Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0733 ATGTCAATTGTTAATGATTTGTTTGGTAATTACCAAGAAGATTTCTTGTGGAACAATAGTCAGGATGAAAGTTTAATTTCCGGGGAAGAGAATTATTTCAGTTACTTGAAAGAGGTGTTGTTTGATGATATTTTTGAGGAGGCGGCCGGAGGAACGACGTCGTCTGATTCGAGTTCTTGTTCGTCTCCAGTGATGCAAGTTAAGGAGGAGATTGAGGAAGGGAGTTTTGGTGACGACATCGTTGTGCAGGAAGATGAATCACGTAAGGAGGATAGGGTTTATCGAGGGGTGCGGAGGAGGCCGTGGGGGAAGTACGCAGCCGAGATTAGGGATTCAACGCGACAAGGGGTGAGGGTGTGGTTGGGGACGTTTGATAGCGCCGAAGCGGCTGCGTTGGCGTATGACCAAGCGGCATTTTGCATGAGAGGAGGGTTAGCCACGCTTAACTTTCCGGTCGAGGTTGTACGAGAGTCACTCCGAGAGATGAAGTACAGGTGGGAGGCCGGGTGCTCGCCGGTCTTGGCGCTTAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCTGAGGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAGAAGCAAACTGTAGTTGTCTTTGAGGATTTGGGTGTAGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA 675 48.44 MSIVNDLFGNYQEDFLWNNSQDESLISGEENYFSYLKEVLFDDIFEEAAGGTTSSDSSSCSSPVMQVKEEIEEGSFGDDIVVQEDESRKEDRVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPVEVVRESLREMKYRWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKKQTVVVFEDLGVEYLEELLSLTS 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6707222 6707896 - CcPI632755_09g007330.1 Cco09g0733 187190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0733 224 PANTHER DNA-BINDING DOMAIN 62 194 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cco09g0733 224 Gene3D AP2/ERF domain 93 154 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0733 224 FunFam Ethylene-responsive transcription factor 2 92 153 - -
Cco09g0733 224 SUPERFAMILY DNA-binding domain 93 153 IPR016177 GO:0003677(InterPro)
Cco09g0733 224 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0733 224 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0733 224 Coils Coil 183 203 - -
Cco09g0733 224 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0733 224 SMART rav1_2 93 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0733 224 Pfam AP2 domain 93 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0733 224 CDD AP2 94 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0101 Cco-Chr7:1034172 Cco09g0733 Cco-Chr9:6707222 2.00E-42 dispersed
Cco09g0733 Cco-Chr9:6707222 Cco09g0735 Cco-Chr9:6728226 2.40E-22 dispersed
Cco09g0733 Cco-Chr9:6707222 Cco09g0734 Cco-Chr9:6719553 1.30E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59928 PF00847 AP2 4.30E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0733 K14516 - csv:101205053 314.694