Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0581 ATGGCGGTGAAGGTGTACGGATTGCCGATCTCAACATGCACATCTACCGTCATTATCTGCCTTAATGAAAAGCAACTTGATTTCCAACTTCTCCATGTTGACCTTTTCAATGGTGAACACAAGCAACCTCCATTTTTGGCCATCAATCCCTTTGGCCAGATTCCAGCCCTAGAAGATGGTGATCTCACCTTATTTGAATCAAGAGCAATCACATCCTACATTGCAAACAAACACAAGGAAACAGGGCCAGATCTCCTATTGCATCACCAAAGCCCCAAAGAAGGAGCCATTGTGAAGCAATGGATAGAGGTAGAGTCTCACCATTACAACCCTGCAATAACTCCCATCATCCATGAGTTCTTCACTGCTCACCTTCGAGGCCACGAGCCCAACCAGCGCCTCATCGACCAGAACTTGGAGCGCCTACGCGCCGTTCTCGACGTGTATGAGCAGCGCCTAGGGTCCACCAAGTACCTGGGAGGGCCGTGGTACACCTTGGCCGATCTCCACCACCTCCCTTGCACGTTCTACTTCATGAAGACGCCATGGGCCTCAATGGTTCACGATCGGCCGAATGTGAAGGCTTGGTGGGATGATATTTCATCCCGCCCCGCGTTCCTTAAGGTTATTGAGGGGATGAGTACTTTTGACTTTGGTGGCGATGACAAGAAATGA 675 49.93 MAVKVYGLPISTCTSTVIICLNEKQLDFQLLHVDLFNGEHKQPPFLAINPFGQIPALEDGDLTLFESRAITSYIANKHKETGPDLLLHHQSPKEGAIVKQWIEVESHHYNPAITPIIHEFFTAHLRGHEPNQRLIDQNLERLRAVLDVYEQRLGSTKYLGGPWYTLADLHHLPCTFYFMKTPWASMVHDRPNVKAWWDDISSRPAFLKVIEGMSTFDFGGDDKK 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5103783 5105929 - CcPI632755_09g005810.1 Cco09g0581 187038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0581 224 FunFam Glutathione S-transferase F2 89 210 - -
Cco09g0581 224 SFLD Main.5: Phi-like 1 213 - -
Cco09g0581 224 SUPERFAMILY GST C-terminal domain-like 73 213 IPR036282 -
Cco09g0581 224 Pfam Glutathione S-transferase, C-terminal domain 116 204 IPR004046 -
Cco09g0581 224 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 213 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Cco09g0581 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cco09g0581 224 FunFam Glutathione S-transferase F2 2 86 - -
Cco09g0581 224 CDD GST_C_Phi 93 210 IPR034347 -
Cco09g0581 224 CDD GST_N_Phi 2 77 - -
Cco09g0581 224 SUPERFAMILY Thioredoxin-like 2 81 IPR036249 -
Cco09g0581 224 SFLD Glutathione Transferase (cytosolic) 1 213 IPR040079 -
Cco09g0581 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 224 IPR010987 -
Cco09g0581 224 Gene3D - 88 210 - -
Cco09g0581 224 Pfam Glutathione S-transferase, N-terminal domain 1 76 IPR004045 -
Cco09g0581 224 Gene3D Glutaredoxin 1 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0581 K00799 - - vvi:100247639 298.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0579 Cco-Chr9:5098258 Cco09g0581 Cco-Chr9:5103783 2.40E-48 dispersed
Cco09g0580 Cco-Chr9:5100177 Cco09g0581 Cco-Chr9:5103783 6.80E-51 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g258 . . . . . . Bma13g00049 . . . . . . . Sed11g1114 Cpe17g00797 . Bhi09g00854 Tan06g0843 Cmetu03g0557 . Hepe03g1914 . . Cla09g00568 Cam09g0603 Cec09g0587 Cco09g0581 Clacu09g0602 . Cre09g0576 Cone17ag0504 . . . Lsi02g02378 Csa07g01815 . Cme01g02342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01668 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g0578 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.8e-65 244.6
Cco09g0580 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 6.9e-64 240.7
Cco09g0579 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 8.8e-59 223.8
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.5e-66 248.8
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 2.0e-63 239.2
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 7.9e-60 227.3
Cco09g0580 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.2 9.5e-60 227.3
Cco09g0578 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Cco09g0579 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 2.5e-52 202.6
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.2e-64 241.1
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT1G02930 56.2 5.8e-63 237.7
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 8.0e-57 217.2
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.7 5.2e-64 241.1
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 8.6e-59 223.8
Cco09g0580 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.8 2.0e-68 256.1
Cco09g0578 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.2 1.6e-65 246.5
Cco09g0579 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.0e-61 233.8
Cco09g0581 . 1 214 Glutathione S-transferase Gene Family AT3G62760 58.4 2.0e-74 275.8
Cco09g0578 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Cco04g0940 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.3 1.6e-63 239.6
