Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0721 | ATGGCGAACAATCATTCCGATACTCCGGCTGATGATTTCCTCGAGCAGATTCTTGGGATTTCTCCTTTTGGTTCGTCGGACCAAGGGTTAGCTGGAACTGACGGCGGATTGGCCGGAGCTGCTGCTGCTGCTGCTGCGGCAGCGGCGGCGGCTCCGGGTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGTGGTGGTCATATCGCTACGATTGGGAGTGGTAGTGTCGGTGGAGCTGGGTTTCATGGCGGACCCCCTTTTCCTCTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCCTCTGGAAGTGGAAAGCGGTATTGTGGTGATGTTGTTGATGTTCGAGCTTCGTCTGTAAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTGTGGGTGCAGCCCCACATCCACCAGCAATGCGCCCTAGGGTACGTGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTCCTACGTCTCCAAGTGAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAACCAACCGGCATGGGAGAGGTGGTCGAACGATGGTACAGAGAGACAAGTTGCTAAACTCATGGAAGAAAATGTGGGAGCCGCAATGCAATTCCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCATTGGCTTCAGCGATTTATCACACGCAACCACCTGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAACCCTCCTCCATAG | 948 | 52.11 | MANNHSDTPADDFLEQILGISPFGSSDQGLAGTDGGLAGAAAAAAAAAAAAPGQAPMMLQLSSGDGGGHIATIGSGSVGGAGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGDVVDVRASSVKNVFQGQQMHATVGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWERWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6541372 | 6544433 | + | CcPI632755_09g007210.1 | Cco09g0721 | 187178 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0721 | 315 | MobiDBLite | consensus disorder prediction | 141 | 163 | - | - | |
Cco09g0721 | 315 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 159 | 208 | IPR011598 | GO:0046983(InterPro) | |
Cco09g0721 | 315 | SMART | finulus | 165 | 214 | IPR011598 | GO:0046983(InterPro) | |
Cco09g0721 | 315 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 157 | 218 | IPR036638 | GO:0046983(InterPro) | |
Cco09g0721 | 315 | Gene3D | - | 154 | 216 | IPR036638 | GO:0046983(InterPro) | |
Cco09g0721 | 315 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 100 | 294 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cco09g0721 | 315 | FunFam | Basic helix-loop-helix transcription factor | 154 | 216 | - | - | |
Cco09g0721 | 315 | Pfam | Helix-loop-helix DNA-binding domain | 164 | 209 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1698 | Cco-Chr3:31721835 | Cco09g0721 | Cco-Chr9:6541372 | 2.90E-74 | dispersed | |
Cco06g1413 | Cco-Chr6:24602535 | Cco09g0721 | Cco-Chr9:6541372 | 1.20E-46 | dispersed | |
Cco07g0020 | Cco-Chr7:234920 | Cco09g0721 | Cco-Chr9:6541372 | 3.90E-17 | dispersed | |
Cco09g0721 | Cco-Chr9:6541372 | Cco09g0834 | Cco-Chr9:7790126 | 6.70E-15 | dispersed | |
Cco09g0721 | Cco-Chr9:6541372 | Cco02g1832 | Cco-Chr2:31226410 | 8.20E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59924 | PF00010 | HLH | 1.20E-07 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0721 | - | - | - | 0.0 |