Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0586 | ATGGATGAAAACACAGGGATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAACAATAATAATCATGATGCATGA | 477 | 44.44 | MDENTGMSERLVEFKYDFSGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA | 158 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5161785 | 5162261 | - | CcPI632755_09g005860.1 | Cco09g0586 | 187043 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0586 | 158 | SUPERFAMILY | Histone-fold | 46 | 155 | IPR009072 | GO:0046982(InterPro) | |
Cco09g0586 | 158 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 80 | 96 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0586 | 158 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 49 | 113 | IPR003958 | - | |
Cco09g0586 | 158 | PRINTS | CCAAT-binding transcription factor subunit A signature | 77 | 95 | - | - | |
Cco09g0586 | 158 | PRINTS | CCAAT-binding transcription factor subunit A signature | 115 | 133 | - | - | |
Cco09g0586 | 158 | PRINTS | CCAAT-binding transcription factor subunit A signature | 96 | 114 | - | - | |
Cco09g0586 | 158 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 40 | 148 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Cco09g0586 | 158 | FunFam | Nuclear transcription factor Y subunit B-3 | 40 | 158 | - | - | |
Cco09g0586 | 158 | Gene3D | Histone, subunit A | 41 | 158 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1766 | Cco-Chr3:32350393 | Cco09g0586 | Cco-Chr9:5161785 | 8.10E-31 | dispersed | |
Cco06g1709 | Cco-Chr6:27627850 | Cco09g0586 | Cco-Chr9:5161785 | 5.20E-12 | dispersed | |
Cco09g0586 | Cco-Chr9:5161785 | Cco10g0413 | Cco-Chr10:4919341 | 3.40E-39 | dispersed | |
Cco09g0586 | Cco-Chr9:5161785 | Cco02g1497 | Cco-Chr2:27515262 | 5.00E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59917 | PF00808 | CBFD_NFYB_HMF | 6.70E-27 | CL0012 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0586 | K08065 | - | csv:101204763 | 275.018 |