Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0540 ATGTTTGGCCTCAAAAACAGAGCTCAAATCCCTTCAAATCCCACCTCCATTTCCTCCATTTCCACCATTTCCACATTCTTCTTCATTTTCTTCCTCTTCTCCTTCAAACCCATTTCTTCAAATCCCCAAATCCACCAAACCGCTCGATCCCTTTGCAATGGCACTCTGTTTCCAAACCTCTGTTTCTCAAAGCTCTCTTCTTTTCCCCAATTGGCTTCCCTCTCGCCGGAAAAGCTCGCCGGCAGCGCCCTCAACTTCACTGCCCGCGAGGTCCTCGGTGCCTACGCCAATTGCACCAAGCTCAAGACTCACCTTTACTGTGGCCTGAATCCCACCGACCGTCGGGCCCTCGACGACTGTCTTGAGCTTCTCGACGGCAGCATTGCCGAGCTCAAAGCTTCGATTTGCGATCTAGCGCCGCCGCAGTCCGCTGCCCGTCACTCCCATGATCTGTTGACATTGGTCAGCGCCGCCATGACTAACCACCGGACTTGTGTTGATGGGTTTTATAATAGTTCTGGGATTGTGAGGAGACGGGTGGAGCAGTATTTGGGGAAAATTGGACAGCATTTAAGTATTGATTTGGCGATGTTGAAGAAAATCCCTGGAGTTAATAGGGGTGCGGCGGCAGGAGAGGTGTTGCCGGAGTATGGGGCGGTGAAAGGTGGGTTTCCGAAGTGGGTTTCGGTTAAGGATCGGAGATTGTTGCAGGCGGCGGTGAATGAGACGAATTTTAATTTGGTGGTGGCGAAGGATGGCTCTGGGAATTTCACCACTGTCGGTGAGGCCGTCGCCGCCGCTCCAAATTCGAGCACCACCAGGTTTGTAATATACATAAAAGCAGGGGCGTATTTTGAGAACGTGGAAATAGAAAGGGCAAAGGCAAACTTGATGTTTATCGGCGACGGTATCGGAAAGACGCTGATAAAAGGTGACCGGAACGTCGTAGACGGCTGGACTACTTTCCGATCAGCCACCGTGGCGGTGGTTGGCACCGGGTTCATAGCAAAAGGCATAACATTTGAAAACTACGCGGGTCCAAGCAAGCACCAAGCCGTAGCCTTACGAAGCAATTCCGACTTCTCTGCATTTTACCAATGCAGTTTCATTGGCTATCAAGACACTCTCTACGTTCACTCCCTTCGTCAATTCTATCGCGAATGCGATATCTACGGTACCATCGACTTTATCTTTGGCAACGCTGCCGTCGTTTTTCAAAATTGCAACCTCTATGCTCGAAAACCCAACACTAACCAACGCAACATATTCACTGCCCAAGGTCGTGAGGACCCTAACCAAAACACAGGAATCTCAATCCTCAATTGTAAGGTTGAAGCCGCTGCCGATCTAATCCCCGTTCTTTCCTCGTTCAAAACTTACTTGGGCCGACCCTGGAAGTTGTACTCGAGGACGGTTTTTCTCCGGTCGTTTATTGGCCAGTTGGTTGACCCGGTCGGGTGGCTTGAGTGGAATGGGACGTTTGCGTTGAATACTTTGTATTATGGGGAGTATTTGAACCGTGGGCCCGGTTCAAATGTGACTGGACGAGTTACTTGGCCGGGGTATCGGGTCATTGCTAACGCAACAGAAGCGAGCCAGTTTACGGTTGAGGGGTTTATACAGGGTAGCTCGTGGTTGAACTCGACCGGGATTCCTTTCTTCTCCGGTTTGGCTTGA 1677 50.63 MFGLKNRAQIPSNPTSISSISTISTFFFIFFLFSFKPISSNPQIHQTARSLCNGTLFPNLCFSKLSSFPQLASLSPEKLAGSALNFTAREVLGAYANCTKLKTHLYCGLNPTDRRALDDCLELLDGSIAELKASICDLAPPQSAARHSHDLLTLVSAAMTNHRTCVDGFYNSSGIVRRRVEQYLGKIGQHLSIDLAMLKKIPGVNRGAAAGEVLPEYGAVKGGFPKWVSVKDRRLLQAAVNETNFNLVVAKDGSGNFTTVGEAVAAAPNSSTTRFVIYIKAGAYFENVEIERAKANLMFIGDGIGKTLIKGDRNVVDGWTTFRSATVAVVGTGFIAKGITFENYAGPSKHQAVALRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNTNQRNIFTAQGREDPNQNTGISILNCKVEAAADLIPVLSSFKTYLGRPWKLYSRTVFLRSFIGQLVDPVGWLEWNGTFALNTLYYGEYLNRGPGSNVTGRVTWPGYRVIANATEASQFTVEGFIQGSSWLNSTGIPFFSGLA 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4731061 4736968 + CcPI632755_09g005400.1 Cco09g0540 186997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0540 558 Gene3D - 240 557 IPR012334 -
Cco09g0540 558 Pfam Plant invertase/pectin methylesterase inhibitor 49 197 IPR006501 GO:0004857(InterPro)
Cco09g0540 558 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Cco09g0540 558 FunFam Pectinesterase 240 557 - -
Cco09g0540 558 Pfam Pectinesterase 246 542 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco09g0540 558 SUPERFAMILY Pectin lyase-like 244 556 IPR011050 -
Cco09g0540 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 202 IPR035513 -
Cco09g0540 558 CDD PMEI-like_3 50 203 - -
Cco09g0540 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 203 IPR035513 -
Cco09g0540 558 PANTHER PECTINESTERASE 24 548 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco09g0540 558 NCBIfam pectinesterase inhibitor domain 23 200 IPR006501 GO:0004857(InterPro)
Cco09g0540 558 SMART PMEI_2 43 197 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0043 Cco-Chr1:307140 Cco09g0540 Cco-Chr9:4731061 9.20E-138 dispersed
Cco04g1997 Cco-Chr4:34147738 Cco09g0540 Cco-Chr9:4731061 1.00E-119 dispersed
Cco05g1057 Cco-Chr5:9420749 Cco09g0540 Cco-Chr9:4731061 5.80E-132 dispersed
Cco07g1508 Cco-Chr7:29131980 Cco09g0540 Cco-Chr9:4731061 2.50E-129 dispersed
Cco09g0540 Cco-Chr9:4731061 Cco10g0003 Cco-Chr10:107308 5.20E-127 dispersed
Cco09g0539 Cco-Chr9:4706801 Cco09g0540 Cco-Chr9:4731061 1.20E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0540 K01051 - csv:101205557 1003.43