Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0581 ATGGCGGTGAAGGTGTACGGATTGCCGATCTCAACATGCACATCTACCGTCATTATCTGCCTTAATGAAAAGCAACTTGATTTCCAACTTCTCCATGTTGACCTTTTCAATGGTGAACACAAGCAACCTCCATTTTTGGCCATCAATCCCTTTGGCCAGATTCCAGCCCTAGAAGATGGTGATCTCACCTTATTTGAATCAAGAGCAATCACATCCTACATTGCAAACAAACACAAGGAAACAGGGCCAGATCTCCTATTGCATCACCAAAGCCCCAAAGAAGGAGCCATTGTGAAGCAATGGATAGAGGTAGAGTCTCACCATTACAACCCTGCAATAACTCCCATCATCCATGAGTTCTTCACTGCTCACCTTCGAGGCCACGAGCCCAACCAGCGCCTCATCGACCAGAACTTGGAGCGCCTACGCGCCGTTCTCGACGTGTATGAGCAGCGCCTAGGGTCCACCAAGTACCTGGGAGGGCCGTGGTACACCTTGGCCGATCTCCACCACCTCCCTTGCACGTTCTACTTCATGAAGACGCCATGGGCCTCAATGGTTCACGATCGGCCGAATGTGAAGGCTTGGTGGGATGATATTTCATCCCGCCCCGCGTTCCTTAAGGTTATTGAGGGGATGAGTACTTTTGACTTTGGTGGCGATGACAAGAAATGA 675 49.93 MAVKVYGLPISTCTSTVIICLNEKQLDFQLLHVDLFNGEHKQPPFLAINPFGQIPALEDGDLTLFESRAITSYIANKHKETGPDLLLHHQSPKEGAIVKQWIEVESHHYNPAITPIIHEFFTAHLRGHEPNQRLIDQNLERLRAVLDVYEQRLGSTKYLGGPWYTLADLHHLPCTFYFMKTPWASMVHDRPNVKAWWDDISSRPAFLKVIEGMSTFDFGGDDKK 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5103783 5105929 - CcPI632755_09g005810.1 Cco09g0581 187038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0581 224 FunFam Glutathione S-transferase F2 89 210 - -
Cco09g0581 224 SFLD Main.5: Phi-like 1 213 - -
Cco09g0581 224 SUPERFAMILY GST C-terminal domain-like 73 213 IPR036282 -
Cco09g0581 224 Pfam Glutathione S-transferase, C-terminal domain 116 204 IPR004046 -
Cco09g0581 224 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 213 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Cco09g0581 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cco09g0581 224 FunFam Glutathione S-transferase F2 2 86 - -
Cco09g0581 224 CDD GST_C_Phi 93 210 IPR034347 -
Cco09g0581 224 CDD GST_N_Phi 2 77 - -
Cco09g0581 224 SUPERFAMILY Thioredoxin-like 2 81 IPR036249 -
Cco09g0581 224 SFLD Glutathione Transferase (cytosolic) 1 213 IPR040079 -
Cco09g0581 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 224 IPR010987 -
Cco09g0581 224 Gene3D - 88 210 - -
Cco09g0581 224 Pfam Glutathione S-transferase, N-terminal domain 1 76 IPR004045 -
Cco09g0581 224 Gene3D Glutaredoxin 1 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0579 Cco-Chr9:5098258 Cco09g0581 Cco-Chr9:5103783 2.40E-48 dispersed
Cco09g0580 Cco-Chr9:5100177 Cco09g0581 Cco-Chr9:5103783 6.80E-51 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0581 K00799 - vvi:100247639 298.901