Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0841 | ATGAACGATGTGAGAGGTCAAGAACAAATTCCTGAATTAGATTTTGGAAAATTGGAAGTGGTGACGGCCCTCGGCCGGGGAGCGAAAGGAGTCGTGTTCTTGGCTCGAAATGCGGCGGGGGACGACGACGGCGAATGGTTGGCCTTGAAGGTGATTTCCAGAGAATTAATCGAGAGGAAGGCCAAGATTGTGAATAGCGATGGAGCTGAGTATCGCAGAGTTTGCTTTGAACAAGAAGTTTTGCGGCTTTTTCGGCATCCGCTTTTGCCTCGATTGCGAGGAGTTTTGAATACTCAGAAAGTTGTGGGTTACGCCATTGATTATTGTAATGGACGAGATCTTAATACTCTCAGGAAAAATCAGACCGAAAAAATGTTCTCCGACGACGTTATTAGATTTTACGCTGCGGAATTAGTTATGGCGTTGGAGTATGTACACAGTCTAGGAATAGTTTACAGAGATTTGAAGCCGGAGAATGTTATGGTTCAACACAGCGGCCATATAATGCTTGTGGATTTTGATCTCTCTACCAGACTCTCTCAAAAATCTCCGAAATCGTCTCCGTCTCCGTCGCCGTCGCCATCGCCGGCGGTAGAGGTTTTGGCGGAGTCTAAATTCGCGATGAAGGAAAAGATTAACAAGAAAAAGAACAAGAAGCGATTCTTTCATTTTCACCGGTTCTGCAACTCCGGCGTATCACCGGAGGAATCCGAACATCAGGCAACGGCGGCGGAGAAACCAAGATCGCTGCCGGAGTCATCGGATTCGGAGTCGTCGGAGAAGTCGAACTCGTTCGTGGGAACAGAGGACTACGTGGCACCGGAAATCGTTGCCGGGAAGGGTCATGACTTCGCCGTGGACTGGTGGTCACTCGGCGTAGTTCTGTACGAGATGCTGTACGGAACGACGCCATTTAGGGGCTCGAATCGGAAGGAAACATTCTACCGGATTCTAACGAAAACGCCGGATCTGTGCGGCGAAGCGACGGCGTTAAGGGATTTGATCAGGAAGTTGCTGGAGAAAGATCCGAAGAAGAGAATCGAACTGGAGGAAATCAAGGGCCACGATTTCTTTAAAGGGACTGACTGGGATTTAGTTCTGGAAATGCCCCGGCCGCCGACGCTGCCTGAAATGGCGGAAGAGGACATAAATGGAAATAACTTAATTGATGTGGAGTCTTTTGTACAAGACGTATTTTGCAGAGAAATGGAGAAGAAGAATCAAATTAACGGTGATGAAGGAAAAGGGTTAATTCCTAATTACACGGACTCTGACACATTTTATGTATTCTAA | 1293 | 47.49 | MNDVRGQEQIPELDFGKLEVVTALGRGAKGVVFLARNAAGDDDGEWLALKVISRELIERKAKIVNSDGAEYRRVCFEQEVLRLFRHPLLPRLRGVLNTQKVVGYAIDYCNGRDLNTLRKNQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPENVMVQHSGHIMLVDFDLSTRLSQKSPKSSPSPSPSPSPAVEVLAESKFAMKEKINKKKNKKRFFHFHRFCNSGVSPEESEHQATAAEKPRSLPESSDSESSEKSNSFVGTEDYVAPEIVAGKGHDFAVDWWSLGVVLYEMLYGTTPFRGSNRKETFYRILTKTPDLCGEATALRDLIRKLLEKDPKKRIELEEIKGHDFFKGTDWDLVLEMPRPPTLPEMAEEDINGNNLIDVESFVQDVFCREMEKKNQINGDEGKGLIPNYTDSDTFYVF | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 7910846 | 7912223 | + | CcPI632755_09g008410.1 | Cco09g0841 | 187298 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0841 | 430 | MobiDBLite | consensus disorder prediction | 232 | 265 | - | - | |
Cco09g0841 | 430 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 150 | 162 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g0841 | 430 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 359 | 430 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0841 | 430 | FunFam | Serine/threonine-protein kinase OXI1 | 260 | 377 | - | - | |
Cco09g0841 | 430 | Gene3D | Transferase(Phosphotransferase) domain 1 | 257 | 377 | - | - | |
Cco09g0841 | 430 | ProSiteProfiles | Protein kinase domain profile. | 18 | 358 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0841 | 430 | PANTHER | FLIPPASE KINASE 1-RELATED | 9 | 380 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Cco09g0841 | 430 | Gene3D | Phosphorylase Kinase; domain 1 | 18 | 112 | - | - | |
Cco09g0841 | 430 | MobiDBLite | consensus disorder prediction | 239 | 255 | - | - | |
Cco09g0841 | 430 | FunFam | Serine/threonine-protein kinase OXI1 | 113 | 181 | - | - | |
Cco09g0841 | 430 | SUPERFAMILY | Protein kinase-like (PK-like) | 16 | 384 | IPR011009 | - | |
Cco09g0841 | 430 | Pfam | Protein kinase domain | 19 | 187 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0841 | 430 | Pfam | Protein kinase domain | 257 | 358 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0841 | 430 | Gene3D | Transferase(Phosphotransferase) domain 1 | 113 | 185 | - | - | |
Cco09g0841 | 430 | SMART | serkin_6 | 18 | 358 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g0841 | 430 | MobiDBLite | consensus disorder prediction | 179 | 198 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2490 | Cco-Chr2:37248961 | Cco09g0841 | Cco-Chr9:7910846 | 3.10E-76 | dispersed | |
Cco09g0841 | Cco-Chr9:7910846 | Cco10g1370 | Cco-Chr10:26715631 | 1.60E-54 | dispersed | |
Cco09g0841 | Cco-Chr9:7910846 | Cco04g1196 | Cco-Chr4:27412527 | 1.80E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87094 | PF00069 | Pkinase | 4.50E-30 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0841 | K20714 | - | csv:101223223 | 660.218 |