Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0858 ATGCTCTTCCAAGACGGTGTGACTTGTTTGCATTCACATGGTATGACTATGCTGTGCTCATGTTGCCCTAGAGTAAGAGTATCTGATGAAGGAAATCAGAAGAAGCCAAATAATCCTATCGACGCCTTCCACAATGTTCTTTGCATCGATCAGATTGTGGATCTCCTTGCTGAGGAGCCAAACTACATTGGAAAAACAAATATTAGAATTATAGTGAGTGATAAACAACTACCAAAGGAACTTCCCTTCTCTCTTTATAACCCACCAACCCTCTCTGCCTCTCTTCACAACTCTTCTCATTTCCGAGCTATGGAAAACACTAAACTTTCATTACCTCTCTTTGCTGCTTTACTCCTCACAAATGCTATTGTTGTTTTAGCCAATTCCAATGAGAATAGTGACATGAATAATAACTTGAGTGTCATAGAAAACTCATGTGCCATTACTCTTTATCCTCAACTATGTCAATCAACAATTTACTCCATCGTCGGAACATCCAACTTGTTGAGTTTGAAAGATATTGTTGAAGTGTCATTGAGTGTTGCTGTTGATGCAGCTAAGCATAACTACAAAAACATCAACAAACTTTGGATGTCACTTAATGATGTTAGTAAACGAGACAAGATTGCGCTTCGTGATTGTGTGGAAACCACAGACAGGGCGATTTATGAACTTCACAAGGCCGTAGAGGATCTTCGGGAGTATCCCAACAAGAAATCTCTTACCTTGTACGCTGATGACCTCAAAACCTTTCTCAGTTCTGCCATTACTAATCAGGAGACTTGTTTGGAGGGATTGTCACATGAGAAAACAGAGAAAAGGGTGTTGAAGCTGATTGAAAGCACACATATTCACGTGACAAAGTTGTGTAGTAATACATTGGCTTTGGTTAAGAAATTGACACACACTGATTTTACAAATCAACAAACCAATAAAATAACCTCTGACCACCCCGCAATTGTACTCTTTTCCCACCATGTCGATCAGGAGGAAGGTGAGAATAGAGGAATTAGGGAGGATTTAGAAGACGGAATAAAGTGGCCAGAATGGATGGCGAGCCGTGACCGGAGGCTTTTGGAGTCATCGTACGAAGCTACGGCGGACGTGGTGGTGGCGGCGGATGGAAGTGGAAATTATAAAACGGTGTCGGAGGCGGTGGCGGCGGCGCCGAGTAAGAGCAGCAAAAGATATGTAATAAGAATAAAGGGTGGAGTTTACAAGGAAAATGTTGATGTGCCAAGTAGTAAAACCAATATCATGTTTTGGGGAGATGGAAGATCCAACACCATTATCACTGCGAGCAGAAGTGTTGGGGGTGGCAGTACAACCTTCAATTCCGCCACAGTTGCTGCTGTGGGGGATGGATTTTTAGCTCGGGACATAACCTTTCAAAACACAGCAGGAGCAGCCAATGACCAAGCTGTAGCTCTCCGTGTTGGCTCAGATCGCTCAGCCTTCTACCGTTGTGGCATGCTAGCCTACCAAGACACTCTCTACGTCCACTCGAACCGTCAGTTCTTCGTCAACTGTGTCGTTGCGGGCACAGTCGATTTCATCTTCGGAAACGCAGCAGTCGTATTCCAAAACTCTGACCTCACCCCTCGCAAACCAGGCCCTAAGCAACAGAACATGGTCACAGCACAAGGAAGAACCGACCCGAATCAAAACACGGGAATCGTGATCCAAAAGTGTACGATAAAAGCGACGTCGGACTTGGAGCCGGTGATAAAAGAATTCCCAAGCTTCCTTGGGAGGCCATGGAAGGATTATGCTAGGGTTGTGGTAATGCAAACGGACATAACCAATGTGATAGACTCAAAAGGGTGGGCGCCATGGGGTAGTGAAATAAAGAAACCCTACTTTGCGGAATATGACAATAATGGAGCTGGAGCCAATACTTGTTGTAGAGTGACATGGTCTACCATTATTAATGCAGCTCAAGCTAAAACCTTTACGGCTGGACCATTCATTGATGGTGCTAATTGGCTCCCATCTACTGACTTCCCCTATCAGCTTGGCCTCTAA 2025 44.35 