLRSRSSLTVPAVRALEDCQLLAGLNIDYLTTSFRAVNSTSKTLPEMKADDVQSLLSAILTNQQTCLDGIKATAGSWSLKNGLSLPLAADTKLYSLSLAFFTKGWVPKKKKKPTWKAAGRQGGFRNGRMSLKMSSRTKAIYETATRRNLLQTDDGGDDQIAVRDIVVVSQDGSGNFTTINEAVAAAPNNSAPSDGYFLIFVSAGIYEEYVSIAKNKRHLMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMSNQFNAITAQGRTDPNQNTGTSIYNCRIKAADDLANNSGAGVKTFLGRPWKEYSRTVYMQSFMDDLIDPEGWRAWNGDFALNTSYYAEFGNFGPGSNTSERVNWPGFHLINDTDAGNFTAGNFVLADDWLPQTGVPYTSGLTD 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4706801 4710588 - CcPI632755_09g005390.1 Cco09g0539 186996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0539 557 Gene3D - 236 555 IPR012334 -
Cco09g0539 557 Pfam Pectinesterase 242 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco09g0539 557 FunFam Pectinesterase 29 179 - -
Cco09g0539 557 Pfam Plant invertase/pectin methylesterase inhibitor 30 175 IPR006501 GO:0004857(InterPro)
Cco09g0539 557 FunFam Pectinesterase 235 555 - -
Cco09g0539 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Cco09g0539 557 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cco09g0539 557 SUPERFAMILY Pectin lyase-like 237 554 IPR011050 -
Cco09g0539 557 CDD PMEI-like_3 30 178 - -
Cco09g0539 557 PANTHER PECTINESTERASE 10 546 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco09g0539 557 SMART PMEI_2 22 176 IPR006501 GO:0004857(InterPro)
Cco09g0539 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2471 Cco-Chr5:33141794 Cco09g0539 Cco-Chr9:4706801 6.20E-152 dispersed
Cco09g0539 Cco-Chr9:4706801 Cco10g0003 Cco-Chr10:107308 4.30E-105 dispersed
Cco09g0539 Cco-Chr9:4706801 Cco09g0540 Cco-Chr9:4731061 1.20E-112 tandem
Cco02g0116 Cco-Chr2:1292958 Cco09g0539 Cco-Chr9:4706801 3.00E-159 transposed
Cco11g1499 Cco-Chr11:27818807 Cco09g0539 Cco-Chr9:4706801 1.50E-129 transposed
Cco06g0497 Cco-Chr6:5453474 Cco09g0539 Cco-Chr9:4706801 8.00E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0539 K01051 - csv:101205321 1014.22