Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0698 ATGGATTTAACAAATGGGGGTGAGGCCGGCAACGCTCCAGTAGCTAAGAATTCGAGTCATCAAGTATCTGATATTGTTTCCGGAAAGTCGAGCAATACCCAAGAGAAGGATTTGGGTTCAAAATTGGGGACAGGAAGCAAAAGCAATAGGGATATGGTATTTCGTGCTGATAAGATTGATTTCAAGAGTTGGGATATTCAGCTGGAGAAGCACTTGAGCAGGGCTTGGTCAAGGGACAGGGAAGTGCCTGCTAAAAAGGAAGAATGGGAGATTGACTTGTCTAAACTTGATATCAGATATGTTAAAGCTCATGGAACTTATGGTACTATTTACAGAGGAAACTATGATGGCAATGATGTTGCAGTGAAAGTGCTTGATTGGGGGGAGGATGGTGTTTCCTCAGTTGCTGAAATTGCTGCTCTTCGAACATCTTTTCGCCAGGAAGTGGCTGTATGGCATAAGCTTGACCATCCCAATGTTGCAAAGTTTTATGGAGCATCAATGGGGACGTCCAACCTTAAAATACCTCCCAAGAGCTCATCATTCGACAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTATCTTCCAGGTGGAACACTAAAGAGCTTTTTAATCAAAAATAGGAAAAGGAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTGGATCTTTCTAGAGGTTTAAGTTATCTACACTCCAAAAAGATTGTACACCGTGATATTAAAACAGAGAATGTGCTGCTAGATGCTCAGAAGACTCTGAAAATTGTTGATTTTGGCGTTGCCCGGGTTGAAGCACAGAACCCAAGGGATATGACTGGAGAGACTGGCACCCTTGGTTACATGGCCCCAGAGGTCCTTGATGGTAAACCTTATAATCGGAAATGTGATGTCTACAGTTTTGGTATATGTTTGTGGGAAACGTATTGCTGCGATATGCCTTACCCAGATCTCAGTTTTGCTGAAGTGTCATCTGCAGTTGTGCGACAGAATTTACGACCGGATATCCCTAGATGCTGCCCGAGTTCGTTCGCAAATATCATGAAAAGATGTTGGGACGCAAATCCAGAAAGGCGACCCGACATGGACGAGGTCGTAAAATTGTTGGAAGCCATTGATACAAGTAAAGGGGGTGGCATGATTACTGAAGATCAGATTAGTTGTTTCTGTTTCCGCAAGCCTCGTGGTCCATAA 1209 43.26 MDLTNGGEAGNAPVAKNSSHQVSDIVSGKSSNTQEKDLGSKLGTGSKSNRDMVFRADKIDFKSWDIQLEKHLSRAWSRDREVPAKKEEWEIDLSKLDIRYVKAHGTYGTIYRGNYDGNDVAVKVLDWGEDGVSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFYGASMGTSNLKIPPKSSSFDSNQSFPSRACCVVVEYLPGGTLKSFLIKNRKRKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAQKTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVRQNLRPDIPRCCPSSFANIMKRCWDANPERRPDMDEVVKLLEAIDTSKGGGMITEDQISCFCFRKPRGP 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6247296 6250213 - CcPI632755_09g006980.1 Cco09g0698 187155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0698 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0698 402 CDD STKc_MAP3K-like 103 374 - -
Cco09g0698 402 MobiDBLite consensus disorder prediction 1 44 - -
Cco09g0698 402 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0698 402 SUPERFAMILY Protein kinase-like (PK-like) 78 374 IPR011009 -
Cco09g0698 402 PRINTS Tyrosine kinase catalytic domain signature 235 253 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0698 402 PRINTS Tyrosine kinase catalytic domain signature 197 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0698 402 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0698 402 PRINTS Tyrosine kinase catalytic domain signature 345 367 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0698 402 SMART serkin_6 96 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0698 402 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 45 375 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cco09g0698 402 Gene3D Transferase(Phosphotransferase) domain 1 200 391 - -
Cco09g0698 402 FunFam Serine/threonine-protein kinase HT1 200 385 - -
Cco09g0698 402 Gene3D Phosphorylase Kinase; domain 1 84 176 - -
Cco09g0698 402 FunFam Kinase suppressor of Ras 1 85 179 - -
Cco09g0698 402 Pfam Protein tyrosine and serine/threonine kinase 104 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0698 402 MobiDBLite consensus disorder prediction 11 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1895 Cco-Chr6:29138663 Cco09g0698 Cco-Chr9:6247296 2.30E-147 dispersed
Cco09g0698 Cco-Chr9:6247296 Cco10g1412 Cco-Chr10:27205296 5.50E-147 dispersed
Cco05g0580 Cco-Chr5:4749219 Cco09g0698 Cco-Chr9:6247296 1.10E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87090 PF07714 PK_Tyr_Ser-Thr 1.20E-57 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0698 - - - 0.0