Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0893 ATGAGTTGCTTTCCATGTTTTTCATCTCATGGGAAAGCAGCAAGAAGAACAAAGAGTGGTAGAAAGGAACAGTCTGTTTCGTCGCATTCTCGTAGTCATAAACAACAACAACAACAACCGCCGCCGCAACAACAACATCGTCCGGCTCCTCCTCCTCCACGTCCTACGCCTACAGACATTCCAAAGGGAAATCAGGTTCAAAGGGAAGCAGAGAAAGAGAAAGAGAAAGAGAATGAGATTATTGCGGAAAAGAATAACATTGCAGCACAAACCTTCACCTTCAGAGAATTGGCCACTGCTACAAAGAATTTCCGTCAAGAATGTCTCATTGGTGAAGGAGGGTTTGGGAGAGTTTACAAAGGAAAACTCGATAAAACTAATCAGGTTGTAGCAGTGAAGCAGCTTGACAGAAATGGATTGCAAGGGAACAGAGAGTTTCTTGTGGAAGTTTTGATGCTAAGCCTTTTACACCATCAAAACCTTGTCAATCTCATTGGCTATTGTGCAGATGGTGATCAAAGACTCTTGGTCTATGAGTACATGCCTTTAGGATCTCTAGAAGATCATCTACTTGATCTTCCATATGGAAGGAAGGCATTGGATTGGGGAACAAGGATGAAAGTAGGGTTGGGAGCAGCAAAAGGGCTAGAATACTTGCATAACAAAGCCAACCCACCAGTGATATATAGAGACTTGAAATCATCAAACATACTATTGGACGGTGATTACAATGCAAAGCTGTCAGATTTTGGACTTGCAAAGCTTGGTCCTGTTGGAGACAAGTCCCATGTTTCCTCCAGAGTTATGGGAACCTATGGATATTGTGCTCCTGAGTATCAAAGAACTGGTCAACTTACTCTCAAATCTGATGTCTATAGCTTTGGAGTCGTTTTGTTGGAACTCATCACTGGCAAGAGAGTCATCGACAACACTCGTCCAGCTAAACAACAAAACTTGGTCGCTTGGGCATGCCCAATATTCAAGGAACCAGCTAGATTCAAGGAGTTGGCAGATCCTCTTCTTGGTGGAGACTTTCCTATAAGGGCTCTGAACCAAGCGATCGCGGTCGCCGCCATGTGCCTCCATGAGGAAGCGACGACCCGACCGTTGATCTGTGACGTTGTCACTGCCCTCAGCTTCTTAGGAGCAGAAGCCACACAGTCGTCGAGGTCTTCGTCGTTAGGTGATGTCCCATCACCCGTTGATGATTCCAATTTGATGAATCTATCCAAACCCATCGACTATCTTTACAATGACGAAACAGCTGAGGCACGCCAACGAGCGGTCGCCGAGGCCATGGAATGGGGTTCGTCCTCCAAGCAAAATGCTGCAGCTTCGAGCCCCGGAAGTTCTTCTTCCTTGTAA 1365 45.71 MSCFPCFSSHGKAARRTKSGRKEQSVSSHSRSHKQQQQQPPPQQQHRPAPPPPRPTPTDIPKGNQVQREAEKEKEKENEIIAEKNNIAAQTFTFRELATATKNFRQECLIGEGGFGRVYKGKLDKTNQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPYGRKALDWGTRMKVGLGAAKGLEYLHNKANPPVIYRDLKSSNILLDGDYNAKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTLKSDVYSFGVVLLELITGKRVIDNTRPAKQQNLVAWACPIFKEPARFKELADPLLGGDFPIRALNQAIAVAAMCLHEEATTRPLICDVVTALSFLGAEATQSSRSSSLGDVPSPVDDSNLMNLSKPIDYLYNDETAEARQRAVAEAMEWGSSSKQNAAASSPGSSSSL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8380499 8383814 - CcPI632755_09g008930.1 Cco09g0893 187350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0893 454 SUPERFAMILY Protein kinase-like (PK-like) 90 387 IPR011009 -
Cco09g0893 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0893 454 FunFam Serine/threonine-protein kinase PBS1 181 394 - -
Cco09g0893 454 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524(InterPro)
Cco09g0893 454 SMART serkin_6 104 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0893 454 Pfam Protein kinase domain 106 375 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0893 454 MobiDBLite consensus disorder prediction 65 82 - -
Cco09g0893 454 Coils Coil 66 87 - -
Cco09g0893 454 Gene3D Phosphorylase Kinase; domain 1 62 180 - -
Cco09g0893 454 CDD STKc_IRAK 110 378 - -
Cco09g0893 454 Gene3D Transferase(Phosphotransferase) domain 1 181 396 - -
Cco09g0893 454 FunFam Serine/threonine-protein kinase PBS1 72 180 - -
Cco09g0893 454 MobiDBLite consensus disorder prediction 427 454 - -
Cco09g0893 454 MobiDBLite consensus disorder prediction 43 59 - -
Cco09g0893 454 PANTHER OS07G0668900 PROTEIN 37 390 - -
Cco09g0893 454 MobiDBLite consensus disorder prediction 435 454 - -
Cco09g0893 454 MobiDBLite consensus disorder prediction 1 82 - -
Cco09g0893 454 ProSiteProfiles Protein kinase domain profile. 104 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1134 Cco-Chr3:21596316 Cco09g0893 Cco-Chr9:8380499 7.20E-121 dispersed
Cco09g0893 Cco-Chr9:8380499 Cco10g2058 Cco-Chr10:33962794 1.10E-130 dispersed
Cco09g0884 Cco-Chr9:8300892 Cco09g0893 Cco-Chr9:8380499 1.50E-62 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87096 PF00069 Pkinase 5.00E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0893 - - - 0.0