Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0907 ATGTATTCATGGGTTTCGGGAGAAACGGCATTTTTCTCTGAGGCTATGAGGGAAGCACAAACCCTGTGGGGAACACTTTTTAGCGAAGGGAAAGCAACAAAGCATGAAGTTTTGACATCATTATTCAGATCGGACGGTGGAGAATATGGGAGGAAGCGTAATTGGACTATCAGTTCACTCATAGTCAACATTCTAGCCCCTGTACGATGTGATTCCTTACATTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTTCCTCTTCTTCTTTTTCTTCTGATGTTCAGCTTCTTTTGGGAAAGATCAGAGCTTCACTTGAAGGAGACACGCAAAACTTGCTTTTGTCTTCATGGAATTACTCTCTGCCTCTTTGTCAATGGAGGGGACTCAAATGGGTCTTCTCTACTGGAACTCCACTGGTCTGCAGTGATTCTTCTTCTCCACAGTGGTCTAATCTCACTCTTTTCAAAGACCCTTCTCTTCATGTTCTCTCTTTGCAACTTCCATCTGCTAATCTCACTGGTTCGTTGCCCAAGGAGCTTGGTGAGTTCACTATGCTCCAAAGCCTCTATCTAAGTATAAACTCTTTGACTGGAACCATTCCACTTGAACTTGGTTACAGCTCCTCTCTTTCTGACATTGATTTGAGTAGCAATCTTTTGACTGGAGCTCTTCCACCCTCGATCTGGAATCTGTGTGAGAAACTTGTTTCTGTCAGACTACATGGCAATTCATTATCTGGGTCACTGCCGGAGCCGGCTTTACCAAACTCCACCTGCAAGAATTTGGAGGCTTTGGATTTGGGCAACAATCAGATTTCAGGTACTTTCCCAGAATTCATTACTAGATTTCAGGGTCTGAAAGAGCTTGATCTTGGGAAAAATTTGTTGTCTGGACAAATCCCTCAGAGCTTAGGCCAGTTAGAGCTGGAGAAGTTGAACCTTTCAAACAACAATTTCAGTGGAATATTGCCTGTTTTTAGTAACTCAAAGTTTGGTGTTGAGGCTTTTGAAGGGAATAGTCCTGGGCTTTGTGGGGAGCCTTTGAAAAGCTGTGCAGGACCTTCTCATTTGAGTTCAGGTGCCATTGCTGGCCTTGTTATCGGCTTGATGACTGGGACAGTGGTTTTAGCTTCGTTGCTTATTGGCTATATGCAAAATAAGAAGAAGAAGAGTATGAGTGAGAGTGAAGATGAGATTGACGAAGGAGAAGATGAAGAGAATGGTGGCAGTATCGGTGCGGGCGGTGAAGGAAAGCTCATTTTGTTTCAGGGTGGTGAGCATCTGACATTGGATGATGTCTTGAATGCTACAGGGCAAGTTATGGAAAAAACAAGCTATGGCACTATATATAAGGCGAAGCTTGCTGATGGAGGCACCATTGCTCTGAGATTGCTGAGGGAAGGTAGTTGCAAAGACAGAAATTCTTGTTTGTCTGTGATTAAACAGTTGGGAAAGATTCGCCATGAGAACTTGATTCCTTTGAGAGCTTTCTATCAGGGAAAGAGAGGAGAGAAGCTCCTTATTTATGACTATCTGCCTATCAGAACTTTACATGATTTTCTACATGAATCTAGAGCAGGAAAACCAGTGTTGAACTGGGCTAGGAGGCACAAGATTGCCTTAGGCATCGCCCGGGGACTAGCGCATCTTCACACAGGTCTTGAAGTGCCCATTACACATGGCAACGTTAGATCAAAAAATGTGCTTGTGGATGACTTCTTTGCAGCGAGACTGACGGAGTTTGGGCTCGACAAGCTAATGATCCCATCGGTAGCTGACGAAATCGTCTCGCTTGCAAAATCAGATGGGTACAAGGCACCGGAGCTGCAACGGATGAAGAAATGCAATTCGAGAACAGATGTGTATGCATTTGGAATCTTGCTATTGGAAATTCTGATTGGGAAGAAACCGGGAAAAAGTGGAAGAAATGGAGAGTTTGTGGATCTGCCATCAATGGTGAAAGTGGCAGTTTTAGAGGAAACAACAATGGAGGTTTTCGATGTGGAGGTTTTGAAAGGGATTAGAAGTCCCATGGAAGATGGAATTGTTCAAGCATTGAAGCTTGCAATGGGCTGCTGTGCTCCAGTGGCTTCAGTAAGACCCTCCATGGATGAAGTTGTGAAGCAGTTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTGTACAGCCCAACAGAAACAAGAAGTGAGATTGGTACCCCATTTTGA 2214 43.95 