Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0732 | ATGATGGAAGAGGTTGAAGAAGCTAATAGGGAAGCTGTTGAGAGTTGTCATAAAGTGTTGAATCTCTTGACTGTGGCTTCCTCGTCTCAAGATCAGTTGAAGCTTAGGAGTCGTTTAATGGCGGAAACTGGAGACGCTGTGTTTAAGTTTAGGAAAGTTCTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGGTCAAGAACTTTTTGTTTAATTCCTCTTCTTCCCCTTTTCCTCTTCCCCAATCTTTGTTCTTAGAAACTTCTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGCAGGAATTTGCAGATGGGTTCTCTTTGTTTGGGGAACCCATCTTTGGAATTGAACTCTAATGCCAAAAGTTGTTCAACCCAACAAATACAATCTCAATCTGCTGCTCTTTATCATCATCATCATCATCATCATCATCACTTGCTTCAGAACAGGGTGTTGTTGAACAATAATCCTAATCCTAATCCTAATCCTCCACAGCCTGAAATGATGTATCTTCGGAGCAATAATGGCATTAACTTAAATTTTGATAGCTCTAGTTGCACACAACACGCAATGTCATCCACTAGGTCGTTTATATCTTCCTTGAGCATTGATGGGAGTGTGGCTAGCTTGGATGGGAGTGCCTTTCATTTGATCGGGGCACCCCGGTCTTCCGATCAGAATTCGCATCATAAGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAGTGGGAGATGTCACTGCTCAAAAAAGAGGAAACATAGAGTAAAGCGATCAATTAAGGTGCCCGCGATAAGTAACAAGCTTGCAGATATACCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCACCTCACCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGCTGTCCAGCGAGGAAGCACGTCGAGCGGTGTCTCGAGGAACCTTCCATGCTCATTGTTACATATGAAGGCAACTACCCAAAACGGATTCGAAAAGCTCCGTGCAATGTAGCGGAACGGCGACAAGCGTGCCAAATGTTGCTGTACATATGGAATACTTTTGGAGCAGCTTTGTAG | 1122 | 44.03 | MMEEVEEANREAVESCHKVLNLLTVASSSQDQLKLRSRLMAETGDAVFKFRKVLCLLDSSGLGHARVRKKKVKNFLFNSSSSPFPLPQSLFLETSSPNCRMDLLQGRNLQMGSLCLGNPSLELNSNAKSCSTQQIQSQSAALYHHHHHHHHHLLQNRVLLNNNPNPNPNPPQPEMMYLRSNNGINLNFDSSSCTQHAMSSTRSFISSLSIDGSVASLDGSAFHLIGAPRSSDQNSHHKRKCSGRGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGNYPKRIRKAPCNVAERRQACQMLLYIWNTFGAAL | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6682005 | 6683840 | - | CcPI632755_09g007320.1 | Cco09g0732 | 187189 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0732 | 373 | ProSiteProfiles | WRKY domain profile. | 280 | 346 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0732 | 373 | MobiDBLite | consensus disorder prediction | 227 | 251 | - | - | |
Cco09g0732 | 373 | Gene3D | WRKY domain | 264 | 338 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0732 | 373 | MobiDBLite | consensus disorder prediction | 232 | 246 | - | - | |
Cco09g0732 | 373 | SMART | WRKY_cls | 285 | 342 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0732 | 373 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 2 | 340 | IPR044810 | GO:0003700(InterPro) | |
Cco09g0732 | 373 | Pfam | Plant zinc cluster domain | 238 | 283 | IPR018872 | - | |
Cco09g0732 | 373 | SUPERFAMILY | WRKY DNA-binding domain | 283 | 341 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0732 | 373 | FunFam | WRKY transcription factor 65 | 269 | 345 | - | - | |
Cco09g0732 | 373 | Pfam | WRKY DNA -binding domain | 287 | 340 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g0732 | Cco-Chr9:6682005 | Cco10g1135 | Cco-Chr10:23779848 | 2.40E-19 | dispersed | |
Cco07g0068 | Cco-Chr7:661271 | Cco09g0732 | Cco-Chr9:6682005 | 1.80E-95 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59927 | PF03106 | WRKY | 1.30E-22 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0732 | - | - | - | 0.0 |