Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0611 | ATGGATCCAATGGCTTTTCTGTCGCAATTGGGGCTGAAAGCAGACCGGGAAGCGGCGCACTTCACGTTTTTTGCGGTGCTACTCTTTGTCTGTTATCTAATTGTTCGTCTTTTTGAGAAGAAACGTTGGCTGAATGAGTCAATTACTTCCCTAGCTATTGGAATTTTCACTGGAATTATCGTTCTCCTAACGACTAGAGGAAAAAGTTCTCACATCCTAGAATTCAATGAACAGCTTTTCTTCATTTACCTTCTTCCACCCATAATATTTAATGCTGGGTTTCAGGTGAAGAAGAAACAGTTCTTTCGCAACTTTCTGGCAATCTTATTGTTTGGTGCTTTTGGAAGTGTGATATCATTCTTCATCATATCACTAGGTTCCCTCAACTTATTCAAGATATTGGATGTTGGCTCAGTAGACACGCAGGATTGTTTTGCACTTGGAGCAATCTTAACAGCGACAGATAGTGTTTGCACCTTGCAAGTTCTTAAACAAGATGAGACACCTTTACTTTATAGTCTGGTCTTTGGGGAAGGTGTGGTCAATGATGCTACCTCTGTGGTACTCTTCAATGCAATCAAGAAATTTGACCTCTCTCACATCACTTCAACAAATGCCATTCGGTTAGCTGGAAGTTTCTTAGGTTTGTTCTTGGGAAGCACACTACTGGGAATTGCAGTTGGGCTGCTATGTGCATTTATCATAAAGAAGCTATCCTTAGGCAGGCACCCTACAGATTATGAAGTTGTTCCGATGATTTTGATGGCCTACCTTTCATATATGATTGCTGAATTGTTGCTTCTTAGTGGTATTCTTAGCGTGTTCTTTTGTGGGATTGTCATGTCTCACTACGCATCTTGGAATAATAGGACTGACAGTACCAATAATGGGATTGGCAGTTCCAGACTAATACCACGCCATGCTTTTGCGACATTATCTTTCGTAGCAGAGATCTTCATCTTCCTTTATGTTGGTATGGATGCATTGGATATTGAGAAGTGGAATGTTGTTAGAGAAAGGCCTGGGAAATCAGTTGGAGCAAGTCTTATACTGCTAGGCCTTGTTCTTGTTGGAAGAGCAGCTTTTGTATTCCCACTCTCTTTCGTTTCCAACTTGACCAGAAAGCACAAAAAAGACCATATTGGGTTTAAACAACAGTTTACGATTTGGTGGGCTGGACTCATGAGAGGTGCTGTATCAGTGGCACTTGCCTATCATCAGTTTGCAAGGTCAGAAGAAAAGGAACAAGGGGCTTCGATAATGATAACTAGCACCATCATAATTGTTCTCTTCACAAACGTGGTGTTTGGATTGTTGACCAAGTCCATAGTAAGACGAATGATTCCTCGAATTAACCACGAGTCAAGACATTTATATTTTCCCTTACTTCAAGAATTGAGTGATTTGTTGCTTGATGAGAATGATATTGAATCCGACACCAACGAACTTAACCAACTTCCTCCCGACAGTTTCATGTCGTTTATGAAATCTCCAACTCAATGTCTCCATTATTATTGGTACAAGTTTGATGATTGCTTCATGCGTCCTGTTTTTGGAGGGAGTGAATCTTCATTGGAGCATCTCACTCCCTCAGCTTCTCCCTGA | 1605 | 40.93 | MDPMAFLSQLGLKADREAAHFTFFAVLLFVCYLIVRLFEKKRWLNESITSLAIGIFTGIIVLLTTRGKSSHILEFNEQLFFIYLLPPIIFNAGFQVKKKQFFRNFLAILLFGAFGSVISFFIISLGSLNLFKILDVGSVDTQDCFALGAILTATDSVCTLQVLKQDETPLLYSLVFGEGVVNDATSVVLFNAIKKFDLSHITSTNAIRLAGSFLGLFLGSTLLGIAVGLLCAFIIKKLSLGRHPTDYEVVPMILMAYLSYMIAELLLLSGILSVFFCGIVMSHYASWNNRTDSTNNGIGSSRLIPRHAFATLSFVAEIFIFLYVGMDALDIEKWNVVRERPGKSVGASLILLGLVLVGRAAFVFPLSFVSNLTRKHKKDHIGFKQQFTIWWAGLMRGAVSVALAYHQFARSEEKEQGASIMITSTIIIVLFTNVVFGLLTKSIVRRMIPRINHESRHLYFPLLQELSDLLLDENDIESDTNELNQLPPDSFMSFMKSPTQCLHYYWYKFDDCFMRPVFGGSESSLEHLTPSASP | 534 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5397902 | 5403432 | + | CcPI632755_09g006110.1 | Cco09g0611 | 187068 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0611 | 534 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 20 | 525 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
Cco09g0611 | 534 | Gene3D | - | 139 | 192 | - | - | |
Cco09g0611 | 534 | PRINTS | Na+/H+ exchanger signature | 93 | 107 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g0611 | 534 | PRINTS | Na+/H+ exchanger signature | 108 | 116 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g0611 | 534 | PRINTS | Na+/H+ exchanger signature | 79 | 90 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g0611 | 534 | PRINTS | Na+/H+ exchanger signature | 148 | 158 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g0611 | 534 | Pfam | Sodium/hydrogen exchanger family | 27 | 445 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0554 | Cco-Chr6:5972658 | Cco09g0611 | Cco-Chr9:5397902 | 9.20E-161 | dispersed | |
Cco09g0611 | Cco-Chr9:5397902 | Cco09g2294 | Cco-Chr9:37171102 | 4.20E-134 | dispersed | |
Cco09g0610 | Cco-Chr9:5387198 | Cco09g0611 | Cco-Chr9:5397902 | 7.70E-172 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0611 | - | - | - | 0.0 |