Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0580 ATGGCGAGCATTAAAGTCCATGGAAGCCCCATTTCCACTGCCACAGCCAGAGTTCTCGCTTGTCTTTATGAGAAAGATCTCGATTACGAGTTTGTTCTTCTGGATATGAAAAATAACGAGCATAAGAAACACCCCTTTCTCTCCATTAACCCGTTTGGTCAAGTTCCTGGGTTTCAAGATGGGGATCTCACCATTTTCGAATCAAGGGCCATTACTCAATACTTGGCCAACGCCTACGCCAGCAAGGGAACCCAATTGATCTCCAACGACCCGAAGAAAGCGGCGATCATATCAACGTGGATTGAAGTGGAGGGCCACCATTACGACCCACCGGCGGTTGCTCTGTCGTTTGAGCATCTAGTCAAGCCGCTGTTTGGACTCGGTGAAACTGATCCCGCAGCGGTAGCGGAGAACGAAGCCAAGCTGGGGAAAGTTCTTGACATCTACGAGAATCAGCTTAGCAGAAACAAGTTCTTGGCTGGGGATGAGTTCAGTTTGGCGGATCTGCATCACATACCCAATGTGAGCTACTTGTTCATGACGCCGTCGAAGAAGCTGTTCGAGTCACGGCCACATGTCAACGCTTGGGTGGCCAAAATCACTGCAAGGCCTTCGTGGGCTAAGGTTGTTGCCTTGCGCAACCAGAGTTAA 651 49.92 MASIKVHGSPISTATARVLACLYEKDLDYEFVLLDMKNNEHKKHPFLSINPFGQVPGFQDGDLTIFESRAITQYLANAYASKGTQLISNDPKKAAIISTWIEVEGHHYDPPAVALSFEHLVKPLFGLGETDPAAVAENEAKLGKVLDIYENQLSRNKFLAGDEFSLADLHHIPNVSYLFMTPSKKLFESRPHVNAWVAKITARPSWAKVVALRNQS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5100177 5101663 - CcPI632755_09g005800.1 Cco09g0580 187037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0580 216 Gene3D Glutaredoxin 1 87 - -
Cco09g0580 216 Gene3D - 90 214 - -
Cco09g0580 216 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 216 IPR010987 -
Cco09g0580 216 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Cco09g0580 216 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 215 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Cco09g0580 216 CDD GST_C_Phi 92 210 IPR034347 -
Cco09g0580 216 SFLD Main (cytGST) 1 212 - -
Cco09g0580 216 Pfam Glutathione S-transferase, C-terminal domain 129 204 IPR004046 -
Cco09g0580 216 SFLD Main.5: Phi-like 1 212 - -
Cco09g0580 216 CDD GST_N_Phi 4 76 - -
Cco09g0580 216 SUPERFAMILY Thioredoxin-like 1 82 IPR036249 -
Cco09g0580 216 FunFam Glutathione S-transferase F2 3 87 - -
Cco09g0580 216 FunFam Glutathione S-transferase F2 88 210 - -
Cco09g0580 216 SUPERFAMILY GST C-terminal domain-like 74 212 IPR036282 -
Cco09g0580 216 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1579 Cco-Chr8:27368058 Cco09g0580 Cco-Chr9:5100177 6.50E-49 dispersed
Cco09g0578 Cco-Chr9:5084640 Cco09g0580 Cco-Chr9:5100177 4.40E-82 dispersed
Cco09g0579 Cco-Chr9:5098258 Cco09g0580 Cco-Chr9:5100177 3.80E-78 tandem
Cco09g0580 Cco-Chr9:5100177 Cco09g0581 Cco-Chr9:5103783 6.80E-51 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0580 K00799 - csv:101212771 409.453