Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0698 | ATGGATTTAACAAATGGGGGTGAGGCCGGCAACGCTCCAGTAGCTAAGAATTCGAGTCATCAAGTATCTGATATTGTTTCCGGAAAGTCGAGCAATACCCAAGAGAAGGATTTGGGTTCAAAATTGGGGACAGGAAGCAAAAGCAATAGGGATATGGTATTTCGTGCTGATAAGATTGATTTCAAGAGTTGGGATATTCAGCTGGAGAAGCACTTGAGCAGGGCTTGGTCAAGGGACAGGGAAGTGCCTGCTAAAAAGGAAGAATGGGAGATTGACTTGTCTAAACTTGATATCAGATATGTTAAAGCTCATGGAACTTATGGTACTATTTACAGAGGAAACTATGATGGCAATGATGTTGCAGTGAAAGTGCTTGATTGGGGGGAGGATGGTGTTTCCTCAGTTGCTGAAATTGCTGCTCTTCGAACATCTTTTCGCCAGGAAGTGGCTGTATGGCATAAGCTTGACCATCCCAATGTTGCAAAGTTTTATGGAGCATCAATGGGGACGTCCAACCTTAAAATACCTCCCAAGAGCTCATCATTCGACAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTATCTTCCAGGTGGAACACTAAAGAGCTTTTTAATCAAAAATAGGAAAAGGAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTGGATCTTTCTAGAGGTTTAAGTTATCTACACTCCAAAAAGATTGTACACCGTGATATTAAAACAGAGAATGTGCTGCTAGATGCTCAGAAGACTCTGAAAATTGTTGATTTTGGCGTTGCCCGGGTTGAAGCACAGAACCCAAGGGATATGACTGGAGAGACTGGCACCCTTGGTTACATGGCCCCAGAGGTCCTTGATGGTAAACCTTATAATCGGAAATGTGATGTCTACAGTTTTGGTATATGTTTGTGGGAAACGTATTGCTGCGATATGCCTTACCCAGATCTCAGTTTTGCTGAAGTGTCATCTGCAGTTGTGCGACAGAATTTACGACCGGATATCCCTAGATGCTGCCCGAGTTCGTTCGCAAATATCATGAAAAGATGTTGGGACGCAAATCCAGAAAGGCGACCCGACATGGACGAGGTCGTAAAATTGTTGGAAGCCATTGATACAAGTAAAGGGGGTGGCATGATTACTGAAGATCAGATTAGTTGTTTCTGTTTCCGCAAGCCTCGTGGTCCATAA | 1209 | 43.26 | MDLTNGGEAGNAPVAKNSSHQVSDIVSGKSSNTQEKDLGSKLGTGSKSNRDMVFRADKIDFKSWDIQLEKHLSRAWSRDREVPAKKEEWEIDLSKLDIRYVKAHGTYGTIYRGNYDGNDVAVKVLDWGEDGVSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFYGASMGTSNLKIPPKSSSFDSNQSFPSRACCVVVEYLPGGTLKSFLIKNRKRKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAQKTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVRQNLRPDIPRCCPSSFANIMKRCWDANPERRPDMDEVVKLLEAIDTSKGGGMITEDQISCFCFRKPRGP | 402 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6247296 | 6250213 | - | CcPI632755_09g006980.1 | Cco09g0698 | 187155 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0698 | 402 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 241 | 253 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g0698 | 402 | CDD | STKc_MAP3K-like | 103 | 374 | - | - | |
Cco09g0698 | 402 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cco09g0698 | 402 | ProSiteProfiles | Protein kinase domain profile. | 96 | 377 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0698 | 402 | SUPERFAMILY | Protein kinase-like (PK-like) | 78 | 374 | IPR011009 | - | |
Cco09g0698 | 402 | PRINTS | Tyrosine kinase catalytic domain signature | 235 | 253 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g0698 | 402 | PRINTS | Tyrosine kinase catalytic domain signature | 197 | 210 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g0698 | 402 | PRINTS | Tyrosine kinase catalytic domain signature | 301 | 323 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g0698 | 402 | PRINTS | Tyrosine kinase catalytic domain signature | 345 | 367 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g0698 | 402 | SMART | serkin_6 | 96 | 377 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0698 | 402 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 45 | 375 | IPR051681 | GO:0004674(PANTHER)|GO:0005886(PANTHER) | |
Cco09g0698 | 402 | Gene3D | Transferase(Phosphotransferase) domain 1 | 200 | 391 | - | - | |
Cco09g0698 | 402 | FunFam | Serine/threonine-protein kinase HT1 | 200 | 385 | - | - | |
Cco09g0698 | 402 | Gene3D | Phosphorylase Kinase; domain 1 | 84 | 176 | - | - | |
Cco09g0698 | 402 | FunFam | Kinase suppressor of Ras 1 | 85 | 179 | - | - | |
Cco09g0698 | 402 | Pfam | Protein tyrosine and serine/threonine kinase | 104 | 373 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g0698 | 402 | MobiDBLite | consensus disorder prediction | 11 | 44 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1895 | Cco-Chr6:29138663 | Cco09g0698 | Cco-Chr9:6247296 | 2.30E-147 | dispersed | |
Cco09g0698 | Cco-Chr9:6247296 | Cco10g1412 | Cco-Chr10:27205296 | 5.50E-147 | dispersed | |
Cco05g0580 | Cco-Chr5:4749219 | Cco09g0698 | Cco-Chr9:6247296 | 1.10E-157 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87090 | PF07714 | PK_Tyr_Ser-Thr | 1.20E-57 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0698 | - | - | - | 0.0 |