Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0702 ATGGGTAACGCCGATTACGTGTACCCATCATCCACGGCAGCAGGGGATGGCGGCGAGTGCATACACAGGGCGGCGATTCCGCCGGCGCAGCCGTTCGTGAAGTCGCTGAAGAACGGTCTGAAGGAGACGTTCTTCCCGGACGACCCGCTCCGGCAGTTCAAGAATCAGCCGGCGGGAAGGAAGATAATTCTGGGTTTGCAGTACTTTTTTCCGGTGGTGGAATGGGGGCCGCGCTATAATTTAGGGCTTCTGAAATCGGATCTTATCTCTGGAATCACCATTGCTAGCCTCGCCATTCCTCAGGGCATTAGCTACGCGAAGCTTGCTAACTTGCCTCCTATACTCGGCCTCTATTCGAGTTTTATTCCGCCGTTAATTTATGCAATGATGGGAAGCTCAAAGGACTTGGCCGTCGGAACAGTGGCAGTGGCGTCACTTCTGATTAGCTCAATGTTAGGAGCAGAGGTTAACCCTGTTCAAAACCCCACTCTTTATCTCCATCTTGCTTTCACCGCGACTTTCTTCGCCGGAGTCTTCCAAGCCTCCTTAGGGCTCTTAAGGCTAGGGTTCATTGTTGATTTCTTGTCACATGCAACCATTGTTGGGTTCATGGCGGGCGCTGCCACGGTGGTGTGCCTACAGCAACTCAAAGGCATCCTAGGGCTAACCCATTTCACCCACGCGACCGACCTCGTTTCCGTCCTCCGCTCCGTCTTCTCCCAAGTTCATCAGTGGAGATGGGAAAGTGGGGTCTTGGGATGCTGTTTTCTCTTCTTCCTCCTCATCACTAGATACTTTAGCAAGAAAAAGCCAAAGTTCTTCTGGATATCAGCAATGGCACCTTTGACCTCAGTGATTTTAGGAAGCCTTCTAGTGTTTCTTACTCACGCTGAAAAACACGGCGTCGAAGTGATTGGAGAATTGAAGAAAGGGCTAAATCCAGTGTCAATTACAAATTTGGTGTTTGTGTCACCTTATCTTTCAACTGCCATTAAAACTGGCATCATCACTGGCGTCATAGCTCTTGCGGAAGGAATAGCAGTTGGAAGAAGCTTTGCGATGTTCAAGCATTACAACATCGATGGCAACAAAGAAATGGTAGCCATTGGCACAATGAACATTGTCGGCTCTTGCTTCTCTTGCTATCTCACAACAGGGCCCTTTTCGCGATCGGCTGTGAATTACAATGCAGGATGCAAAACCGCGGTATCAAACGTGGTAATGGCGATTGCAGTGATGTTGACATTGTTATTCTTGACTCCTCTGTTCCACTACACTCCTCTGGTGGTGCTTTCTTCCATCATCATTTCCGCCATGCTTGGCCTCATTGATTACGAAGCTGCTATTCACTTATGGAAGGTTGATAAATTTGATTTCCTTGTCTGCATTGGCGCTTATGCTGGTGTTGTCTTTGCCAGTGTTGAAATTGGCTTGGTCATTGCGGTGGTGATATCTCTGCTTAGACTACTTTTGTTCATTGCGAGGCCGAGGACGCTTGTGCTTGGAAACCTTCCCAATTCCACAGTTTACAGGAACGTAGAGCAATACCCGAATGCCGATCATGTTCCTGGCATTCTCATACTTGAGATTGACGCTCCCATTTACTTTGCTAATTCCAGCTACTTGAGAGAAAGGATTATAAGGTGGGTTGATGAAGAGGAAGATAGGATAAAAGCTTCGGGTGAAAGTACCTTACAATATGTCGTATTGGACATGAGTGCTGTTGGCAACATTGATACAAGTGGAATAAGTATGTTTGAAGAGATGAAGAAGATTTTAGAAAGAAGGGGATTGAAGATAGTTTTGGCCAACCCTGGAGCTGAGGTAATGAAGAAGCTGGACAAGGGCAAGTTCATTGAGACCCTCGGACACGAATGGATCTATCTAACAGTTGCCGAAGCTGTAGCGGCCTGCAACTATATGCTTCACTCTTGCAAACCGAACCCTGTAACTGATGAGAAAGCTGAGCCATGGAACAATGTGGCAATCGCAATCGCAATCACCTTAATCTTCTTCTTCTTCTTCTTCTTCTTTCACATTAGTAGCGGCCTCTCCCCTCAAACGAACATCGGCCATTCGACGATTGATTCCTTGTTCAATCATAATGGTGCCTACAAAGAAATCGAAGAAGCGTAA 