Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0578 ATGGCCGGTGCTATCAAGGTCCATGGAATTCCCACTTCCACAGCCACTGGTAGGGTTCTTGCTGCCCTTTACGAGAAGGGTCTTCAATTCGAGCTTGTGAATGTCAAATTACACGAAGGAGAACACAAGAGAGAGCCCTTCCTCTCATTGAATCCCTTTGGTCAAGTTCCTGCGTTCCAAGATGGAGATCTGGCGCTTTTTGAATCTAGAGCGATCACGCAGTACATCTCGGGAAACTATGCTAGTAATGGAACCCAGTTGATTCCTCAAGATCCCAAGAAAGGGGCGCTCGTATTAACATGGATTGAGGTTGAGAGCCACCATTTTGACCCAGTAGCCATGAAATTGGTGTTCGAGCTGTGCTTGAAGCCAGTTTTTGGGTTGGGTGAGGCAGATCCTGCAGTAGTTGAGCAAAGTGAAGCCGAGTTAGGCAAAGTTCTTGATATCTACGAGAAAAGGCTGTCTGAGTCCAAATACTTAGGAGGTGAGTCCTTCAGTTTGGCTGATCTGCACCATCTCCCTGTTCTGGGATACTTGTTGGCCACACAGTCCAAGAAACTCTTTGAATCTCGACCCCATGTTAATGCTTGGGTGGCTGATATCATAGCCAGGCCATCTTGGGCTAAAGTTCTTGAACTTCGCAAGTAA 648 47.53 MAGAIKVHGIPTSTATGRVLAALYEKGLQFELVNVKLHEGEHKREPFLSLNPFGQVPAFQDGDLALFESRAITQYISGNYASNGTQLIPQDPKKGALVLTWIEVESHHFDPVAMKLVFELCLKPVFGLGEADPAVVEQSEAELGKVLDIYEKRLSESKYLGGESFSLADLHHLPVLGYLLATQSKKLFESRPHVNAWVADIIARPSWAKVLELRK 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5084640 5085446 - CcPI632755_09g005780.1 Cco09g0578 187035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0578 215 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 215 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Cco09g0578 215 SFLD Main.5: Phi-like 4 213 - -
Cco09g0578 215 CDD GST_N_Phi 4 77 - -
Cco09g0578 215 SUPERFAMILY GST C-terminal domain-like 75 214 IPR036282 -
Cco09g0578 215 SUPERFAMILY Thioredoxin-like 5 89 IPR036249 -
Cco09g0578 215 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 215 IPR010987 -
Cco09g0578 215 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 84 IPR004045 -
Cco09g0578 215 FunFam Glutathione S-transferase F2 89 211 - -
Cco09g0578 215 Gene3D Glutaredoxin 3 88 - -
Cco09g0578 215 FunFam Glutathione S-transferase F2 4 88 - -
Cco09g0578 215 Gene3D - 91 215 - -
Cco09g0578 215 Pfam Glutathione S-transferase, C-terminal domain 111 205 IPR004046 -
Cco09g0578 215 SFLD Glutathione Transferase (cytosolic) 4 213 IPR040079 -
Cco09g0578 215 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Cco09g0578 215 CDD GST_C_Phi 93 211 IPR034347 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0578 Cco-Chr9:5084640 Cco09g0580 Cco-Chr9:5100177 4.40E-82 dispersed
Cco09g0578 Cco-Chr9:5084640 Cco09g0579 Cco-Chr9:5098258 6.70E-91 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0578 K00799 - csv:101212291 412.535