Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0708 ATGTTTGCTTCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTACCACAAGAGTCCACCCTGATTTCACCTGCTTAAACCCTCTCCTTCCATCTTTTTCTGATGTTCACCACCCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCGGATGCGGAAGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACAAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAATTTGCAGTTGCATAGGAGAGGGCACAATTTACCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGCTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGCCATGGCTGCCGCCGCGGCCGCTGCCTCGGGTGCCACTGATATCAACATAAACTCGTCTTCAACCACCACCGCCAACCAGTCGCTCTTTCCTTATGGTAGTCACCATCAATTCTCGAACTCGACACTATCACTACCACCACCTCCACCTCTGTCTCAAACCCACATGTCTTTAAACCCTTGGGATCATCCCCAAAACCCTAACCCTAATCACACCCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATTCTTCCCATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATTCCTCCTCTGCCAACAACAACCCTTTTGGTCTAATTCAAGACCACCACCACCAAAAGGTGGGCTCATCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCAGTGCACCCGGGATCAAATGTTGCCACGTCAGCTCACCTATCAGCAACAGCCCTACTCCAAAAGGCAGCGACAGTTGGCGTTGGCGCTGCAAAATCCGGTCACCATCAACCCGAGTCAGTAGGCCACATGACTCACTTCAACATGCAAAACATCCCCGAGTTCGGTCCACCGAATCACATTGAATCACTGAGTCAACTTGATCCTGACTATGCCACGTGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGAGATGGGAACAGTGGCGTTGGTAGTGGTGGTGGTTCTGGCGGCAGTGGAGTGGTGCAAGTTAGCATGAGCGTTAAGGATATGCTAACGTACGCAAGTGGATTGGAGATGTTTAAGCCTCACAACAATAATAATAGTAGTAATAATAATTTTGGATATGCGGAGCCAGCTGCCAGTGAAACTTGGGGAGATTGTTGA 1530 46.41 MFASTMSNSTSLSEEASVSSTTRVHPDFTCLNPLLPSFSDVHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAAASGATDININSSSTTTANQSLFPYGSHHQFSNSTLSLPPPPPLSQTHMSLNPWDHPQNPNPNHTLQIIKPEDSNSHSSHSHNFHQIPNLPLSNSSSANNNPFGLIQDHHHQKVGSSSSSSMITSPFRNLHVSVHPGSNVATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMQNIPEFGPPNHIESLSQLDPDYATWQKTDRLTRDFLGLTGDGNSGVGSGGGSGGSGVVQVSMSVKDMLTYASGLEMFKPHNNNNSSNNNFGYAEPAASETWGDC 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6393795 6397043 + CcPI632755_09g007080.1 Cco09g0708 187165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0708 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Cco09g0708 509 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Cco09g0708 509 FunFam protein indeterminate-domain 12-like 57 125 - -
Cco09g0708 509 MobiDBLite consensus disorder prediction 255 347 - -
Cco09g0708 509 Gene3D Classic Zinc Finger 57 126 - -
Cco09g0708 509 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Cco09g0708 509 MobiDBLite consensus disorder prediction 486 509 - -
Cco09g0708 509 Gene3D Classic Zinc Finger 147 212 - -
Cco09g0708 509 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Cco09g0708 509 MobiDBLite consensus disorder prediction 272 347 - -
Cco09g0708 509 MobiDBLite consensus disorder prediction 41 62 - -
Cco09g0708 509 SMART c2h2final6 154 174 IPR013087 -
Cco09g0708 509 SMART c2h2final6 78 100 IPR013087 -
Cco09g0708 509 SMART c2h2final6 119 149 IPR013087 -
Cco09g0708 509 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Cco09g0708 509 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 449 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco09g0708 509 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Cco09g0708 509 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 218 - -
Cco09g0708 509 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1121 Cco-Chr2:16329908 Cco09g0708 Cco-Chr9:6393795 5.60E-89 dispersed
Cco05g2031 Cco-Chr5:29394611 Cco09g0708 Cco-Chr9:6393795 1.10E-84 dispersed
Cco07g1453 Cco-Chr7:28645814 Cco09g0708 Cco-Chr9:6393795 7.40E-30 dispersed
Cco09g0708 Cco-Chr9:6393795 Cco11g0091 Cco-Chr11:1018161 2.20E-84 dispersed
Cco09g0708 Cco-Chr9:6393795 Cco04g1699 Cco-Chr4:32146844 3.30E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59922 PF00096 zf-C2H2 0.0051 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0708 K25870 - csv:101208253 775.007