Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g0712 | ATGAGCAAATGCGAATCTACTTACCATGAGACTTTACTTCTCAACATCAGCAAAGCTCGAAGGAGATGGAGATTTGCCTATGCAGCAATATATTCAATCCGGGCCATGCTTTCTGTTGCAGTGACAAAAAGAAATGGCCATTACAGTTTACTCAACTTTGAGAACTGGCAGGAAGATTGTTATGAGGAACAAATTATCTGCACCAAAGATGATCAGAAGAAGCTGATTGAAATCGTGAAGAACAAAGACAAAGAAGCTTATCATGAGCTTGGAGAAGGTGCAACAATTGCAGCTTCTCTTGGAACGAATCCGGAGAATGGAATCAAGGACAATAGTGATATCTTGAATGAACAACGTCAAATATTTGGTTCTAACACTTACCACAAGCGGCCTCGGAAGAGTTTCTTTCATTTTGTAGTGGAAGCTTTCAAGGACACCACCATCCTCATTTTACTTGTATGTGCGGCTCTGGCACTTGGGTTTGGAATAAAAGAACATGGAGTTCAAGAAGGATGGTATGAAGGAGGGAGCATATTTGTAGCTGTTGCTTTGGTAGTTGCTGTGTCAGCAATTAGTAACTTCAGACAGGAGGTTCAATTCGAGAAGTTGTCGAAAATAAGTAGCAACATCAAAGTGGAGGTACTAAGAGATGGAAGGCGCATACAAGTTTCCATATTCGATATTGTGGTTGGAGATGTCGTGGTTCTAAAGCTTGGGGACCAAATTCCAGCTGATGGATTGTTCTTGAGCGGCCATTCTTTGCAGGTGGATGAGTCAAGCATGACAGGAGAAAGCGATCATGTGGAACTCAATACAACAGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTGGTAGATGGCTATGGTCAGATGCTGGTGACATCAGTGGGAATGGACACAGCATGGGGTGAGATGATGAGCTCCATATCTCGGGATTCTGAGGAGCAAACACCATTGCAAGTTCGTCTTAACAAATTAACCACTTCTATAGGAAAGGTAGGCCTCTCAGTTGCTTTGCTGGTCCTTGTTGTCATGTTAGCACGCTATTTCACTGGAAACACAAAGGATGATTTTGGGAACACAGAGTACAAAGGTCGAAAAACGGACATAGATGATGTGCTCAATGCAGTTATCCGTATAGTTGCTGCTGCAGTCACCATAGTAGTGGTTGCAATCCCTGAAGGCTTACCATTGGCTGTGACACTAACACTTGCTTACTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGAAACTGTCGGCTTGTGAAACAATGGGATCGGCAACTGTGATTTGCACTGACAAAACAGGTACTTTGACATTAAACCAAATGAAAGTAACCAAATTCTGGCTTGGCCAAGAGTTCATTGAGGAAGAAAACTCTTCCAATACCATAGCAGAGGCTGTTCATGAGTTGATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCGATCTTCACGAGAATCCAAAACTGAAATCTCTGGTAGTCCAACTGAGAAAGCGATTCTATCTTGGGCGGTCACAGAATTCGGTATGGACATGGAGAAGTTGAAGAAGTCATATGCCATTCTTCATGTGGAAACCTTCAACTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAGAAAATTGGCTGATAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTCTCAATGTGTTCAAGTTACTTTGAAAGGAATGGGAAAACATATCACTTGGATATTGAGAACCGAAAAAAACTTGAGAACATTATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAAACAAATCTCAGAAGACGAGGAAAAAAATGGCATACCAAACGTCTCAAACTCGAAACAAGATGGCTATACATTAATGGGAATAGTTGGCATTAAAGATCCATGTAGGCCAGGGGTGAAGAAAGCCGTGGAAACATGTAAATCAGCTGGAGTTTCCATTAAAATGATAACAGGAGACAACATTTTCACAGCAAAAGCTATAGCCACAGAATGTGGAATACTAGATTTTGATCACAACACTGCAAGCAGAGGCGAAGTAATAGAAGGTTCCGAGTTCCGAAACTACTCGAGCGAAGAGAGACTGCGGAGAGTTGATCAAATCAAGGTGATGGCAAGATCCACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTGGTAGCAGTAACTGGAGACGGCACAAATGATGCACCGGCTCTCAAAGAAGCTGACATAGGACTTTCCATGGGCATTGAAGGCACTGAGGTTGCAAAAGAGAGTTCAGACATTGTTATCTTGGATGATAACTTCACCACAGTAGCCACAGTCTTGAGGTGGGGAAGATGTGTATATAACAATATCCAAAAATTCATCCAATTTCAATTGACGGTCAATGTCGCAGCTCTTACAATTAACTTTCTAGCAGCAGTATCAGCCGGAGAGGTTCCTTTAACAGCAGTCCAATTATTGTGGGTGAATCTCATAATGGATACATTGGGTGCTCTTGCACTTGCTACTGAGAGACCCAATGATGAATTAATGCACAAGCCTCCCGTGGGAAGAACTGAGCCCCTAATAACAAATATCATGTGGAGAAACCTATTAGCTCAAGCTCTATACCAAATAGCAATACTCTTAATTTTCCAGTTCCAAGGAAGCACCATCTTCAGAGTAAGTGCAGAGGTAAACGATACACTAATCTTCAACATTTTTGTCCTCTGCCAAATCTTTAATGAGTTCAACTCAAGAAAACTAGAGAAACGGAACGTCTTTGAAGGCATCCTAAAGAATCATTTATTTCTAGGGATCGTGGGAGTAACACTTGTTCTACAAGTTGTTATGGTAGAATTCTTAAAGAAATTTGCAAATACAGTGAATCTAAATGGTTGGCAGTGGGGACTTTGCATTGCAATTGCAGCAATTTCTTGGCCTATTGGTTGGATTGTCAAATTCTTGCCCGTTTCTGATAAGCCTTTCCTTAGCTACTTCAAATGGTTTTAA | 3039 | 41.63 | MSKCESTYHETLLLNISKARRRWRFAYAAIYSIRAMLSVAVTKRNGHYSLLNFENWQEDCYEEQIICTKDDQKKLIEIVKNKDKEAYHELGEGATIAASLGTNPENGIKDNSDILNEQRQIFGSNTYHKRPRKSFFHFVVEAFKDTTILILLVCAALALGFGIKEHGVQEGWYEGGSIFVAVALVVAVSAISNFRQEVQFEKLSKISSNIKVEVLRDGRRIQVSIFDIVVGDVVVLKLGDQIPADGLFLSGHSLQVDESSMTGESDHVELNTTENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRDSEEQTPLQVRLNKLTTSIGKVGLSVALLVLVVMLARYFTGNTKDDFGNTEYKGRKTDIDDVLNAVIRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMKVTKFWLGQEFIEEENSSNTIAEAVHELINQGVGLNTTGSVYRSSRESKTEISGSPTEKAILSWAVTEFGMDMEKLKKSYAILHVETFNSEKKRSGVLVRKLADNTIHQHWKGAAEMILSMCSSYFERNGKTYHLDIENRKKLENIIQGMAASSLRCIAFAYKQISEDEEKNGIPNVSNSKQDGYTLMGIVGIKDPCRPGVKKAVETCKSAGVSIKMITGDNIFTAKAIATECGILDFDHNTASRGEVIEGSEFRNYSSEERLRRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVATVLRWGRCVYNNIQKFIQFQLTVNVAALTINFLAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKPPVGRTEPLITNIMWRNLLAQALYQIAILLIFQFQGSTIFRVSAEVNDTLIFNIFVLCQIFNEFNSRKLEKRNVFEGILKNHLFLGIVGVTLVLQVVMVEFLKKFANTVNLNGWQWGLCIAIAAISWPIGWIVKFLPVSDKPFLSYFKWF | 1012 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 6483548 | 6487118 | - | CcPI632755_09g007120.1 | Cco09g0712 | 187169 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g0712 | 1012 | SUPERFAMILY | HAD-like | 432 | 848 | IPR036412 | - | |
| Cco09g0712 | 1012 | Gene3D | - | 431 | 788 | IPR023214 | - | |
| Cco09g0712 | 1012 | PRINTS | P-type cation-transporting ATPase superfamily signature | 657 | 667 | - | - | |
| Cco09g0712 | 1012 | PRINTS | P-type cation-transporting ATPase superfamily signature | 257 | 271 | - | - | |
| Cco09g0712 | 1012 | PRINTS | P-type cation-transporting ATPase superfamily signature | 767 | 779 | - | - | |
| Cco09g0712 | 1012 | PRINTS | P-type cation-transporting ATPase superfamily signature | 434 | 448 | - | - | |
| Cco09g0712 | 1012 | PRINTS | P-type cation-transporting ATPase superfamily signature | 635 | 646 | - | - | |
| Cco09g0712 | 1012 | PRINTS | P-type cation-transporting ATPase superfamily signature | 743 | 762 | - | - | |
| Cco09g0712 | 1012 | Pfam | E1-E2 ATPase | 210 | 412 | - | - | |
| Cco09g0712 | 1012 | Pfam | Cation transporting ATPase, C-terminus | 828 | 998 | IPR006068 | - | |
| Cco09g0712 | 1012 | CDD | P-type_ATPase_Ca_PMCA-like | 115 | 876 | - | - | |
| Cco09g0712 | 1012 | Gene3D | - | 141 | 997 | - | - | |
| Cco09g0712 | 1012 | FunFam | Calcium-transporting ATPase | 760 | 1002 | - | - | |
