Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0832 ATGTCTCGAACACCGAATTATGAGTTCCAAGAATGGTGGAACAAGCAGAGAGAAAGGAACCATGATGAACACTTGCTGGAAAAGTCCGACAACTTATCGACCTCACCTGCATTTCTCTCTGTTGAGATCCGGAGTTCTGGGAGCCCTGGAGATCGGATGGCCGATAAGGACCGGGCGAGGACCAGGAGTGCCCGCCAGATTTCTTGGGTTTGGCTGTTGAAATTCCAGCAGATTGCTGGTTCATTGGCTTCAATCACCAATGGCGTCGTTTATCTAATTCGTACTGCTAATCGTCGGATCTCATCGCCGGATTCTCCAGCTGACTCGGCCTCGTCTCGGCTCTACAGGATTATCAAAGTGTTTTTGATTGTAGTGCTTCTATTGCTTGTTTTTGAGCTTGTGGCGTACTTCAATGGCTGGCATTTCAGTCCCCCTTCTGTGAGTTCCGCTTCTGCGGAAGTGCTTGGAATGATAGGGTTTCTCTATGCTAATTGGCTTCAGATTCGGGCAAATTACCTGGCGCCACCGCTGCAGTACTTGACCAATCTCTGCATTGTGTTGTTCCTGATCCAGTCAGTGGATCGTTTGCTTTTAATGTTTGGGTGTTTTTGGATCAAGTTTAGGCGATTGAAGCCTGTTGCGGCATTTGAGTACTCTTCCACGGATGAAAATGCTGCTAGTCCTGAGGATTATCCAATGGTATTGGTGCAGATTCCCATGTGCAATGAGAGGGAGGTTTATCAACAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCAAAGGATAAAATGCTTGTACAGGTTTTAGATGATTCTGATGAGCTAGATGTTCAACAACTTATCAAGGCTGAAGTACAAAAATGGCAACAGAGAGGTGTCCGCATATTGTATAGACACCGCCTCATACGTACAGGCTACAAGGCAGGGAATCTCAAATCTGCAATGGGGTGCGATTATGTAAAAGATTATGAGTTTGTGGCAATCTTTGATGCAGATTTTCAGCCAGGACCAGACTTTTTAAAGAAAACTATTCCACATTTTAAGGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCATTTGTGAACAAGGACGAAAACTTGCTCACAAGATTGCAGAACATAAATTTATCCTTCCATTTTGAAGTTGAGCAGCAAGTAAATGGCATGTTTATCAACTTTTTTGGTTTCAATGGTACTGCTGGAGTCTGGAGAATTAAAGCTTTGGAAGAATGTGGTGGCTGGTTAGAGAGAACAACTGTTGAGGACATGGATGTTGCAGTTCGTGCCCATCTTTGTGGCTGGAAGTTCATATATCTAAATGATGTGAAGTGCCTTTGTGAACTTCCAGAATCATATGAAGCGTACAAGAAACAACAGCACCGCTGGCATTCGGGCCCTATGCAGTTATTTCGTTTGTGCTTCTCTGACATACTCAAATCAAAGGTGAGTTGGAAGAAGAAAGCTAATTTGATTTTTCTCTTCTTCCTCTTGCGAAAGCTCGTCCTTCCCTTTTATTCCTTTACCTTGTTCTGCATAATTCTCCCCCTTACCATGTTCCTTCCAGAAGCTCATCTACCGGCTTGGGTCGTTTGCTACGTTCCTGGAATCATGTCCATCTTAAATATTCTTCCCGCACCGCGATCATTTCCATTTTTAGTCCCCTATCTTCTATTTGAAAACACCATGTCTGTTACCAAATTCAATGCCATGATATCAGGGTTATTCCGCTTTGGAAGTTCATACGAATGGATAGTAACAAAAAAACTAGGAAGATCATCTGAGAACAATCTTGTTGCTTTCGAAAAAGAACTAGAACCTCTAGTTGAGGGTACAAGTCTTCATCGATCTTCCTCAGAATCAGGTCTTCAAGAACTGACCAAGCTCGAGATATCGAAAAAAACAGGGAAACACAAAAGAAATCGTTTGTATAGGAAGGAATTGGCTCTTGCATTCATTTTGTTAACTGCCTCGGCGAGAAGCCTGTTATCTGCTCAAGGAATTCACTTCTACTTCCTATTATTTCAAGGTATCACTTTTCTAGTCGTCGGTCTCGATTTAATCGGAGAGCAGGTGCTAAGAGCAGGAATTTCTGAGGACACCGATGCTTTCCTTTAA 2121 43.19 MSRTPNYEFQEWWNKQRERNHDEHLLEKSDNLSTSPAFLSVEIRSSGSPGDRMADKDRARTRSARQISWVWLLKFQQIAGSLASITNGVVYLIRTANRRISSPDSPADSASSRLYRIIKVFLIVVLLLLVFELVAYFNGWHFSPPSVSSASAEVLGMIGFLYANWLQIRANYLAPPLQYLTNLCIVLFLIQSVDRLLLMFGCFWIKFRRLKPVAAFEYSSTDENAASPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDKMLVQVLDDSDELDVQQLIKAEVQKWQQRGVRILYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDVAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFSDILKSKVSWKKKANLIFLFFLLRKLVLPFYSFTLFCIILPLTMFLPEAHLPAWVVCYVPGIMSILNILPAPRSFPFLVPYLLFENTMSVTKFNAMISGLFRFGSSYEWIVTKKLGRSSENNLVAFEKELEPLVEGTSLHRSSSESGLQELTKLEISKKTGKHKRNRLYRKELALAFILLTASARSLLSAQGIHFYFLLFQGITFLVVGLDLIGEQVLRAGISEDTDAFL 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7755178 7762459 - CcPI632755_09g008320.1 Cco09g0832 187289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0832 706 Pfam Glycosyl transferase family group 2 326 528 IPR001173 -
Cco09g0832 706 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 159 693 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cco09g0832 706 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 222 450 IPR029044 -
Cco09g0832 706 FunFam probable xyloglucan glycosyltransferase 5 224 450 - -
Cco09g0832 706 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 510 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1854 Cco-Chr8:29555363 Cco09g0832 Cco-Chr9:7755178 1.40E-246 dispersed
Cco09g0832 Cco-Chr9:7755178 Cco09g2084 Cco-Chr9:35250693 7.50E-240 dispersed
Cco09g0832 Cco-Chr9:7755178 Cco02g2339 Cco-Chr2:35822416 3.60E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0832 - - - 0.0