Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0583 | ATGAGGAGAAAATCCAAAACCCTAAAAACGACGATGACGACGAGGAGGAAGAAGATGAAAGGGACATTGACGAGGCACTTGCAGGTTCAGTTAGGGCAAGTTTCACTCGCTCCTCTCCACCTCCACCGCTCCTCTTCCGCCGCCGCCGCTTGCTTCCAGGACTTGCCTGAATCTGAAGCACCGCCGACGGTCAACGTTTCTGACGCTCCCCCCTCCTCCTCTCCTAACTTTGAGGACAGAGATTTCATTCTTAGCCAGGACTTCTTCTGCACCCCTGACTATATCACCCCGGACAATCAAAATTTGTTGAATGGTGTGGATAACAACGAGGAATGCATTCCTTGCCCAAAATCTCCAGAGAAGATTAATACTGTGAAAACTAAGAGAAAAATACATGAAAGTGTTTTAGTACATCCTCTGAGTCCGAGTTTGTCTGGCTGCGAACAAGTTGTGGAGCTTGGAAATGACATGTTTGGATCAGATGATGTGGATATGGAGAAAGAGACAATGGCCATGCCAAAGAAAGGAAACTATGTTTCTCAATCTGCAGTTGCTCTACGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAACCCATACCTGAAAGATGCTTCAGATGTAGGCGTAGACCCATTTGGTAATCAACGAACAAAATGTGCAGGTTTTTTTGCTGCTCTGTTTAGTGGAGATGGTCTTTCAAGATATCACACTGATTTTCATGAGATAAAGCAAATAGGGACTGGAAATTTTAGCCGTGTCTTCAAGGTATTAAAGAGAATTGACGGTTGCTTATATGCTGTCAAACAAAGCACAAGACCGTTGAATCAAGACATAGAAAGGAGGAGAGCTTTGATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAAAACATTGTTGGATACTACTCTTCATGGTTTGAAAATGAACAACTCTATATTCAAATGGAGCTCTGTGATTGTAGTTTATCAATTGGCAGGTATTCCCACCCATTCTCTGAGGTAGATGCGTTGAGAGCCTTGTATCAGATTGCAAAGGCATTGCTATTTGTGCACGAGAAAGGAGTAGCACATTTAGATGTGAAACCTGACAATATTTATGTCAAAGATGGTGTCTATAAACTTGGTGATTTTGGGTGTGTTACCCTTCTTGATAAGAGCCTACCGATTGAGGAGGGTGATGCACGCTATATGCCTCAAGAAATTCTGAATGAAAGATATGATTATCTTGACAAAGTTGATATTTTCTCCTTGGGAGCTGCTATTTATGAAATTGTCCGAGGATCCACATTGCCAGAAACGCATTTTATGAACCTTAAGGAGGGAAAATTGCCACTCCTTCCTGGTCATTCATTGCAATTTCAAAACTTAATCAAGGCTATGGTGGATCCTGAACCGACACGGCGACCTTCGGCAAGGGAGGTTCTTGAGAATCCAATATTTGATAAGGTCAGCAATCATAAACAATCATAG | 1473 | 42.84 | MRRKSKTLKTTMTTRRKKMKGTLTRHLQVQLGQVSLAPLHLHRSSSAAAACFQDLPESEAPPTVNVSDAPPSSSPNFEDRDFILSQDFFCTPDYITPDNQNLLNGVDNNEECIPCPKSPEKINTVKTKRKIHESVLVHPLSPSLSGCEQVVELGNDMFGSDDVDMEKETMAMPKKGNYVSQSAVALRCRVMPPPCMKNPYLKDASDVGVDPFGNQRTKCAGFFAALFSGDGLSRYHTDFHEIKQIGTGNFSRVFKVLKRIDGCLYAVKQSTRPLNQDIERRRALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDCSLSIGRYSHPFSEVDALRALYQIAKALLFVHEKGVAHLDVKPDNIYVKDGVYKLGDFGCVTLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEIVRGSTLPETHFMNLKEGKLPLLPGHSLQFQNLIKAMVDPEPTRRPSAREVLENPIFDKVSNHKQS | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5116601 | 5121037 | + | CcPI632755_09g005830.1 | Cco09g0583 | 187040 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0583 | 490 | Gene3D | Phosphorylase Kinase; domain 1 | 229 | 318 | - | - | |
Cco09g0583 | 490 | SMART | serkin_6 | 239 | 481 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0583 | 490 | Gene3D | Transferase(Phosphotransferase) domain 1 | 319 | 486 | - | - | |
Cco09g0583 | 490 | FunFam | Wee1-like protein kinase | 318 | 485 | - | - | |
Cco09g0583 | 490 | ProSiteProfiles | Protein kinase domain profile. | 239 | 481 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0583 | 490 | Pfam | Protein kinase domain | 239 | 481 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0583 | 490 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED | 35 | 477 | IPR050339 | GO:0004672(PANTHER)|GO:0004713(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER) | |
Cco09g0583 | 490 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 356 | 368 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g0583 | 490 | ProSitePatterns | Protein kinases ATP-binding region signature. | 245 | 268 | IPR017441 | GO:0005524(InterPro) | |
Cco09g0583 | 490 | FunFam | WEE protein kinase | 229 | 317 | - | - | |
Cco09g0583 | 490 | SUPERFAMILY | Protein kinase-like (PK-like) | 232 | 485 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g0583 | Cco-Chr9:5116601 | Cco10g1352 | Cco-Chr10:26560466 | 2.30E-14 | dispersed | |
Cco09g0583 | Cco-Chr9:5116601 | Cco05g0496 | Cco-Chr5:3962123 | 3.00E-22 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87088 | PF00069 | Pkinase | 9.60E-47 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0583 | K06632 | - | csv:101213255 | 888.641 |