Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g0831 | ATGGATGAAGATTTTGATATCCCTGCTGCCGCTGACATGAACGAGGACTTGGATCTTCCTGATGATACCATAGCTCTCAAGGTTGGGGAGGAGAAAGAAATTGGAAATCAAGGCTTGAAGAAGAAGCTTCTTAAAGAAGGTGAAGGATGGGTAACTCCTGAAAATGGCGATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGGACTCAGTTTGATTCCAGCCGCGATCGTGGAACCCCGTTTAAGTTCACTCTTGGTCAAGGACAAGTGATCAAAGGATGGGATTTGGGTATCAAAACAATGAAGAAAAATGAAAAAGCTCTTTTTACCATTCCTCCTGATTTGGCATATGGTGAATCTGGCTCCCCACCAACCATTCCTCCTAGTGCGACATTGCAGTTCGATGTCGAGTTACTATCTTGGACAAGCGTTAAGGACATATGTAAGGATGGAGGAATATTCAAGAAGATCCTAACTGAAGGGGACAAATGGGATAATCCAAAGGACCTTGATGAAGTGCTAGTCAATTTTGAAGCTAAGCTAGAAGATGGAACACTTGTTGCAAAAGCTGATGGAGTGGAATTCACTGTTGGGGATGGTTACTTTTGCCCTGCTCTCGCAAAGGCTGTAAAAACCATGAAGATAGGTGAAAAGGCACTCCTCACAGTGAAGCCACAATATGGGTTTGGGGAGAAAGGTAAATCAGCCTCTAGTAATGAAGGTGCAGTTCCACCAAATGCATCCCTCGATATTACTTTGGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGATAAAAAGGTTATCAAGAAAATTCTGAAAGAGGGAGAAGGTTATGAGAAGCCAAATGACGGAGCCATTGTCAAAGTGAAATTGATTGGGAAGTTGGGAGATGGCAAGATATTTTTGAGGAAGGGATATGATGATGGTGAAGAGCCATTTGAGTTTAAAACAGACGAGGAACAAGTGATTGATGGCCTCGACAAAACTGTGGTGACAATGAAGAAAGGTGAGATAGCCCTGCTGACAATAGCACCAGAGTATGCTTTTGGTTCGTCTGAGTCACAACAGGATTTGGCTATAGTTCCTCCAAACTCAACTGTGTATTACGAGGTTGAGCTTGTGGCTTTTGACAAGGAGAAAGAGTCATGGGATATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTCAAGTCTGGAAAATTTGCTAGAGCTTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAATACGATTCTTCATTTAGTGAAGAAGAGAAAAAGCAGGCTAAAGCATTGAAAGTTGCATGCAATTTGAACAATGCAGCTTGTAAATTGAAGCTAAAGATGTACAACGAGGCAGAGAAATTGTGCACCAAGGTGCTAGAACTTGAGAGTTCAAATGTTAAGGCTCTCTATAGAAGGGCTCAAGCATATATCCAACTAGCTGACTTGGATTTAGCTGAATTTGACATCAAGAAGGCTCTCGATATCGATCCGAATAACAGGGATGTGAAATTGGAATACAAAACTCTGAAGGAGAAGGTGAAGGAATACAATAAAAAGGATGCCAAGTTTTACGGCAACATGTTTGCCAAAATGAAGAAAGTAGAATCTGCCTAA | 1662 | 41.58 | MDEDFDIPAAADMNEDLDLPDDTIALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWDNPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVGDGYFCPALAKAVKTMKIGEKALLTVKPQYGFGEKGKSASSNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLIGKLGDGKIFLRKGYDDGEEPFEFKTDEEQVIDGLDKTVVTMKKGEIALLTIAPEYAFGSSESQQDLAIVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASKRYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKMYNEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKKVESA | 553 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 7747442 | 7751619 | + | CcPI632755_09g008310.1 | Cco09g0831 | 187288 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g0831 | 553 | Pfam | Tetratricopeptide repeat | 482 | 515 | IPR019734 | GO:0005515(InterPro) | |
| Cco09g0831 | 553 | SUPERFAMILY | FKBP-like | 264 | 399 | - | - | |
| Cco09g0831 | 553 | Gene3D | Tetratricopeptide repeat domain | 385 | 542 | IPR011990 | GO:0005515(InterPro) | |
| Cco09g0831 | 553 | ProSiteProfiles | TPR repeat profile. | 482 | 515 | IPR019734 | GO:0005515(InterPro) | |
| Cco09g0831 | 553 | FunFam | Peptidylprolyl isomerase | 148 | 261 | - | - | |
| Cco09g0831 | 553 | Gene3D | - | 31 | 147 | IPR046357 | GO:0003755(InterPro) | |
| Cco09g0831 | 553 | SUPERFAMILY | FKBP-like | 33 | 148 | - | - | |
| Cco09g0831 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 56 | 144 | IPR001179 | GO:0003755(InterPro) | |
| Cco09g0831 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 172 | 261 | IPR001179 | GO:0003755(InterPro) | |
| Cco09g0831 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 283 | 379 | IPR001179 | GO:0003755(InterPro) | |
| Cco09g0831 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 168 | 257 | IPR001179 | GO:0003755(InterPro) | |
| Cco09g0831 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 51 | 141 | IPR001179 | GO:0003755(InterPro) | |
| Cco09g0831 | 553 | SUPERFAMILY | TPR-like | 387 | 547 | IPR011990 | GO:0005515(InterPro) | |
| Cco09g0831 | 553 | FunFam | Peptidylprolyl isomerase | 29 | 147 | - | - | |
| Cco09g0831 | 553 | FunFam | Peptidylprolyl isomerase | 262 | 384 | - | - | |
| Cco09g0831 | 553 | Coils | Coil | 515 | 535 | - | - | |
| Cco09g0831 | 553 | SUPERFAMILY | FKBP-like | 148 | 264 | - | - | |
| Cco09g0831 | 553 | Gene3D | - | 262 | 383 | IPR046357 | GO:0003755(InterPro) | |
| Cco09g0831 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 289 | 382 | IPR001179 | GO:0003755(InterPro) | |
| Cco09g0831 | 553 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 31 | 143 | IPR050754 | - | |
| Cco09g0831 | 553 | FunFam | Peptidylprolyl isomerase | 387 | 542 | - | - | |
| Cco09g0831 | 553 | Gene3D | - | 148 | 261 | IPR046357 | GO:0003755(InterPro) | |
| Cco09g0831 | 553 | SMART | tpr_5 | 399 | 432 | IPR019734 | GO:0005515(InterPro) | |
| Cco09g0831 | 553 | SMART | tpr_5 | 482 | 515 | IPR019734 | GO:0005515(InterPro) | |
| Cco09g0831 | 553 | SMART | tpr_5 | 448 | 481 | IPR019734 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g0852 | Cco-Chr5:7173213 | Cco09g0831 | Cco-Chr9:7747442 | 5.00E-242 | dispersed | |
| Cco07g1590 | Cco-Chr7:29912663 | Cco09g0831 | Cco-Chr9:7747442 | 1.20E-10 | dispersed | |
| Cco09g0831 | Cco-Chr9:7747442 | Cco11g0692 | Cco-Chr11:7529511 | 4.20E-20 | dispersed | |
| Cco09g0831 | Cco-Chr9:7747442 | Cco05g0897 | Cco-Chr5:7759478 | 3.90E-18 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g0831 | K09571 | - | csv:101214513 | 1050.43 |