Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0712 ATGAGCAAATGCGAATCTACTTACCATGAGACTTTACTTCTCAACATCAGCAAAGCTCGAAGGAGATGGAGATTTGCCTATGCAGCAATATATTCAATCCGGGCCATGCTTTCTGTTGCAGTGACAAAAAGAAATGGCCATTACAGTTTACTCAACTTTGAGAACTGGCAGGAAGATTGTTATGAGGAACAAATTATCTGCACCAAAGATGATCAGAAGAAGCTGATTGAAATCGTGAAGAACAAAGACAAAGAAGCTTATCATGAGCTTGGAGAAGGTGCAACAATTGCAGCTTCTCTTGGAACGAATCCGGAGAATGGAATCAAGGACAATAGTGATATCTTGAATGAACAACGTCAAATATTTGGTTCTAACACTTACCACAAGCGGCCTCGGAAGAGTTTCTTTCATTTTGTAGTGGAAGCTTTCAAGGACACCACCATCCTCATTTTACTTGTATGTGCGGCTCTGGCACTTGGGTTTGGAATAAAAGAACATGGAGTTCAAGAAGGATGGTATGAAGGAGGGAGCATATTTGTAGCTGTTGCTTTGGTAGTTGCTGTGTCAGCAATTAGTAACTTCAGACAGGAGGTTCAATTCGAGAAGTTGTCGAAAATAAGTAGCAACATCAAAGTGGAGGTACTAAGAGATGGAAGGCGCATACAAGTTTCCATATTCGATATTGTGGTTGGAGATGTCGTGGTTCTAAAGCTTGGGGACCAAATTCCAGCTGATGGATTGTTCTTGAGCGGCCATTCTTTGCAGGTGGATGAGTCAAGCATGACAGGAGAAAGCGATCATGTGGAACTCAATACAACAGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTGGTAGATGGCTATGGTCAGATGCTGGTGACATCAGTGGGAATGGACACAGCATGGGGTGAGATGATGAGCTCCATATCTCGGGATTCTGAGGAGCAAACACCATTGCAAGTTCGTCTTAACAAATTAACCACTTCTATAGGAAAGGTAGGCCTCTCAGTTGCTTTGCTGGTCCTTGTTGTCATGTTAGCACGCTATTTCACTGGAAACACAAAGGATGATTTTGGGAACACAGAGTACAAAGGTCGAAAAACGGACATAGATGATGTGCTCAATGCAGTTATCCGTATAGTTGCTGCTGCAGTCACCATAGTAGTGGTTGCAATCCCTGAAGGCTTACCATTGGCTGTGACACTAACACTTGCTTACTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGAAACTGTCGGCTTGTGAAACAATGGGATCGGCAACTGTGATTTGCACTGACAAAACAGGTACTTTGACATTAAACCAAATGAAAGTAACCAAATTCTGGCTTGGCCAAGAGTTCATTGAGGAAGAAAACTCTTCCAATACCATAGCAGAGGCTGTTCATGAGTTGATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCGATCTTCACGAGAATCCAAAACTGAAATCTCTGGTAGTCCAACTGAGAAAGCGATTCTATCTTGGGCGGTCACAGAATTCGGTATGGACATGGAGAAGTTGAAGAAGTCATATGCCATTCTTCATGTGGAAACCTTCAACTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAGAAAATTGGCTGATAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTCTCAATGTGTTCAAGTTACTTTGAAAGGAATGGGAAAACATATCACTTGGATATTGAGAACCGAAAAAAACTTGAGAACATTATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAAACAAATCTCAGAAGACGAGGAAAAAAATGGCATACCAAACGTCTCAAACTCGAAACAAGATGGCTATACATTAATGGGAATAGTTGGCATTAAAGATCCATGTAGGCCAGGGGTGAAGAAAGCCGTGGAAACATGTAAATCAGCTGGAGTTTCCATTAAAATGATAACAGGAGACAACATTTTCACAGCAAAAGCTATAGCCACAGAATGTGGAATACTAGATTTTGATCACAACACTGCAAGCAGAGGCGAAGTAATAGAAGGTTCCGAGTTCCGAAACTACTCGAGCGAAGAGAGACTGCGGAGAGTTGATCAAATCAAGGTGATGGCAAGATCCACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTGGTAGCAGTAACTGGAGACGGCACAAATGATGCACCGGCTCTCAAAGAAGCTGACATAGGACTTTCCATGGGCATTGAAGGCACTGAGGTTGCAAAAGAGAGTTCAGACATTGTTATCTTGGATGATAACTTCACCACAGTAGCCACAGTCTTGAGGTGGGGAAGATGTGTATATAACAATATCCAAAAATTCATCCAATTTCAATTGACGGTCAATGTCGCAGCTCTTACAATTAACTTTCTAGCAGCAGTATCAGCCGGAGAGGTTCCTTTAACAGCAGTCCAATTATTGTGGGTGAATCTCATAATGGATACATTGGGTGCTCTTGCACTTGCTACTGAGAGACCCAATGATGAATTAATGCACAAGCCTCCCGTGGGAAGAACTGAGCCCCTAATAACAAATATCATGTGGAGAAACCTATTAGCTCAAGCTCTATACCAAATAGCAATACTCTTAATTTTCCAGTTCCAAGGAAGCACCATCTTCAGAGTAAGTGCAGAGGTAAACGATACACTAATCTTCAACATTTTTGTCCTCTGCCAAATCTTTAATGAGTTCAACTCAAGAAAACTAGAGAAACGGAACGTCTTTGAAGGCATCCTAAAGAATCATTTATTTCTAGGGATCGTGGGAGTAACACTTGTTCTACAAGTTGTTATGGTAGAATTCTTAAAGAAATTTGCAAATACAGTGAATCTAAATGGTTGGCAGTGGGGACTTTGCATTGCAATTGCAGCAATTTCTTGGCCTATTGGTTGGATTGTCAAATTCTTGCCCGTTTCTGATAAGCCTTTCCTTAGCTACTTCAAATGGTTTTAA 3039 41.63 MSKCESTYHETLLLNISKARRRWRFAYAAIYSIRAMLSVAVTKRNGHYSLLNFENWQEDCYEEQIICTKDDQKKLIEIVKNKDKEAYHELGEGATIAASLGTNPENGIKDNSDILNEQRQIFGSNTYHKRPRKSFFHFVVEAFKDTTILILLVCAALALGFGIKEHGVQEGWYEGGSIFVAVALVVAVSAISNFRQEVQFEKLSKISSNIKVEVLRDGRRIQVSIFDIVVGDVVVLKLGDQIPADGLFLSGHSLQVDESSMTGESDHVELNTTENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRDSEEQTPLQVRLNKLTTSIGKVGLSVALLVLVVMLARYFTGNTKDDFGNTEYKGRKTDIDDVLNAVIRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMKVTKFWLGQEFIEEENSSNTIAEAVHELINQGVGLNTTGSVYRSSRESKTEISGSPTEKAILSWAVTEFGMDMEKLKKSYAILHVETFNSEKKRSGVLVRKLADNTIHQHWKGAAEMILSMCSSYFERNGKTYHLDIENRKKLENIIQGMAASSLRCIAFAYKQISEDEEKNGIPNVSNSKQDGYTLMGIVGIKDPCRPGVKKAVETCKSAGVSIKMITGDNIFTAKAIATECGILDFDHNTASRGEVIEGSEFRNYSSEERLRRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVATVLRWGRCVYNNIQKFIQFQLTVNVAALTINFLAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKPPVGRTEPLITNIMWRNLLAQALYQIAILLIFQFQGSTIFRVSAEVNDTLIFNIFVLCQIFNEFNSRKLEKRNVFEGILKNHLFLGIVGVTLVLQVVMVEFLKKFANTVNLNGWQWGLCIAIAAISWPIGWIVKFLPVSDKPFLSYFKWF 1012
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 6483548 6487118 - CcPI632755_09g007120.1 Cco09g0712 187169
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0712 1012 SUPERFAMILY HAD-like 432 848 IPR036412 -
Cco09g0712 1012 Gene3D - 431 788 IPR023214 -
Cco09g0712 1012 PRINTS P-type cation-transporting ATPase superfamily signature 657 667 - -
Cco09g0712 1012 PRINTS P-type cation-transporting ATPase superfamily signature 257 271 - -
Cco09g0712 1012 PRINTS P-type cation-transporting ATPase superfamily signature 767 779 - -
Cco09g0712 1012 PRINTS P-type cation-transporting ATPase superfamily signature 434 448 - -
Cco09g0712 1012 PRINTS P-type cation-transporting ATPase superfamily signature 635 646 - -
Cco09g0712 1012 PRINTS P-type cation-transporting ATPase superfamily signature 743 762 - -
Cco09g0712 1012 Pfam E1-E2 ATPase 210 412 - -
Cco09g0712 1012 Pfam Cation transporting ATPase, C-terminus 828 998 IPR006068 -
