Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0587 ATGGGAATCTCTAACATTACAGGTGAAATTCATCATCCAAACTTGTCTTCAGGCAACAATGTGGAAGATCAATTAGAAGAAGTTGAACAAAACAATAATCAACATCAACTTCTTAATCACTTCCTCTATGGCTCTCCCAATGGAGATCAAACCAACTCCCATGGCTCATCTAATTCACTTGATCCCCACCAACAAAGAGTTAAGAAGAAGCGAAATCTTCCCGGCGCTCCAGATCCAAATGCTGAAGTTATTGCTCTATCACCAACAACCCTAATGGCTAGAAATAGGTTTGTGTGTGAGATTTGCAACAAGGGGTTTCAAAGAGATCAGAACCTTCAATTGCATAGGAGAGGCCACAACCTGCCATGGAAACTCCGGCAAAGAACTGGCACCGAAGTGAAGAAAAGGGTCTATGTGTGCCCCGAACTGACATGCGTTCATCACAACCCGGCCCGAGCTCTCGGCGATCTTACCGGAATTAAGAAGCATTTTAGTAGAAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCCAAGAAATATGCAGTTCAATCTGATTTGAAAGCTCATCAAAAGACTTGTGGCACTAGGGAATACAAATGTGATTGTGGAACTCTATTTTCCAGAAGGGACAGCTTCATCACCCACAGAGCCTTTTGCAATGCATTAACAGAAGAAAACAACAAACTAAAGCAAGGAATTCTCAATAATAATAATAATAATAATGATAACATAGAACCAATCTCAATTATCTCCACTCCAAAACTCCCTCATTTTGGCACATCAATCATCCCTGAATTCAACCCTTATGATCAAAAAAACCCTTTTAAATCCCTCCCCCAAGAACTCAGCAACTCGGTCCCGGCCACCGGTGCACCTGGAGGCTTGTTCATGGTCGGACCCCGAAGCAGCAACAACTCTTCTTCTTTTTCAAGCCTTAAGCTCAGCTCCACCACCTCTTCGCGCTTTAGTTGCCTTTATGATAGTAAAAATGGTTGCCTTCAGGATTCTGGGTCGGTAACAGCAGCATTGGTAACGTCGGCCACCGCCTTGTTACAGAAAGCTGCGCAAATAGGAGCAACGACAAGTTCCGTTGGTGTTCTGAAGTCACCATTGTTGGAAATACCTCATTCTGATGATCAAGCAGACATGGTAGGGATGAATATGGGAATGTACGGACACATGATGATGATGAAAGAACAAGAGAATTGTAGTAGCAACAACTCAAGTTTTGTCGTCCACGAAAAGGGCCAGTGGCGACCAATGTCGAGATTTTCCGGTGGCAATAACGGCGGCGAAGAGAGTCAGATGATGACTTTGGATTTGTTGGGAGAAAGAGGGTGGAGGCTGAGGCAATTGCAGGGAGATGAAAGCCACCATCACCAGCAAGAGATGATGCCAATTATGAAGCATTTTGAGATGCACAACTTTCGTGGGGATTCAAATGTTGACAAATCTATATTTGAGTATTGA 1476 43.56 MGISNITGEIHHPNLSSGNNVEDQLEEVEQNNNQHQLLNHFLYGSPNGDQTNSHGSSNSLDPHQQRVKKKRNLPGAPDPNAEVIALSPTTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGTEVKKRVYVCPELTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHQKTCGTREYKCDCGTLFSRRDSFITHRAFCNALTEENNKLKQGILNNNNNNNDNIEPISIISTPKLPHFGTSIIPEFNPYDQKNPFKSLPQELSNSVPATGAPGGLFMVGPRSSNNSSSFSSLKLSSTTSSRFSCLYDSKNGCLQDSGSVTAALVTSATALLQKAAQIGATTSSVGVLKSPLLEIPHSDDQADMVGMNMGMYGHMMMMKEQENCSSNNSSFVVHEKGQWRPMSRFSGGNNGGEESQMMTLDLLGERGWRLRQLQGDESHHHQQEMMPIMKHFEMHNFRGDSNVDKSIFEY 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5188438 5191643 + CcPI632755_09g005870.1 Cco09g0587 187044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0587 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Cco09g0587 491 MobiDBLite consensus disorder prediction 40 62 - -
Cco09g0587 491 SUPERFAMILY beta-beta-alpha zinc fingers 96 194 IPR036236 -
Cco09g0587 491 Coils Coil 18 38 - -
Cco09g0587 491 SMART c2h2final6 97 119 IPR013087 -
Cco09g0587 491 SMART c2h2final6 138 168 IPR013087 -
Cco09g0587 491 SMART c2h2final6 173 193 IPR013087 -
Cco09g0587 491 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cco09g0587 491 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 172 196 - -
Cco09g0587 491 FunFam protein indeterminate-domain 5, chloroplastic-like 151 230 - -
Cco09g0587 491 Gene3D Classic Zinc Finger 76 142 - -
Cco09g0587 491 Gene3D Classic Zinc Finger 152 231 - -
Cco09g0587 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 201 IPR013087 -
Cco09g0587 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 54 459 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco09g0587 491 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 134 168 - -
Cco09g0587 491 FunFam protein indeterminate-domain 12-like 76 144 - -
Cco09g0587 491 Pfam Zinc finger, C2H2 type 97 119 IPR013087 -
Cco09g0587 491 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 199 239 - -
Cco09g0587 491 MobiDBLite consensus disorder prediction 40 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1769 Cco-Chr3:32366608 Cco09g0587 Cco-Chr9:5188438 1.70E-88 dispersed
Cco08g1706 Cco-Chr8:28416846 Cco09g0587 Cco-Chr9:5188438 3.50E-81 dispersed
Cco09g0587 Cco-Chr9:5188438 Cco10g2030 Cco-Chr10:33714856 4.20E-80 dispersed
Cco09g0587 Cco-Chr9:5188438 Cco04g1089 Cco-Chr4:26345648 3.10E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59918 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0587 - - - 0.0