| Cco09g0712 | 1012 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 441 | 639 | IPR023299 | GO:0000166(InterPro) | |
| Cco09g0712 | 1012 | FunFam | Calcium-transporting ATPase | 187 | 310 | - | - | |
| Cco09g0712 | 1012 | Gene3D | - | 115 | 310 | - | - | |
| Cco09g0712 | 1012 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 57 | 1000 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Cco09g0712 | 1012 | Pfam | Cation transporter/ATPase, N-terminus | 94 | 157 | IPR004014 | - | |
| Cco09g0712 | 1012 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 94 | 1000 | IPR023298 | - | |
| Cco09g0712 | 1012 | NCBIfam | HAD-IC family P-type ATPase | 714 | 823 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco09g0712 | 1012 | NCBIfam | HAD-IC family P-type ATPase | 377 | 476 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco09g0712 | 1012 | PRINTS | H+-transporting ATPase (proton pump) signature | 743 | 759 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco09g0712 | 1012 | PRINTS | H+-transporting ATPase (proton pump) signature | 775 | 800 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco09g0712 | 1012 | PRINTS | H+-transporting ATPase (proton pump) signature | 589 | 607 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco09g0712 | 1012 | SFLD | p-type atpase | 416 | 796 | IPR044492 | - | |
| Cco09g0712 | 1012 | SUPERFAMILY | Calcium ATPase, transduction domain A | 210 | 308 | IPR008250 | - | |
| Cco09g0712 | 1012 | SMART | Cation_ATPase_N_a_2 | 86 | 163 | IPR004014 | - | |
| Cco09g0712 | 1012 | Gene3D | - | 444 | 642 | IPR023299 | GO:0000166(InterPro) | |
| Cco09g0712 | 1012 | Pfam | haloacid dehalogenase-like hydrolase | 432 | 757 | - | - | |
| Cco09g0712 | 1012 | SFLD | Haloacid Dehalogenase | 416 | 796 | - | - | |
| Cco09g0712 | 1012 | PANTHER | CATION TRANSPORTING ATPASE | 63 | 1001 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Cco09g0712 | 1012 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 436 | 442 | IPR018303 | - | |
| Cco09g0712 | 1012 | FunFam | Calcium-transporting ATPase | 636 | 788 | - | - | |
| Cco09g0712 | 1012 | FunFam | Calcium-transporting ATPase | 444 | 642 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco08g1842 | Cco-Chr8:29407488 | Cco09g0712 | Cco-Chr9:6483548 | 5.60E-86 | dispersed | |
| Cco09g0712 | Cco-Chr9:6483548 | Cco10g1561 | Cco-Chr10:28801858 | 1.10E-236 | dispersed | |
| Cco02g0295 | Cco-Chr2:2679359 | Cco09g0712 | Cco-Chr9:6483548 | 2.30E-105 | transposed | |
| Cco09g0155 | Cco-Chr9:1387175 | Cco09g0712 | Cco-Chr9:6483548 | 1.00E-283 | transposed | |
| Cco11g1185 | Cco-Chr11:23152968 | Cco09g0712 | Cco-Chr9:6483548 | 9.80E-292 | transposed | |
| Cco02g1779 | Cco-Chr2:30616701 | Cco09g0712 | Cco-Chr9:6483548 | 6.8e-310 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g0712 | K01537 | - | csv:101220140 | 1768.82 |