2136 47.19 MGNADYVYPSSTAAGDGGECIHRAAIPPAQPFVKSLKNGLKETFFPDDPLRQFKNQPAGRKIILGLQYFFPVVEWGPRYNLGLLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSKDLAVGTVAVASLLISSMLGAEVNPVQNPTLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHATIVGFMAGAATVVCLQQLKGILGLTHFTHATDLVSVLRSVFSQVHQWRWESGVLGCCFLFFLLITRYFSKKKPKFFWISAMAPLTSVILGSLLVFLTHAEKHGVEVIGELKKGLNPVSITNLVFVSPYLSTAIKTGIITGVIALAEGIAVGRSFAMFKHYNIDGNKEMVAIGTMNIVGSCFSCYLTTGPFSRSAVNYNAGCKTAVSNVVMAIAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYEAAIHLWKVDKFDFLVCIGAYAGVVFASVEIGLVIAVVISLLRLLLFIARPRTLVLGNLPNSTVYRNVEQYPNADHVPGILILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGESTLQYVVLDMSAVGNIDTSGISMFEEMKKILERRGLKIVLANPGAEVMKKLDKGKFIETLGHEWIYLTVAEAVAACNYMLHSCKPNPVTDEKAEPWNNVAIAIAITLIFFFFFFFFHISSGLSPQTNIGHSTIDSLFNHNGAYKEIEEA 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6307169 6316874 - CcPI632755_09g007020.1 Cco09g0702 187159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0702 711 SUPERFAMILY SpoIIaa-like 517 639 IPR036513 -
Cco09g0702 711 ProSitePatterns SLC26A transporters signature. 113 134 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cco09g0702 711 CDD STAS_SulP_like_sulfate_transporter 516 631 - -
Cco09g0702 711 ProSiteProfiles STAS domain profile. 515 638 IPR002645 -
Cco09g0702 711 FunFam Sulfate transporter 31 495 641 - -
Cco09g0702 711 PANTHER SULFATE TRANSPORTER 61 639 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0702 711 Pfam Sulfate permease family 84 464 IPR011547 GO:0016020(InterPro)
Cco09g0702 711 NCBIfam sulfate permease 71 634 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0702 711 Pfam STAS domain 516 634 IPR002645 -
Cco09g0702 711 Gene3D STAS domain 495 641 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1175 Cco-Chr6:20996208 Cco09g0702 Cco-Chr9:6307169 2.20E-201 dispersed
Cco06g1177 Cco-Chr6:21020202 Cco09g0702 Cco-Chr9:6307169 8.20E-201 dispersed
Cco09g0216 Cco-Chr9:1916017 Cco09g0702 Cco-Chr9:6307169 4.60E-215 dispersed
Cco09g0702 Cco-Chr9:6307169 Cco11g0144 Cco-Chr11:1496493 2.00E-208 dispersed
Cco05g0575 Cco-Chr5:4694061 Cco09g0702 Cco-Chr9:6307169 5.90E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0702 K17471 - csv:101222260 1243.02