Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0733 | ATGTCAATTGTTAATGATTTGTTTGGTAATTACCAAGAAGATTTCTTGTGGAACAATAGTCAGGATGAAAGTTTAATTTCCGGGGAAGAGAATTATTTCAGTTACTTGAAAGAGGTGTTGTTTGATGATATTTTTGAGGAGGCGGCCGGAGGAACGACGTCGTCTGATTCGAGTTCTTGTTCGTCTCCAGTGATGCAAGTTAAGGAGGAGATTGAGGAAGGGAGTTTTGGTGACGACATCGTTGTGCAGGAAGATGAATCACGTAAGGAGGATAGGGTTTATCGAGGGGTGCGGAGGAGGCCGTGGGGGAAGTACGCAGCCGAGATTAGGGATTCAACGCGACAAGGGGTGAGGGTGTGGTTGGGGACGTTTGATAGCGCCGAAGCGGCTGCGTTGGCGTATGACCAAGCGGCATTTTGCATGAGAGGAGGGTTAGCCACGCTTAACTTTCCGGTCGAGGTTGTACGAGAGTCACTCCGAGAGATGAAGTACAGGTGGGAGGCCGGGTGCTCGCCGGTCTTGGCGCTTAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCTGAGGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAGAAGCAAACTGTAGTTGTCTTTGAGGATTTGGGTGTAGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA | 675 | 48.44 | MSIVNDLFGNYQEDFLWNNSQDESLISGEENYFSYLKEVLFDDIFEEAAGGTTSSDSSSCSSPVMQVKEEIEEGSFGDDIVVQEDESRKEDRVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPVEVVRESLREMKYRWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKKQTVVVFEDLGVEYLEELLSLTS | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6707222 | 6707896 | - | CcPI632755_09g007330.1 | Cco09g0733 | 187190 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0733 | 224 | PANTHER | DNA-BINDING DOMAIN | 62 | 194 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Cco09g0733 | 224 | Gene3D | AP2/ERF domain | 93 | 154 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0733 | 224 | FunFam | Ethylene-responsive transcription factor 2 | 92 | 153 | - | - | |
Cco09g0733 | 224 | SUPERFAMILY | DNA-binding domain | 93 | 153 | IPR016177 | GO:0003677(InterPro) | |
Cco09g0733 | 224 | PRINTS | Ethylene responsive element binding protein signature | 94 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0733 | 224 | PRINTS | Ethylene responsive element binding protein signature | 117 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0733 | 224 | Coils | Coil | 183 | 203 | - | - | |
Cco09g0733 | 224 | ProSiteProfiles | AP2/ERF domain profile. | 93 | 151 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0733 | 224 | SMART | rav1_2 | 93 | 157 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0733 | 224 | Pfam | AP2 domain | 93 | 143 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0733 | 224 | CDD | AP2 | 94 | 152 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0101 | Cco-Chr7:1034172 | Cco09g0733 | Cco-Chr9:6707222 | 2.00E-42 | dispersed | |
Cco09g0733 | Cco-Chr9:6707222 | Cco09g0735 | Cco-Chr9:6728226 | 2.40E-22 | dispersed | |
Cco09g0733 | Cco-Chr9:6707222 | Cco09g0734 | Cco-Chr9:6719553 | 1.30E-20 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59928 | PF00847 | AP2 | 4.30E-15 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0733 | K14516 | - | csv:101205053 | 314.694 |