Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0586 ATGGATGAAAACACAGGGATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAACAATAATAATCATGATGCATGA 477 44.44 MDENTGMSERLVEFKYDFSGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5161785 5162261 - CcPI632755_09g005860.1 Cco09g0586 187043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0586 158 SUPERFAMILY Histone-fold 46 155 IPR009072 GO:0046982(InterPro)
Cco09g0586 158 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0586 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Cco09g0586 158 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cco09g0586 158 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Cco09g0586 158 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cco09g0586 158 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 40 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cco09g0586 158 FunFam Nuclear transcription factor Y subunit B-3 40 158 - -
Cco09g0586 158 Gene3D Histone, subunit A 41 158 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0586 K08065 - - csv:101204763 275.018
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1766 Cco-Chr3:32350393 Cco09g0586 Cco-Chr9:5161785 8.10E-31 dispersed
Cco06g1709 Cco-Chr6:27627850 Cco09g0586 Cco-Chr9:5161785 5.20E-12 dispersed
Cco09g0586 Cco-Chr9:5161785 Cco10g0413 Cco-Chr10:4919341 3.40E-39 dispersed
Cco09g0586 Cco-Chr9:5161785 Cco02g1497 Cco-Chr2:27515262 5.00E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g243 Blo05g00317 . Bda04g00601 . . Bpe06g00510 . . . Cmo17g01087 . . . . . . . . . . . . . . Cla09g00572 Cam09g0608 Cec09g0592 Cco09g0586 Clacu09g0607 . Cre09g0581 Cone17ag0499 Cone20ag0927 . . Lsi02g02373 . . Cme01g02349 . . . . . . . . . . . . Cma17g01111 . . . Cpe12g00955 . . . . . . . . . . . . . . . . Chy01g01662 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0431 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.1e-49 190.7
Cco02g1012 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.2e-38 154.5
Cco10g0413 . 6 127 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.6 6.1e-37 151.4
Cco10g0431 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Cco07g1001 . 9 137 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Cco02g1012 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cco10g0413 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.8 1.1e-50 196.4
Cco07g1001 . 28 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.9e-47 184.1
Cco10g2051 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.3e-43 172.9
Cco02g1497 . 397 510 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.1 3.0e-43 171.8
Cco09g0586 . 44 139 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Cco02g1497 . 384 500 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 5.9e-49 190.7
Cco10g2051 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.0e-48 188.3
Cco02g1012 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cco10g0413 . 8 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.7e-41 165.2
Cco07g1001 . 15 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Cco09g0586 . 32 135 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.2e-38 156.4
Cco09g0586 . 42 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Cco10g0413 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.5e-39 159.5
Cco02g1012 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.8e-39 157.5
Cco07g1001 . 31 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.9e-38 154.5
Cco10g2051 . 1 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.3 3.4e-61 231.5
Cco02g1497 . 390 549 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 4.8e-55 211.1
Cco02g1012 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cco07g1001 . 30 135 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.9e-41 164.9
Cco10g0413 . 2 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.8 3.9e-41 164.9
Cco09g0586 . 43 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.7e-37 150.6
Cco07g1001 . 18 132 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Cco02g1012 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Cco10g2051 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.3e-41 166.8
Cco10g0413 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.2e-41 166.0
Cco02g1497 . 410 504 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Cco09g0586 . 20 144 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.7e-39 159.1
Cco02g1012 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.2e-52 201.4
Cco10g0413 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.3 1.0e-50 196.8
Cco07g1001 . 26 131 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.4e-45 177.2
Cco02g1497 . 410 520 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 6.0e-43 171.0
Cco10g2051 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 5.1e-42 167.9
Cco09g0586 . 44 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cco10g2051 . 12 170 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.9 1.4e-57 219.5
Cco02g1497 . 395 548 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.8 8.3e-55 210.3
Cco02g1012 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Cco10g0413 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.4e-41 166.4
Cco07g1001 . 19 123 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.8e-41 164.1
Cco09g0586 . 43 145 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005137 2 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 2 2 2 5 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59917 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cco TF