Cco09g0712 1012 CDD P-type_ATPase_Ca_PMCA-like 115 876 - -
Cco09g0712 1012 Gene3D - 141 997 - -
Cco09g0712 1012 FunFam Calcium-transporting ATPase 760 1002 - -
Cco09g0712 1012 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 441 639 IPR023299 GO:0000166(InterPro)
Cco09g0712 1012 FunFam Calcium-transporting ATPase 187 310 - -
Cco09g0712 1012 Gene3D - 115 310 - -
Cco09g0712 1012 NCBIfam calcium-translocating P-type ATPase, PMCA-type 57 1000 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Cco09g0712 1012 Pfam Cation transporter/ATPase, N-terminus 94 157 IPR004014 -
Cco09g0712 1012 SUPERFAMILY Calcium ATPase, transmembrane domain M 94 1000 IPR023298 -
Cco09g0712 1012 NCBIfam HAD-IC family P-type ATPase 714 823 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g0712 1012 NCBIfam HAD-IC family P-type ATPase 377 476 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g0712 1012 PRINTS H+-transporting ATPase (proton pump) signature 743 759 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g0712 1012 PRINTS H+-transporting ATPase (proton pump) signature 775 800 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g0712 1012 PRINTS H+-transporting ATPase (proton pump) signature 589 607 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g0712 1012 SFLD p-type atpase 416 796 IPR044492 -
Cco09g0712 1012 SUPERFAMILY Calcium ATPase, transduction domain A 210 308 IPR008250 -
Cco09g0712 1012 SMART Cation_ATPase_N_a_2 86 163 IPR004014 -
Cco09g0712 1012 Gene3D - 444 642 IPR023299 GO:0000166(InterPro)
Cco09g0712 1012 Pfam haloacid dehalogenase-like hydrolase 432 757 - -
Cco09g0712 1012 SFLD Haloacid Dehalogenase 416 796 - -
Cco09g0712 1012 PANTHER CATION TRANSPORTING ATPASE 63 1001 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Cco09g0712 1012 ProSitePatterns E1-E2 ATPases phosphorylation site. 436 442 IPR018303 -
Cco09g0712 1012 FunFam Calcium-transporting ATPase 636 788 - -
Cco09g0712 1012 FunFam Calcium-transporting ATPase 444 642 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1842 Cco-Chr8:29407488 Cco09g0712 Cco-Chr9:6483548 5.60E-86 dispersed
Cco09g0712 Cco-Chr9:6483548 Cco10g1561 Cco-Chr10:28801858 1.10E-236 dispersed
Cco02g0295 Cco-Chr2:2679359 Cco09g0712 Cco-Chr9:6483548 2.30E-105 transposed
Cco09g0155 Cco-Chr9:1387175 Cco09g0712 Cco-Chr9:6483548 1.00E-283 transposed
Cco11g1185 Cco-Chr11:23152968 Cco09g0712 Cco-Chr9:6483548 9.80E-292 transposed
Cco02g1779 Cco-Chr2:30616701 Cco09g0712 Cco-Chr9:6483548 6.8e-310 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0712 K01537 - csv:101220140 1768.82