Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0611 ATGGATCCAATGGCTTTTCTGTCGCAATTGGGGCTGAAAGCAGACCGGGAAGCGGCGCACTTCACGTTTTTTGCGGTGCTACTCTTTGTCTGTTATCTAATTGTTCGTCTTTTTGAGAAGAAACGTTGGCTGAATGAGTCAATTACTTCCCTAGCTATTGGAATTTTCACTGGAATTATCGTTCTCCTAACGACTAGAGGAAAAAGTTCTCACATCCTAGAATTCAATGAACAGCTTTTCTTCATTTACCTTCTTCCACCCATAATATTTAATGCTGGGTTTCAGGTGAAGAAGAAACAGTTCTTTCGCAACTTTCTGGCAATCTTATTGTTTGGTGCTTTTGGAAGTGTGATATCATTCTTCATCATATCACTAGGTTCCCTCAACTTATTCAAGATATTGGATGTTGGCTCAGTAGACACGCAGGATTGTTTTGCACTTGGAGCAATCTTAACAGCGACAGATAGTGTTTGCACCTTGCAAGTTCTTAAACAAGATGAGACACCTTTACTTTATAGTCTGGTCTTTGGGGAAGGTGTGGTCAATGATGCTACCTCTGTGGTACTCTTCAATGCAATCAAGAAATTTGACCTCTCTCACATCACTTCAACAAATGCCATTCGGTTAGCTGGAAGTTTCTTAGGTTTGTTCTTGGGAAGCACACTACTGGGAATTGCAGTTGGGCTGCTATGTGCATTTATCATAAAGAAGCTATCCTTAGGCAGGCACCCTACAGATTATGAAGTTGTTCCGATGATTTTGATGGCCTACCTTTCATATATGATTGCTGAATTGTTGCTTCTTAGTGGTATTCTTAGCGTGTTCTTTTGTGGGATTGTCATGTCTCACTACGCATCTTGGAATAATAGGACTGACAGTACCAATAATGGGATTGGCAGTTCCAGACTAATACCACGCCATGCTTTTGCGACATTATCTTTCGTAGCAGAGATCTTCATCTTCCTTTATGTTGGTATGGATGCATTGGATATTGAGAAGTGGAATGTTGTTAGAGAAAGGCCTGGGAAATCAGTTGGAGCAAGTCTTATACTGCTAGGCCTTGTTCTTGTTGGAAGAGCAGCTTTTGTATTCCCACTCTCTTTCGTTTCCAACTTGACCAGAAAGCACAAAAAAGACCATATTGGGTTTAAACAACAGTTTACGATTTGGTGGGCTGGACTCATGAGAGGTGCTGTATCAGTGGCACTTGCCTATCATCAGTTTGCAAGGTCAGAAGAAAAGGAACAAGGGGCTTCGATAATGATAACTAGCACCATCATAATTGTTCTCTTCACAAACGTGGTGTTTGGATTGTTGACCAAGTCCATAGTAAGACGAATGATTCCTCGAATTAACCACGAGTCAAGACATTTATATTTTCCCTTACTTCAAGAATTGAGTGATTTGTTGCTTGATGAGAATGATATTGAATCCGACACCAACGAACTTAACCAACTTCCTCCCGACAGTTTCATGTCGTTTATGAAATCTCCAACTCAATGTCTCCATTATTATTGGTACAAGTTTGATGATTGCTTCATGCGTCCTGTTTTTGGAGGGAGTGAATCTTCATTGGAGCATCTCACTCCCTCAGCTTCTCCCTGA 1605 40.93 MDPMAFLSQLGLKADREAAHFTFFAVLLFVCYLIVRLFEKKRWLNESITSLAIGIFTGIIVLLTTRGKSSHILEFNEQLFFIYLLPPIIFNAGFQVKKKQFFRNFLAILLFGAFGSVISFFIISLGSLNLFKILDVGSVDTQDCFALGAILTATDSVCTLQVLKQDETPLLYSLVFGEGVVNDATSVVLFNAIKKFDLSHITSTNAIRLAGSFLGLFLGSTLLGIAVGLLCAFIIKKLSLGRHPTDYEVVPMILMAYLSYMIAELLLLSGILSVFFCGIVMSHYASWNNRTDSTNNGIGSSRLIPRHAFATLSFVAEIFIFLYVGMDALDIEKWNVVRERPGKSVGASLILLGLVLVGRAAFVFPLSFVSNLTRKHKKDHIGFKQQFTIWWAGLMRGAVSVALAYHQFARSEEKEQGASIMITSTIIIVLFTNVVFGLLTKSIVRRMIPRINHESRHLYFPLLQELSDLLLDENDIESDTNELNQLPPDSFMSFMKSPTQCLHYYWYKFDDCFMRPVFGGSESSLEHLTPSASP 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5397902 5403432 + CcPI632755_09g006110.1 Cco09g0611 187068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0611 534 PANTHER SODIUM/HYDROGEN EXCHANGER 20 525 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Cco09g0611 534 Gene3D - 139 192 - -
Cco09g0611 534 PRINTS Na+/H+ exchanger signature 93 107 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0611 534 PRINTS Na+/H+ exchanger signature 108 116 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0611 534 PRINTS Na+/H+ exchanger signature 79 90 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0611 534 PRINTS Na+/H+ exchanger signature 148 158 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0611 534 Pfam Sodium/hydrogen exchanger family 27 445 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0554 Cco-Chr6:5972658 Cco09g0611 Cco-Chr9:5397902 9.20E-161 dispersed
Cco09g0611 Cco-Chr9:5397902 Cco09g2294 Cco-Chr9:37171102 4.20E-134 dispersed
Cco09g0610 Cco-Chr9:5387198 Cco09g0611 Cco-Chr9:5397902 7.70E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0611 - - - 0.0