MLFQDGVTCLHSHGMTMLCSCCPRVRVSDEGNQKKPNNPIDAFHNVLCIDQIVDLLAEEPNYIGKTNIRIIVSDKQLPKELPFSLYNPPTLSASLHNSSHFRAMENTKLSLPLFAALLLTNAIVVLANSNENSDMNNNLSVIENSCAITLYPQLCQSTIYSIVGTSNLLSLKDIVEVSLSVAVDAAKHNYKNINKLWMSLNDVSKRDKIALRDCVETTDRAIYELHKAVEDLREYPNKKSLTLYADDLKTFLSSAITNQETCLEGLSHEKTEKRVLKLIESTHIHVTKLCSNTLALVKKLTHTDFTNQQTNKITSDHPAIVLFSHHVDQEEGENRGIREDLEDGIKWPEWMASRDRRLLESSYEATADVVVAADGSGNYKTVSEAVAAAPSKSSKRYVIRIKGGVYKENVDVPSSKTNIMFWGDGRSNTIITASRSVGGGSTTFNSATVAAVGDGFLARDITFQNTAGAANDQAVALRVGSDRSAFYRCGMLAYQDTLYVHSNRQFFVNCVVAGTVDFIFGNAAVVFQNSDLTPRKPGPKQQNMVTAQGRTDPNQNTGIVIQKCTIKATSDLEPVIKEFPSFLGRPWKDYARVVVMQTDITNVIDSKGWAPWGSEIKKPYFAEYDNNGAGANTCCRVTWSTIINAAQAKTFTAGPFIDGANWLPSTDFPYQLGL 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8087328 8093784 + CcPI632755_09g008580.1 Cco09g0858 187315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0858 674 Gene3D Invertase/pectin methylesterase inhibitor family protein 138 302 IPR035513 -
Cco09g0858 674 Gene3D - 362 674 IPR012334 -
Cco09g0858 674 MobiDBLite consensus disorder prediction 532 552 - -
Cco09g0858 674 Pfam Pectinesterase 368 659 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco09g0858 674 FunFam Pectinesterase 138 301 - -
Cco09g0858 674 NCBIfam pectinesterase inhibitor domain 114 301 IPR006501 GO:0004857(InterPro)
Cco09g0858 674 PANTHER PECTINESTERASE 116 665 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco09g0858 674 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 141 301 IPR035513 -
Cco09g0858 674 ProSitePatterns Pectinesterase signature 2. 512 521 IPR033131 -
Cco09g0858 674 SUPERFAMILY Pectin lyase-like 365 672 IPR011050 -
Cco09g0858 674 CDD PMEI-like_3 145 301 - -
Cco09g0858 674 FunFam Pectinesterase 362 674 - -
Cco09g0858 674 SMART PMEI_2 137 296 IPR006501 GO:0004857(InterPro)
Cco09g0858 674 ProSitePatterns Pectinesterase signature 1. 393 412 IPR018040 -
Cco09g0858 674 Pfam Plant invertase/pectin methylesterase inhibitor 141 296 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0143 Cco-Chr9:1255122 Cco09g0858 Cco-Chr9:8087328 6.40E-176 dispersed
Cco09g0858 Cco-Chr9:8087328 Cco11g0021 Cco-Chr11:278329 2.90E-92 dispersed
Cco09g0858 Cco-Chr9:8087328 Cco07g1508 Cco-Chr7:29131980 1.10E-182 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0858 K01051 - csv:101221055 855.514