Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0586 ATGGATGAAAACACAGGGATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAACAATAATAATCATGATGCATGA 477 44.44 MDENTGMSERLVEFKYDFSGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5161785 5162261 - CcPI632755_09g005860.1 Cco09g0586 187043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0586 158 SUPERFAMILY Histone-fold 46 155 IPR009072 GO:0046982(InterPro)
Cco09g0586 158 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0586 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Cco09g0586 158 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cco09g0586 158 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Cco09g0586 158 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cco09g0586 158 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 40 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cco09g0586 158 FunFam Nuclear transcription factor Y subunit B-3 40 158 - -
Cco09g0586 158 Gene3D Histone, subunit A 41 158 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1766 Cco-Chr3:32350393 Cco09g0586 Cco-Chr9:5161785 8.10E-31 dispersed
Cco06g1709 Cco-Chr6:27627850 Cco09g0586 Cco-Chr9:5161785 5.20E-12 dispersed
Cco09g0586 Cco-Chr9:5161785 Cco10g0413 Cco-Chr10:4919341 3.40E-39 dispersed
Cco09g0586 Cco-Chr9:5161785 Cco02g1497 Cco-Chr2:27515262 5.00E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59917 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0586 K08065 - csv:101204763 275.018