Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0721 ATGGCGAACAATCATTCCGATACTCCGGCTGATGATTTCCTCGAGCAGATTCTTGGGATTTCTCCTTTTGGTTCGTCGGACCAAGGGTTAGCTGGAACTGACGGCGGATTGGCCGGAGCTGCTGCTGCTGCTGCTGCGGCAGCGGCGGCGGCTCCGGGTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGTGGTGGTCATATCGCTACGATTGGGAGTGGTAGTGTCGGTGGAGCTGGGTTTCATGGCGGACCCCCTTTTCCTCTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCCTCTGGAAGTGGAAAGCGGTATTGTGGTGATGTTGTTGATGTTCGAGCTTCGTCTGTAAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTGTGGGTGCAGCCCCACATCCACCAGCAATGCGCCCTAGGGTACGTGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTCCTACGTCTCCAAGTGAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAACCAACCGGCATGGGAGAGGTGGTCGAACGATGGTACAGAGAGACAAGTTGCTAAACTCATGGAAGAAAATGTGGGAGCCGCAATGCAATTCCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCATTGGCTTCAGCGATTTATCACACGCAACCACCTGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAACCCTCCTCCATAG 948 52.11 MANNHSDTPADDFLEQILGISPFGSSDQGLAGTDGGLAGAAAAAAAAAAAAPGQAPMMLQLSSGDGGGHIATIGSGSVGGAGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGDVVDVRASSVKNVFQGQQMHATVGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWERWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6541372 6544433 + CcPI632755_09g007210.1 Cco09g0721 187178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0721 315 MobiDBLite consensus disorder prediction 141 163 - -
Cco09g0721 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983(InterPro)
Cco09g0721 315 SMART finulus 165 214 IPR011598 GO:0046983(InterPro)
Cco09g0721 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 218 IPR036638 GO:0046983(InterPro)
Cco09g0721 315 Gene3D - 154 216 IPR036638 GO:0046983(InterPro)
Cco09g0721 315 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 100 294 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco09g0721 315 FunFam Basic helix-loop-helix transcription factor 154 216 - -
Cco09g0721 315 Pfam Helix-loop-helix DNA-binding domain 164 209 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1698 Cco-Chr3:31721835 Cco09g0721 Cco-Chr9:6541372 2.90E-74 dispersed
Cco06g1413 Cco-Chr6:24602535 Cco09g0721 Cco-Chr9:6541372 1.20E-46 dispersed
Cco07g0020 Cco-Chr7:234920 Cco09g0721 Cco-Chr9:6541372 3.90E-17 dispersed
Cco09g0721 Cco-Chr9:6541372 Cco09g0834 Cco-Chr9:7790126 6.70E-15 dispersed
Cco09g0721 Cco-Chr9:6541372 Cco02g1832 Cco-Chr2:31226410 8.20E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59924 PF00010 HLH 1.20E-07 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0721 - - - 0.0