Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0884 ATGGAACTTCATCTCTTGTGGGTTGGCATCTTCCTTTGCTCTGGATTTTGGTCTCTTGCATTGAGTGATCAAGATGGTTTCCTAAGCTTATCTTGTGGAGCAACTACCACCTTCACTGACTCCTCCAACATTTTATGGAATCCGGACGTCGACTACATCAGCTCCGGTAACGCGTCAATCATCGACAATAACCATGTTCGAATCTTCCCCGACCCCCGAGCGCGAAATTGTTACAAGCTACCACTTAAAAATAGCTCCTCATCAGTTCTCATCAGAGCTGAGTTTGTGTATAAAAACTATGACAAGCTTGGGAAGCCCCCTGCATTCTTTGTTTCTCTTGGGACTGCCATAACTAGCAATGTGAACCTTACTTTTCATGACCCTTGGACTGAGGAGTTTGTATGGCCAGTTAACAAAGAAACTGTCTCCTTTTGTTTACATTCCATTCCTCAAGGTGGCAGCCCTTTGATATCTTCGATTGAACTCCGCCCGCTACCGCGAGGAGCGTACGAAGATGATGGCTTGCTTCAGAGTCAGGCTCTTAGAAAGTCGTATCGAATCAATTGTGGCTATACTAATGGATCTCTCAGGTACCCGATTGATCCATACGACCGAATATGGGACGCTGACCGCAACTTCAAGCCATTTCATGTGTCATCAGGGTTCAAAGTTGAGGCCAACTTTGATTTGATAGGAGTGAAGGAAGCTCCACCAGCTGCAATTGTTGAAACAGCAAGAGTTTTGACAAGAAGAGATGAGCTAAGCTACAACCTTCCACTTGAAGAGGAAGAAGGAAACTACTATGTGATTCTTTATTTTGGTGGGATTCTTGCTGTTCATCCTTCATTTGATGTATTGATCAATGGGAGAGTTATAGAATCAAACTACACTTTTGAAAAGGGAGAGATGAGGGCTTTGTATGTCATTCAATACCAAATCAAGACCTTGAAAATCACTCTCAAGAGTGTTAACTTCTATCCTCAAATCAATGCTATTGAGGTCTATCAGATTGTTCATATTCCTTTGGAAGCTTCATCAACCACAGTTTCAGCCCTTCAGGTGATTCATCAATCTATTGGTTTGAATTTGGGATGGGAAGATGATCCATGTTCCCCAACAACATGGGATCATGTTGGATGTGAAGGAAACCTTGTTACATCTCTAGAGCTTTCCAACATCAACTTGAGGTCGATCGGCCCGACGTTTGGCGACATTCTTGATCTCAAAATACTGGATTTGCACAACACTTCACTTTCAGGAGAAATACAAAATTTGGGCAGTCTCACTCATCTTCAAAATTTGAACTTGAGTTTCAACAAGCTAACATCATTTGGGTCAGATTTGGAGAACCTTAGCAACCTCAAAATTCTGGACTTGCAGAACAATAGTCTGCAGGGAATTGTTCCAGACAGCTTGGGAGAACTTGAAGATCTTCAATTATTGAATTTGGAGAACAATAGACTGGAAGGCACCCTCCCATTGTCTTTGAACAAAGGAAGTCTGGAAATTAGAACAATAGGAAACCCTTGTCTGTCATTCTCCACAATGACATGCAATGATGTATCATCAAATCCAGCCATTGAAACACCACAAGTCACAGTTGTTCCTGAGAAGAAGGGGATGAGCAGCAGCCATAATAATACTAACAATCATTTGCCTATCATAATTATTGTTTCTGCAGTTGCTTCAGCTTTGCTACTTCTCATCACTCTCTCCCTTTCACTTCTACTCTACCTGAGAAACCAATCTCAACACACAACAACTCAACTCACATACTCAACAAAAGCAGCAATGGAGCTAAGGAATTGGAACTCAGCAAGAGTATTCTCGTACAAGGAGATAAAGTCAGCCACAAACAACTTCAAGGAAGTGATTGGAAGAGGAAGCTTTGGATCAGTCTATCTTGGAAAGCTTCCGGATGGAAAACTTGTGGCTGTCAAAGTAAGGTTTGACAAAACCCAACTTGGGACTGACTCCTTTATCAACGAGGTTCACCTTTTGTCTCAAATTCGCCATCAAAATCTTGTTTGTTTGGAAGGATTTTGTAATGAATCCAAACGACAAATACTTGTTTATGAGTATTTACCTGGTGGATCATTGGCTGACCACATATATGGCATCAACAAAAAAAGTGTTTCTCTTAGTTGGATTAGAAGACTCAAAGTTGCTGTTGATGCAGCAAAAGGGTTGGACTACTTACACAATGGAAGTGAGCCAAGAATAATCCACAGAGATGTGAAGTGTAGTAACATTCTTTTGGATATGGAAATGAATGCAAAAGTTTGTGACTTTGGCCTTTCCAAGCAAATTTCACATCCTGATGCAACTCATGTCACCACTGTTGTCAAGGGCACTGCTGGTTATTTGGATCCTGAGTATTATTCCACTCAACAGTTAACTGAAAAGAGCGACGTGTATAGTTTTGGAGTTGTGTTATTGGAGCTTATTTGTGGAAGAGAGCCTTTGAGTCACACAGGAAATCCAGATTCTTTCAACTTGGTGCTATGGGCAAAACCATACTTACAAGCAGGTGCATTTGAGATAGTAGATGAAAAATTGAGAGGAAGGTTTGATGTTGAAAGTATGAAAAAGGCAGCTCTTGTTGCTATAAGGTGTGTGGAAAGAGATGCTTCTCAAAGGCCTAATATTGCACGAGTTTTGGCAGAGCTACAAGATGCTTATGATGCACAGATTGCATATCTTTCTACTTTTCACCATTGA 2721 41.16 