Cco04g0938 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.8 4.7e-63 238.0
Cco04g0951 . 3 217 Glutathione S-transferase Gene Family AT3G09270 51.9 2.2e-60 229.2
Cco05g0297 . 2 213 Glutathione S-transferase Gene Family AT3G09270 51.9 1.1e-59 226.9
Cco04g0953 . 3 212 Glutathione S-transferase Gene Family AT3G09270 52.8 1.1e-54 210.3
Cco05g2702 . 1 109 Glutathione S-transferase Gene Family AT1G74590 60.6 3.5e-37 152.1
Cco07g1132 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 1.2e-87 319.7
Cco07g1134 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Cco07g1133 . 1 217 Glutathione S-transferase Gene Family AT1G78380 61.3 3.2e-72 268.5
Cco01g0892 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.2e-68 253.8
Cco07g1132 . 7 214 Glutathione S-transferase Gene Family AT1G78370 64.9 3.5e-79 291.6
Cco07g1134 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Cco01g0892 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.4e-64 241.1
Cco07g1133 . 7 216 Glutathione S-transferase Gene Family AT1G78370 52.9 1.1e-61 233.4
Cco07g1132 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 5.4e-80 294.3
Cco07g1134 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.3e-80 293.5
Cco07g1133 . 1 217 Glutathione S-transferase Gene Family AT1G78340 53.9 7.1e-64 240.7
Cco01g0892 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.5e-63 238.4
Cco07g1132 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.2 2.5e-60 228.8
Cco07g1132 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 1.5e-90 329.3
Cco07g1134 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.9 2.4e-83 305.4
Cco07g1133 . 1 220 Glutathione S-transferase Gene Family AT1G17180 56.4 2.1e-71 265.8
Cco01g0892 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.7e-68 256.1
Cco07g1132 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.6 1.5e-74 276.2
Cco07g1134 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Cco07g1132 . 3 214 Glutathione S-transferase Gene Family AT3G43800 58.8 3.3e-72 268.5
Cco07g1134 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 6.9e-70 260.8
Cco07g1132 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.1 5.2e-70 261.2
Cco07g1134 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 6.4e-68 254.2
Cco01g0892 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 9.6e-64 240.4
Cco02g0032 . 55 221 Glutathione S-transferase Gene Family AT2G02390 67.7 1.1e-60 229.9
Cco05g0266 . 61 227 Glutathione S-transferase Gene Family AT2G02390 51.5 7.0e-47 184.1
Cco02g0032 . 14 224 Glutathione S-transferase Gene Family AT2G02380 64.5 3.2e-75 278.5
Cco05g0266 . 18 226 Glutathione S-transferase Gene Family AT2G02380 53.6 1.1e-59 226.9
Cco07g0857 . 37 273 Glutathione S-transferase Gene Family AT5G41210 68.4 9.1e-92 333.6
Cco07g0857 . 37 273 Glutathione S-transferase Gene Family AT5G41240 66.7 1.0e-88 324.7
Cco10g2060 . 1 235 Glutathione S-transferase Gene Family AT5G02780 67.4 6.3e-90 327.4
Cco10g2059 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.6e-83 305.4
Cco02g1483 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.5e-80 295.0
Cco02g1483 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.5e-85 313.2
Cco10g2060 . 6 233 Glutathione S-transferase Gene Family AT3G55040 60.1 1.6e-79 293.1
Cco10g2059 . 3 234 Glutathione S-transferase Gene Family AT3G55040 58.4 8.9e-78 287.3
Cco10g2060 . 1 235 Glutathione S-transferase Gene Family AT5G02790 69.8 7.6e-96 347.1
Cco10g2059 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Cco02g1483 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.7e-82 301.6
Cco02g1456 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.7 1.4e-80 296.2
Cco05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.1e-72 268.5
Cco02g1456 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 5.0e-86 314.3
Cco05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 3.9e-75 278.1
Cco05g1317 . 54 274 Glutathione S-transferase Gene Family AT5G16710 77.4 9.2e-103 370.2
Cco02g1456 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 4.9e-72 268.1
Cco11g1651 . 515 770 Glutathione S-transferase Gene Family AT1G77290 69.1 4.3e-103 371.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014346 0 1 0 1 0 1 0 1 1 0 1 1 0 1 1 0 1 2 0 1 0 1 1 1 1 1 1 0 1 2 22