Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0841 ATGAACGATGTGAGAGGTCAAGAACAAATTCCTGAATTAGATTTTGGAAAATTGGAAGTGGTGACGGCCCTCGGCCGGGGAGCGAAAGGAGTCGTGTTCTTGGCTCGAAATGCGGCGGGGGACGACGACGGCGAATGGTTGGCCTTGAAGGTGATTTCCAGAGAATTAATCGAGAGGAAGGCCAAGATTGTGAATAGCGATGGAGCTGAGTATCGCAGAGTTTGCTTTGAACAAGAAGTTTTGCGGCTTTTTCGGCATCCGCTTTTGCCTCGATTGCGAGGAGTTTTGAATACTCAGAAAGTTGTGGGTTACGCCATTGATTATTGTAATGGACGAGATCTTAATACTCTCAGGAAAAATCAGACCGAAAAAATGTTCTCCGACGACGTTATTAGATTTTACGCTGCGGAATTAGTTATGGCGTTGGAGTATGTACACAGTCTAGGAATAGTTTACAGAGATTTGAAGCCGGAGAATGTTATGGTTCAACACAGCGGCCATATAATGCTTGTGGATTTTGATCTCTCTACCAGACTCTCTCAAAAATCTCCGAAATCGTCTCCGTCTCCGTCGCCGTCGCCATCGCCGGCGGTAGAGGTTTTGGCGGAGTCTAAATTCGCGATGAAGGAAAAGATTAACAAGAAAAAGAACAAGAAGCGATTCTTTCATTTTCACCGGTTCTGCAACTCCGGCGTATCACCGGAGGAATCCGAACATCAGGCAACGGCGGCGGAGAAACCAAGATCGCTGCCGGAGTCATCGGATTCGGAGTCGTCGGAGAAGTCGAACTCGTTCGTGGGAACAGAGGACTACGTGGCACCGGAAATCGTTGCCGGGAAGGGTCATGACTTCGCCGTGGACTGGTGGTCACTCGGCGTAGTTCTGTACGAGATGCTGTACGGAACGACGCCATTTAGGGGCTCGAATCGGAAGGAAACATTCTACCGGATTCTAACGAAAACGCCGGATCTGTGCGGCGAAGCGACGGCGTTAAGGGATTTGATCAGGAAGTTGCTGGAGAAAGATCCGAAGAAGAGAATCGAACTGGAGGAAATCAAGGGCCACGATTTCTTTAAAGGGACTGACTGGGATTTAGTTCTGGAAATGCCCCGGCCGCCGACGCTGCCTGAAATGGCGGAAGAGGACATAAATGGAAATAACTTAATTGATGTGGAGTCTTTTGTACAAGACGTATTTTGCAGAGAAATGGAGAAGAAGAATCAAATTAACGGTGATGAAGGAAAAGGGTTAATTCCTAATTACACGGACTCTGACACATTTTATGTATTCTAA 1293 47.49 MNDVRGQEQIPELDFGKLEVVTALGRGAKGVVFLARNAAGDDDGEWLALKVISRELIERKAKIVNSDGAEYRRVCFEQEVLRLFRHPLLPRLRGVLNTQKVVGYAIDYCNGRDLNTLRKNQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPENVMVQHSGHIMLVDFDLSTRLSQKSPKSSPSPSPSPSPAVEVLAESKFAMKEKINKKKNKKRFFHFHRFCNSGVSPEESEHQATAAEKPRSLPESSDSESSEKSNSFVGTEDYVAPEIVAGKGHDFAVDWWSLGVVLYEMLYGTTPFRGSNRKETFYRILTKTPDLCGEATALRDLIRKLLEKDPKKRIELEEIKGHDFFKGTDWDLVLEMPRPPTLPEMAEEDINGNNLIDVESFVQDVFCREMEKKNQINGDEGKGLIPNYTDSDTFYVF 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7910846 7912223 + CcPI632755_09g008410.1 Cco09g0841 187298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0841 430 MobiDBLite consensus disorder prediction 232 265 - -
Cco09g0841 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0841 430 ProSiteProfiles AGC-kinase C-terminal domain profile. 359 430 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0841 430 FunFam Serine/threonine-protein kinase OXI1 260 377 - -
Cco09g0841 430 Gene3D Transferase(Phosphotransferase) domain 1 257 377 - -
Cco09g0841 430 ProSiteProfiles Protein kinase domain profile. 18 358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0841 430 PANTHER FLIPPASE KINASE 1-RELATED 9 380 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco09g0841 430 Gene3D Phosphorylase Kinase; domain 1 18 112 - -
Cco09g0841 430 MobiDBLite consensus disorder prediction 239 255 - -
Cco09g0841 430 FunFam Serine/threonine-protein kinase OXI1 113 181 - -
Cco09g0841 430 SUPERFAMILY Protein kinase-like (PK-like) 16 384 IPR011009 -
Cco09g0841 430 Pfam Protein kinase domain 19 187 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0841 430 Pfam Protein kinase domain 257 358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0841 430 Gene3D Transferase(Phosphotransferase) domain 1 113 185 - -
Cco09g0841 430 SMART serkin_6 18 358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0841 430 MobiDBLite consensus disorder prediction 179 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2490 Cco-Chr2:37248961 Cco09g0841 Cco-Chr9:7910846 3.10E-76 dispersed
Cco09g0841 Cco-Chr9:7910846 Cco10g1370 Cco-Chr10:26715631 1.60E-54 dispersed
Cco09g0841 Cco-Chr9:7910846 Cco04g1196 Cco-Chr4:27412527 1.80E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87094 PF00069 Pkinase 4.50E-30 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0841 K20714 - csv:101223223 660.218