MYSWVSGETAFFSEAMREAQTLWGTLFSEGKATKHEVLTSLFRSDGGEYGRKRNWTISSLIVNILAPVRCDSLHFLSSSSSSSSSSSSSSSFSSDVQLLLGKIRASLEGDTQNLLLSSWNYSLPLCQWRGLKWVFSTGTPLVCSDSSSPQWSNLTLFKDPSLHVLSLQLPSANLTGSLPKELGEFTMLQSLYLSINSLTGTIPLELGYSSSLSDIDLSSNLLTGALPPSIWNLCEKLVSVRLHGNSLSGSLPEPALPNSTCKNLEALDLGNNQISGTFPEFITRFQGLKELDLGKNLLSGQIPQSLGQLELEKLNLSNNNFSGILPVFSNSKFGVEAFEGNSPGLCGEPLKSCAGPSHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKKSMSESEDEIDEGEDEENGGSIGAGGEGKLILFQGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNSCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPIRTLHDFLHESRAGKPVLNWARRHKIALGIARGLAHLHTGLEVPITHGNVRSKNVLVDDFFAARLTEFGLDKLMIPSVADEIVSLAKSDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKSGRNGEFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEDGIVQALKLAMGCCAPVASVRPSMDEVVKQLEENRPRNRSALYSPTETRSEIGTPF 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8522635 8529763 - CcPI632755_09g009070.1 Cco09g0907 187364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0907 737 Gene3D Transferase(Phosphotransferase) domain 1 515 730 - -
Cco09g0907 737 MobiDBLite consensus disorder prediction 717 737 - -
Cco09g0907 737 SUPERFAMILY Protein kinase-like (PK-like) 442 713 IPR011009 -
Cco09g0907 737 MobiDBLite consensus disorder prediction 393 414 - -
Cco09g0907 737 ProSiteProfiles Protein kinase domain profile. 437 737 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0907 737 SUPERFAMILY L domain-like 109 328 - -
Cco09g0907 737 Gene3D Ribonuclease Inhibitor 95 235 IPR032675 -
Cco09g0907 737 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 166 719 IPR052451 -
Cco09g0907 737 MobiDBLite consensus disorder prediction 718 737 - -
Cco09g0907 737 Pfam Leucine rich repeat 263 321 IPR001611 GO:0005515(InterPro)
Cco09g0907 737 FunFam Leucine-rich repeat receptor-like protein kinase 261 353 - -
Cco09g0907 737 Pfam Protein tyrosine and serine/threonine kinase 441 712 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0907 737 Gene3D Ribonuclease Inhibitor 236 355 IPR032675 -
Cco09g0907 737 Pfam Leucine Rich Repeat 188 207 IPR001611 GO:0005515(InterPro)
Cco09g0907 737 Pfam Leucine Rich Repeat 211 233 IPR001611 GO:0005515(InterPro)
Cco09g0907 737 Gene3D Phosphorylase Kinase; domain 1 423 513 - -
Cco09g0907 737 Coils Coil 387 407 - -
Cco09g0907 737 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 156 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0486 Cco-Chr1:4772241 Cco09g0907 Cco-Chr9:8522635 2.90E-45 dispersed
Cco07g1769 Cco-Chr7:31810622 Cco09g0907 Cco-Chr9:8522635 6.60E-59 dispersed
Cco09g0907 Cco-Chr9:8522635 Cco11g0287 Cco-Chr11:2900088 2.10E-59 dispersed
Cco09g0907 Cco-Chr9:8522635 Cco10g2228 Cco-Chr10:35269785 1.20E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87097 PF07714 PK_Tyr_Ser-Thr 3.20E-25 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0907 - - - 0.0