MELHLLWVGIFLCSGFWSLALSDQDGFLSLSCGATTTFTDSSNILWNPDVDYISSGNASIIDNNHVRIFPDPRARNCYKLPLKNSSSSVLIRAEFVYKNYDKLGKPPAFFVSLGTAITSNVNLTFHDPWTEEFVWPVNKETVSFCLHSIPQGGSPLISSIELRPLPRGAYEDDGLLQSQALRKSYRINCGYTNGSLRYPIDPYDRIWDADRNFKPFHVSSGFKVEANFDLIGVKEAPPAAIVETARVLTRRDELSYNLPLEEEEGNYYVILYFGGILAVHPSFDVLINGRVIESNYTFEKGEMRALYVIQYQIKTLKITLKSVNFYPQINAIEVYQIVHIPLEASSTTVSALQVIHQSIGLNLGWEDDPCSPTTWDHVGCEGNLVTSLELSNINLRSIGPTFGDILDLKILDLHNTSLSGEIQNLGSLTHLQNLNLSFNKLTSFGSDLENLSNLKILDLQNNSLQGIVPDSLGELEDLQLLNLENNRLEGTLPLSLNKGSLEIRTIGNPCLSFSTMTCNDVSSNPAIETPQVTVVPEKKGMSSSHNNTNNHLPIIIIVSAVASALLLLITLSLSLLLYLRNQSQHTTTQLTYSTKAAMELRNWNSARVFSYKEIKSATNNFKEVIGRGSFGSVYLGKLPDGKLVAVKVRFDKTQLGTDSFINEVHLLSQIRHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGINKKSVSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQISHPDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHTGNPDSFNLVLWAKPYLQAGAFEIVDEKLRGRFDVESMKKAALVAIRCVERDASQRPNIARVLAELQDAYDAQIAYLSTFHH 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8300892 8312683 - CcPI632755_09g008840.1 Cco09g0884 187341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0884 906 SMART LRR_typ_2 451 474 IPR003591 -
Cco09g0884 906 SMART LRR_typ_2 475 499 IPR003591 -
Cco09g0884 906 SMART LRR_typ_2 428 450 IPR003591 -
Cco09g0884 906 Pfam Protein kinase domain 621 888 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0884 906 FunFam serine/threonine-protein kinase PBS1-like 587 694 - -
Cco09g0884 906 Pfam Leucine rich repeat 430 488 IPR001611 GO:0005515(InterPro)
Cco09g0884 906 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524(InterPro)
Cco09g0884 906 Gene3D - 182 338 - -
Cco09g0884 906 ProSiteProfiles Leucine-rich repeat profile. 430 452 IPR001611 GO:0005515(InterPro)
Cco09g0884 906 Gene3D Ribonuclease Inhibitor 349 531 IPR032675 -
Cco09g0884 906 CDD STKc_IRAK 625 891 - -
Cco09g0884 906 ProSiteProfiles Protein kinase domain profile. 619 894 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0884 906 Gene3D Transferase(Phosphotransferase) domain 1 695 902 - -
Cco09g0884 906 Gene3D Phosphorylase Kinase; domain 1 592 694 - -
Cco09g0884 906 PANTHER OS07G0107800 PROTEIN-RELATED 447 893 - -
Cco09g0884 906 SMART serkin_6 619 894 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0884 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 741 753 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0884 906 SUPERFAMILY Protein kinase-like (PK-like) 594 888 IPR011009 -
Cco09g0884 906 Pfam Malectin-like domain 30 337 IPR024788 -
Cco09g0884 906 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 695 901 - -
Cco09g0884 906 SUPERFAMILY L domain-like 350 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0884 Cco-Chr9:8300892 Cco10g2052 Cco-Chr10:33903821 2.00E-96 dispersed
Cco09g0884 Cco-Chr9:8300892 Cco09g0893 Cco-Chr9:8380499 1.50E-62 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87095 PF12819 Malectin_like 1.50E-51 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0884 - - - 0.0