Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0708 | ATGTTTGCTTCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTACCACAAGAGTCCACCCTGATTTCACCTGCTTAAACCCTCTCCTTCCATCTTTTTCTGATGTTCACCACCCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCGGATGCGGAAGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACAAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAATTTGCAGTTGCATAGGAGAGGGCACAATTTACCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGCTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGCCATGGCTGCCGCCGCGGCCGCTGCCTCGGGTGCCACTGATATCAACATAAACTCGTCTTCAACCACCACCGCCAACCAGTCGCTCTTTCCTTATGGTAGTCACCATCAATTCTCGAACTCGACACTATCACTACCACCACCTCCACCTCTGTCTCAAACCCACATGTCTTTAAACCCTTGGGATCATCCCCAAAACCCTAACCCTAATCACACCCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATTCTTCCCATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATTCCTCCTCTGCCAACAACAACCCTTTTGGTCTAATTCAAGACCACCACCACCAAAAGGTGGGCTCATCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCAGTGCACCCGGGATCAAATGTTGCCACGTCAGCTCACCTATCAGCAACAGCCCTACTCCAAAAGGCAGCGACAGTTGGCGTTGGCGCTGCAAAATCCGGTCACCATCAACCCGAGTCAGTAGGCCACATGACTCACTTCAACATGCAAAACATCCCCGAGTTCGGTCCACCGAATCACATTGAATCACTGAGTCAACTTGATCCTGACTATGCCACGTGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGAGATGGGAACAGTGGCGTTGGTAGTGGTGGTGGTTCTGGCGGCAGTGGAGTGGTGCAAGTTAGCATGAGCGTTAAGGATATGCTAACGTACGCAAGTGGATTGGAGATGTTTAAGCCTCACAACAATAATAATAGTAGTAATAATAATTTTGGATATGCGGAGCCAGCTGCCAGTGAAACTTGGGGAGATTGTTGA | 1530 | 46.41 | MFASTMSNSTSLSEEASVSSTTRVHPDFTCLNPLLPSFSDVHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAAASGATDININSSSTTTANQSLFPYGSHHQFSNSTLSLPPPPPLSQTHMSLNPWDHPQNPNPNHTLQIIKPEDSNSHSSHSHNFHQIPNLPLSNSSSANNNPFGLIQDHHHQKVGSSSSSSMITSPFRNLHVSVHPGSNVATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMQNIPEFGPPNHIESLSQLDPDYATWQKTDRLTRDFLGLTGDGNSGVGSGGGSGGSGVVQVSMSVKDMLTYASGLEMFKPHNNNNSSNNNFGYAEPAASETWGDC | 509 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6393795 | 6397043 | + | CcPI632755_09g007080.1 | Cco09g0708 | 187165 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0708 | 509 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 100 | IPR013087 | - | |
Cco09g0708 | 509 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 153 | 177 | - | - | |
Cco09g0708 | 509 | FunFam | protein indeterminate-domain 12-like | 57 | 125 | - | - | |
Cco09g0708 | 509 | MobiDBLite | consensus disorder prediction | 255 | 347 | - | - | |
Cco09g0708 | 509 | Gene3D | Classic Zinc Finger | 57 | 126 | - | - | |
Cco09g0708 | 509 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 174 | IPR036236 | - | |
Cco09g0708 | 509 | MobiDBLite | consensus disorder prediction | 486 | 509 | - | - | |
Cco09g0708 | 509 | Gene3D | Classic Zinc Finger | 147 | 212 | - | - | |
Cco09g0708 | 509 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 115 | 149 | - | - | |
Cco09g0708 | 509 | MobiDBLite | consensus disorder prediction | 272 | 347 | - | - | |
Cco09g0708 | 509 | MobiDBLite | consensus disorder prediction | 41 | 62 | - | - | |
Cco09g0708 | 509 | SMART | c2h2final6 | 154 | 174 | IPR013087 | - | |
Cco09g0708 | 509 | SMART | c2h2final6 | 78 | 100 | IPR013087 | - | |
Cco09g0708 | 509 | SMART | c2h2final6 | 119 | 149 | IPR013087 | - | |
Cco09g0708 | 509 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 132 | 211 | - | - | |
Cco09g0708 | 509 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 43 | 449 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco09g0708 | 509 | Pfam | Zinc finger, C2H2 type | 78 | 100 | IPR013087 | - | |
Cco09g0708 | 509 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 180 | 218 | - | - | |
Cco09g0708 | 509 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1121 | Cco-Chr2:16329908 | Cco09g0708 | Cco-Chr9:6393795 | 5.60E-89 | dispersed | |
Cco05g2031 | Cco-Chr5:29394611 | Cco09g0708 | Cco-Chr9:6393795 | 1.10E-84 | dispersed | |
Cco07g1453 | Cco-Chr7:28645814 | Cco09g0708 | Cco-Chr9:6393795 | 7.40E-30 | dispersed | |
Cco09g0708 | Cco-Chr9:6393795 | Cco11g0091 | Cco-Chr11:1018161 | 2.20E-84 | dispersed | |
Cco09g0708 | Cco-Chr9:6393795 | Cco04g1699 | Cco-Chr4:32146844 | 3.30E-88 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59922 | PF00096 | zf-C2H2 | 0.0051 | CL0361 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0708 | K25870 | - | csv:101208253 | 775.007 |