Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0780 ATGGCAGCCTCTTCTTCTTCTCCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGCGCCTCCCAGTTCTCTGCCATCCACAAAGTTTTCGGTGCAAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCAGTGACGATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCTTACGAAAAATCTTCGTTTTATTCCGACGACCCATTACTAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCGCCGGAGTTTGAACCTGCAGCTGTGCCGTACTTTGAGATGAGCGTCTTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA 555 48.47 MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFEPAAVPYFEMSVFDSNLAGDFCC 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7184727 7185492 - CcPI632755_09g007800.1 Cco09g0780 187237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0780 184 Coils Coil 92 112 - -
Cco09g0780 184 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 125 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cco09g0780 184 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Cco09g0780 184 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0094 Cco-Chr7:951063 Cco09g0780 Cco-Chr9:7184727 1.50E-38 dispersed
Cco07g0095 Cco-Chr7:960824 Cco09g0780 Cco-Chr9:7184727 1.50E-43 dispersed
Cco07g0347 Cco-Chr7:3663341 Cco09g0780 Cco-Chr9:7184727 1.90E-32 dispersed
Cco09g0780 Cco-Chr9:7184727 Cco10g1573 Cco-Chr10:28943397 2.60E-35 dispersed
Cco09g0780 Cco-Chr9:7184727 Cco06g0035 Cco-Chr6:348355 5.10E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59934 PF03195 LOB 1.20E-34 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0780 K13945 - csv:101220863 322.013