Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0775 ATGGATTCGGCGAGGAGTTGGTTTAATAAGCTTCAGCCAAGAGATAGGTTGAGGGGTTCTACGAAGAAGAAGGATAATAGTATGGGAGAGAATGAGGATGGTACTGCTACTGATCAAACGGATGAAGAAGCGCTTTCTAATATTACTAAGCAGAAGGTTGCTGCGGCAAAGCAGTATATTGAGAATCATTACAAGGAGCAAATGAAGAATCTCCAGGAGAGAAAGGAAAGACGAAATATATTGGAAAAGAAGTTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAGTTCTTAGAGAAGAAGGAAACTGAATACATGCGCCTCCAAAGGCACAAAATGGGTGTTGATGATTTCGATTTACTAACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAACTGTATTGTGAAACTCTATTGTTCTTTTCAAGATGATGAGTTTCTTTATCTTATTATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGAAGATGAAGCAAGGTTTTACGTTGGAGAGATAGTTTTGGCTATTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGACTATGCAAACCGTTAGATTGCAGTACACTCCAAGAACAAGATTTTGATGTAGGTAGTGTCCGTAATGGAGCTGGACAAAGTGATGAGCGCAATGCAACTCCCCGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGAAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTATGGCATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCGACATGTCGGAAGATTGTGAACTGGAGAACTCATTTGAAGTTCCCTGACGAGGCAAAGCTGTCTCCCTTGGCAAAAGATCTCATCAGCAGACTACTATGCAATGTTAGCCAGAGGCTTGGTACAAATGGCGCAGATGAAATTAAGGTTCATCCGTGGTTTGAAGGTACTGAATGGGATAGGCTATACCAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTCGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTACTTCATCTAAAACTGGTCCATGGAGAAAGATGCTTTCATCGAAGGACATCAACTTTGTTGGATATACTTACAAGAACTTCGAAATTGTCAACGATTATCAATTGCCTGGGATGGCTGAATTGAAGAAAAAATGCAGCAAACCCAAAAGACCGTCAATCAAGTCACTCTTTGATGGCGAGTCGGAGGCAGCAGACACGTCTGATACACACACACCTACTCATAGTCAGCAGAACACTGAAGGTAGCTTTTCAAACTCGACATCTCCTAAACTGGATGAAGTTGAAATGGGGAAAGAGTCGATGTTCAATCTAGGATGGTGCATTCTGCATCAAAATTCTTTGACCGACTTCGGTTTAACAGAAAATGAAATTCGAGCAATGATGAAGAAGGTGGATTTTTGGTTTCTAACAACCGTCCTTGGATCCCAGCCTTCGTCCATGGTAGCGTTGTTTCCAGTCAGGTGA 1842 41.1 MDSARSWFNKLQPRDRLRGSTKKKDNSMGENEDGTATDQTDEEALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEQDFDVGSVRNGAGQSDERNATPRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSPLAKDLISRLLCNVSQRLGTNGADEIKVHPWFEGTEWDRLYQMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKTGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKCSKPKRPSIKSLFDGESEAADTSDTHTPTHSQQNTEGSFSNSTSPKLDEVEMGKESMFNLGWCILHQNSLTDFGLTENEIRAMMKKVDFWFLTTVLGSQPSSMVALFPVR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7115546 7124417 + CcPI632755_09g007750.1 Cco09g0775 187232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0775 613 FunFam Non-specific serine/threonine protein kinase 93 205 - -
Cco09g0775 613 Gene3D Transferase(Phosphotransferase) domain 1 206 438 - -
Cco09g0775 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0775 613 Gene3D Phosphorylase Kinase; domain 1 120 449 - -
Cco09g0775 613 ProSiteProfiles Protein kinase domain profile. 122 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0775 613 MobiDBLite consensus disorder prediction 289 303 - -
Cco09g0775 613 SUPERFAMILY Protein kinase-like (PK-like) 95 473 IPR011009 -
Cco09g0775 613 CDD MobB_NDR_LATS-like 56 117 - -
Cco09g0775 613 FunFam Non-specific serine/threonine protein kinase 206 273 - -
Cco09g0775 613 Pfam Protein kinase C terminal domain 439 483 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0775 613 Coils Coil 64 84 - -
Cco09g0775 613 FunFam Non-specific serine/threonine protein kinase 319 438 - -
Cco09g0775 613 SMART pkinase_C_6 421 485 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0775 613 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 488 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cco09g0775 613 CDD STKc_NDR_like 120 484 - -
Cco09g0775 613 MobiDBLite consensus disorder prediction 517 549 - -
Cco09g0775 613 ProSiteProfiles AGC-kinase C-terminal domain profile. 421 493 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0775 613 MobiDBLite consensus disorder prediction 1 45 - -
Cco09g0775 613 Pfam Protein kinase domain 124 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0775 613 Pfam Protein kinase domain 317 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0775 613 MobiDBLite consensus disorder prediction 527 549 - -
Cco09g0775 613 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524(InterPro)
Cco09g0775 613 MobiDBLite consensus disorder prediction 283 303 - -
Cco09g0775 613 MobiDBLite consensus disorder prediction 9 31 - -
Cco09g0775 613 SMART serkin_6 122 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0736 Cco-Chr6:8388269 Cco09g0775 Cco-Chr9:7115546 3.70E-243 dispersed
Cco08g1780 Cco-Chr8:28918367 Cco09g0775 Cco-Chr9:7115546 5.90E-173 dispersed
Cco09g0775 Cco-Chr9:7115546 Cco10g1370 Cco-Chr10:26715631 5.80E-39 dispersed
Cco09g0775 Cco-Chr9:7115546 Cco03g1590 Cco-Chr3:30519130 1.10E-183 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87093 PF00069 Pkinase 1.60E-63 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0775 K08790 - csv:101221720 1060.44