Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0732 ATGATGGAAGAGGTTGAAGAAGCTAATAGGGAAGCTGTTGAGAGTTGTCATAAAGTGTTGAATCTCTTGACTGTGGCTTCCTCGTCTCAAGATCAGTTGAAGCTTAGGAGTCGTTTAATGGCGGAAACTGGAGACGCTGTGTTTAAGTTTAGGAAAGTTCTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGGTCAAGAACTTTTTGTTTAATTCCTCTTCTTCCCCTTTTCCTCTTCCCCAATCTTTGTTCTTAGAAACTTCTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGCAGGAATTTGCAGATGGGTTCTCTTTGTTTGGGGAACCCATCTTTGGAATTGAACTCTAATGCCAAAAGTTGTTCAACCCAACAAATACAATCTCAATCTGCTGCTCTTTATCATCATCATCATCATCATCATCATCACTTGCTTCAGAACAGGGTGTTGTTGAACAATAATCCTAATCCTAATCCTAATCCTCCACAGCCTGAAATGATGTATCTTCGGAGCAATAATGGCATTAACTTAAATTTTGATAGCTCTAGTTGCACACAACACGCAATGTCATCCACTAGGTCGTTTATATCTTCCTTGAGCATTGATGGGAGTGTGGCTAGCTTGGATGGGAGTGCCTTTCATTTGATCGGGGCACCCCGGTCTTCCGATCAGAATTCGCATCATAAGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAGTGGGAGATGTCACTGCTCAAAAAAGAGGAAACATAGAGTAAAGCGATCAATTAAGGTGCCCGCGATAAGTAACAAGCTTGCAGATATACCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCACCTCACCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGCTGTCCAGCGAGGAAGCACGTCGAGCGGTGTCTCGAGGAACCTTCCATGCTCATTGTTACATATGAAGGCAACTACCCAAAACGGATTCGAAAAGCTCCGTGCAATGTAGCGGAACGGCGACAAGCGTGCCAAATGTTGCTGTACATATGGAATACTTTTGGAGCAGCTTTGTAG 1122 44.03 MMEEVEEANREAVESCHKVLNLLTVASSSQDQLKLRSRLMAETGDAVFKFRKVLCLLDSSGLGHARVRKKKVKNFLFNSSSSPFPLPQSLFLETSSPNCRMDLLQGRNLQMGSLCLGNPSLELNSNAKSCSTQQIQSQSAALYHHHHHHHHHLLQNRVLLNNNPNPNPNPPQPEMMYLRSNNGINLNFDSSSCTQHAMSSTRSFISSLSIDGSVASLDGSAFHLIGAPRSSDQNSHHKRKCSGRGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGNYPKRIRKAPCNVAERRQACQMLLYIWNTFGAAL 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6682005 6683840 - CcPI632755_09g007320.1 Cco09g0732 187189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0732 373 ProSiteProfiles WRKY domain profile. 280 346 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0732 373 MobiDBLite consensus disorder prediction 227 251 - -
Cco09g0732 373 Gene3D WRKY domain 264 338 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0732 373 MobiDBLite consensus disorder prediction 232 246 - -
Cco09g0732 373 SMART WRKY_cls 285 342 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0732 373 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 340 IPR044810 GO:0003700(InterPro)
Cco09g0732 373 Pfam Plant zinc cluster domain 238 283 IPR018872 -
Cco09g0732 373 SUPERFAMILY WRKY DNA-binding domain 283 341 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0732 373 FunFam WRKY transcription factor 65 269 345 - -
Cco09g0732 373 Pfam WRKY DNA -binding domain 287 340 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0732 Cco-Chr9:6682005 Cco10g1135 Cco-Chr10:23779848 2.40E-19 dispersed
Cco07g0068 Cco-Chr7:661271 Cco09g0732 Cco-Chr9:6682005 1.80E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59927 PF03106 WRKY 1.30E-22 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0732 - - - 0.0