Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g0782 | ATGGCGGAACTGGAGAATTCAAGATTACTACCGCCACAAACCATGCAACACGAGAAACGAAGCTCAAACACAGAGACAGAGAAAACCAAACTTCTGGAATCAAATGGTTATGTTCGCCTAGCTGCATTTCGGAAATTCATATTAGGACTCGGAATGGACAAGCCTGCCAATATCGTTGTCGGTTCTCAAATATGGGTGGGAGATATAGATTCTGTTTGGATTGATGGACTCGTATTGAACATCACTGGGGAAGATGCTGAGATTCAAACAAGTGATGGGAGGCAGGTGGTTGTAAAAATGTCAAATCTATATCCAAGGGATGCAGAAGCTCCTACTACTGGAATTGACGATATGACTAGAATGTCATATTTGAATGAGCCCGGGTTGCTGCATAATTTGGCTATCAGATATGCAATAAATGAAATCTATACTTATACTGGAAACATTCTTATTGCCATCAACCCATTCCAAAGTATTTCAAGTCTGTATGATGCCCATGTGATGGAGCAGTACAAGGGAGCACCAATTGGGGAGCTGAAGCCTCATGTTTTTGCAATTGCTGATGTTGCATATAGGGCTATGATAAATTATGGGAAAAGCAACTCCATTCTGGTAAGTGGTGAAAGTGGGGCTGGTAAGACCGAAACCACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCCATGCTGCATCTGAAGGACGGACTGTTGAACAACAAGTTTTAGAATCAAATCCAGTTCTTGAAGCTTTTGGCAATGCAAAAACAGTAAGAAACAATAATTCAAGCCGTTTTGGGAAATTCGTTGAGATCCAATTTGACAAGAAGGGAAGAATATCAGGAGCTGCCATCAGAACTTATCTTCTCGAGAGATCACGGGTTTGCCAAATATCAGACCCTGAGCGCAACTATCATTGCTTTTATCTTCTCTGTGCAGCTCCACCTCAGGAGAGAGAGAGATATAAGCTAGGAAATCCAAAATCATTTCACTATCTAAACCAATCAAACTGTTATGAACTGGCTGGTGTGAATGATGCTCATGATTATCTTGCTACAAAGAGAGCCATGGATATTGTTGGAATAGGTGAACAAGAGCAGGATGCAATTTTCAGAGTTGTGGCTGCAATTCTCCATCTTGGTAATATTGACTTTGCAAAAGGAGAAGAGTCTGATTCATCATTTGTGAAAGATGAAGAATCAAAATTTCATCTTCACATGACAGCAGAGCTTCTCATGTGTGATCCCCTTGCATTAGAAGATGCTCTTTGCAAGCGCATGATGATTACACCAGAGGACGTCATCAAGAGAAGTCTTGATCCACTTGGTGCAACAGTTAGCAGGGATGGATTAGCCAAGACAATATACTCTCGTTTGTTTGACTGGTTGGTAGATAAAATCAATTTTTCCATCGGACAAGATCCTGGCTCGAAATATCTGATCGGAGTACTTGATATTTATGGTTTTGAGAGCTTTCAAACAAATAGTTTTGAGCAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTCTTCAAGATGGAGCAAGAAGAATATGTAAAAGAGGAAATTGATTGGAGCTACATAGAGTTTGTTGATAATCAAGATGTCCTCGATCTCATCGAGAAGAAACCAGGTGGAATCATTGCTCTTCTTGATGAAGCTTGCATGTTCCCGAAATCAAATCATGAAACATTTTCACAAAAGCTATATCAAACCTTCAAAAATCATAAACGCTTCACCAAGCCAAAATTGGCCCGCTCAGATTTTACGATTGTTCATTATGCTGGAGATGTTCTATATCAGTCAGATCAGTTTCTAGACAAAAATAAAGATTATGTTGTCCCTGAACACCAAGATTTGTTAAGTGCTTCAAAATGTTCTTTTGTTGCTGGCCTCTTCTCTCCTCATCCTGAGGAAACGGCCAAATCATCAAAGTTTTCTTCAATTGGCTCTCGTTTTAAGTTACAACTACAGCAGTTGATGGAAACGTTAAATTCAACCGAACCCCATTATATAAGATGCGTGAAGCCCAATACTGTCCTGCAACCTGCCATCTTTGAGAATGCTACTGTTATGCAACAATTACGTTCTGGAGGTGTTTTGGAGGCAGTTAGAATCAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCTCGATTTGGAATTCTTGCACCCGAGGTATTGGAAGGGGACTATGAAGAGAAGGCAGCGTGCGAAAAGATTCTAGAGAAGATGGGACTTAAAGGTTATCTGATAGGGAAATCAAAAATTTTCCTAAGAGGTAATTTAATGGCCGAACTAGATGCACAAAGAACAGGAATATATAGTGCCGCTGCTATACTTATACAGAAGCATTTCAGAGCTCGAAATGATTGTAAAAAGTACATTGCCATGCGAAGAGCCTGCATTCTTCTACAATCATATTGGAGAGGTGTTCTTGCCCGTGAGTCATATGAAATTAGGAGAAGGGAAGCAGCTGCCGTCAAAATTCAAAAGAATGTTCGTGCATACCTTGTCAGGAGCCGTCATATTAAAATGAGGATCTCTACAGTTTTTCTTCAGGCTGGTATGCGTGCAATGGTTGCTCGGAGTGAATACAGAAACAGGAGGCAGGTTAAGGCAGCAAAAGTTATTCAATCTTATTGGCGTCAGTATAGAACCTCGTCGAGGTATAAGACGGTTAAAAAATCATCAACCAATTCACAATGCGGATTGTACTCAAAAACTTCTGGTGAAGGTCTTAAGAAGCAAAGGATGGCTAACTTGGAAGAAACAAAGGAGGATCTGGTTTTGCCTGCGTTGCTCAACAGCAGTACAGACACCATTGATGAAACAATTGAAATGATTGCCATGGAAAGCCGTGTTTCTCCACAAGAAATAGAAGAAGCATACTTTATTATTAAAGAGCCCGGTAGTCCAGTTAAAGGTGCAGATAAGGTGGTCACTCTCAGAGCAGAAGTGGCTAATCTAAAGGCCAAGTTGCAGGCTGAAAGGCAAAGAGCTAATGAGTATGAAAGGAAGTATGCTGTAACGCAGAAAGCAAATGAGGAAGGATGTAGAAAACTTAAAAAAACCGAAAGGAAGGTGCATCAACTTCAGGACTACATAAATAGGATGATACATTGCATGTCAAACCAAATCTCGGAGATGAAAATGATCGTGGGTACTTCTAGATCGGATGCATCTAGTTCTTCTCGGAACGAGGTTCTGACGGATGCCACATCTAGTTGCTCTGATTCATCATCAGAAGACTTCACCTTTCCTGTTCCAAGTCCATCTATACCAACTTTCTCTTCATTTGGTACCAATACTTTTCAGCTGATTGTGCAGGATATTTCAGCTGCAGAAATTCCAGGATCTGACAGTGACAGGGAAGGGGGATTTTCTGACTACTTCTAA | 3432 | 40.56 | MAELENSRLLPPQTMQHEKRSSNTETEKTKLLESNGYVRLAAFRKFILGLGMDKPANIVVGSQIWVGDIDSVWIDGLVLNITGEDAEIQTSDGRQVVVKMSNLYPRDAEAPTTGIDDMTRMSYLNEPGLLHNLAIRYAINEIYTYTGNILIAINPFQSISSLYDAHVMEQYKGAPIGELKPHVFAIADVAYRAMINYGKSNSILVSGESGAGKTETTKMLMCYLAFLGGHAASEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQERERYKLGNPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEQEQDAIFRVVAAILHLGNIDFAKGEESDSSFVKDEESKFHLHMTAELLMCDPLALEDALCKRMMITPEDVIKRSLDPLGATVSRDGLAKTIYSRLFDWLVDKINFSIGQDPGSKYLIGVLDIYGFESFQTNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSNHETFSQKLYQTFKNHKRFTKPKLARSDFTIVHYAGDVLYQSDQFLDKNKDYVVPEHQDLLSASKCSFVAGLFSPHPEETAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNTVLQPAIFENATVMQQLRSGGVLEAVRIKCAGYPTHRTFSEFLSRFGILAPEVLEGDYEEKAACEKILEKMGLKGYLIGKSKIFLRGNLMAELDAQRTGIYSAAAILIQKHFRARNDCKKYIAMRRACILLQSYWRGVLARESYEIRRREAAAVKIQKNVRAYLVRSRHIKMRISTVFLQAGMRAMVARSEYRNRRQVKAAKVIQSYWRQYRTSSRYKTVKKSSTNSQCGLYSKTSGEGLKKQRMANLEETKEDLVLPALLNSSTDTIDETIEMIAMESRVSPQEIEEAYFIIKEPGSPVKGADKVVTLRAEVANLKAKLQAERQRANEYERKYAVTQKANEEGCRKLKKTERKVHQLQDYINRMIHCMSNQISEMKMIVGTSRSDASSSSRNEVLTDATSSCSDSSSEDFTFPVPSPSIPTFSSFGTNTFQLIVQDISAAEIPGSDSDREGGFSDYF | 1143 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 7205743 | 7226022 | - | CcPI632755_09g007820.1 | Cco09g0782 | 187239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g0782 | 1143 | Gene3D | - | 303 | 361 | - | - | |
| Cco09g0782 | 1143 | ProSiteProfiles | Myosin motor domain profile. | 113 | 783 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0782 | 1143 | Gene3D | - | 786 | 835 | - | - | |
| Cco09g0782 | 1143 | Gene3D | - | 836 | 887 | - | - | |
| Cco09g0782 | 1143 | MobiDBLite | consensus disorder prediction | 1069 | 1095 | - | - | |
| Cco09g0782 | 1143 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 835 | 908 | IPR027417 | - | |
| Cco09g0782 | 1143 | PRINTS | Myosin heavy chain signature | 143 | 162 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0782 | 1143 | PRINTS | Myosin heavy chain signature | 480 | 508 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0782 | 1143 | PRINTS | Myosin heavy chain signature | 247 | 274 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0782 | 1143 | PRINTS | Myosin heavy chain signature | 533 | 561 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0782 | 1143 | PRINTS | Myosin heavy chain signature | 200 | 225 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0782 | 1143 | SMART | iq_5 | 808 | 830 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0782 | 1143 | SMART | iq_5 | 856 | 878 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0782 | 1143 | SMART | iq_5 | 881 | 903 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0782 | 1143 | SMART | iq_5 | 833 | 855 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0782 | 1143 | SMART | iq_5 | 785 | 807 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0782 | 1143 | FunFam | Class V myosin | 490 | 631 | - | - | |
| Cco09g0782 | 1143 | Gene3D | - | 490 | 674 | - | - | |
| Cco09g0782 | 1143 | Pfam | Myosin head (motor domain) | 116 | 771 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0782 | 1143 | SMART | MYSc_2a | 107 | 784 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0782 | 1143 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 87 | 836 | IPR027417 | - | |
| Cco09g0782 | 1143 | FunFam | Myosin 2 | 363 | 476 | - | - | |
| Cco09g0782 | 1143 | FunFam | Myosin heavy chain | 303 | 358 | - | - | |
| Cco09g0782 | 1143 | ProSiteProfiles | IQ motif profile. | 857 | 886 | - | - | |
| Cco09g0782 | 1143 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 363 | 652 | - | - | |
| Cco09g0782 | 1143 | ProSiteProfiles | IQ motif profile. | 809 | 838 | - | - | |
| Cco09g0782 | 1143 | ProSiteProfiles | IQ motif profile. | 834 | 861 | - | - | |
| Cco09g0782 | 1143 | ProSiteProfiles | IQ motif profile. | 882 | 911 | - | - | |
| Cco09g0782 | 1143 | Gene3D | - | 717 | 784 | - | - | |
| Cco09g0782 | 1143 | Coils | Coil | 991 | 1025 | - | - | |
| Cco09g0782 | 1143 | CDD | MYSc_Myo11 | 127 | 771 | IPR036018 | - | |
| Cco09g0782 | 1143 | PANTHER | MYOSIN | 74 | 1073 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Cco09g0782 | 1143 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 59 | 108 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco09g0782 | 1143 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Cco09g0782 | 1143 | Pfam | IQ calmodulin-binding motif | 884 | 903 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0782 | 1143 | Pfam | IQ calmodulin-binding motif | 810 | 829 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0782 | 1143 | Pfam | IQ calmodulin-binding motif | 836 | 854 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g0782 | 1143 | Gene3D | Kinesin motor domain | 116 | 713 | IPR036961 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco09g0345 | Cco-Chr9:3058115 | Cco09g0782 | Cco-Chr9:7205743 | 0.00E+00 | dispersed | |
| Cco09g0782 | Cco-Chr9:7205743 | Cco11g1900 | Cco-Chr11:31701923 | 3.50E-138 | dispersed | |
| Cco09g0782 | Cco-Chr9:7205743 | Cco06g0132 | Cco-Chr6:1302224 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g0782 | K10357 | - | csv:101220626 | 2013.42 |