Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0909 | ATGAATGATCTTGTGGAATTTCATTCTGAAGATTTGCATGCAGGGTTTGTAAATGAACAACAAGAAGAAATTATGGATCAAACACAGATCTGGCTTCATGATCAAAATCAACAACAACAAAATCATCAAAATTTTCTGTCTGATAATGATGATGATACTTTGATGTTCTACTCCGATTTCCCTCCACTGCCTGATTTTCCATGCATGTCGTCGTCTTCGTCGTCGTCGTCTACTCCTGCTCCGGTTAAAGCTACGGCTTCGTCCTCGTCGTCCTCATCATCGTCCTCCGCCACTTCCTGGGCAGTTTTGAAATCAGATGCTGATGAAATTACTGAAGAAATCAGAACAAATTATGATGCCAACAAATTATCATCGCCTCCGGTAGCGGAGACCGCGTTCACCGGTGGCGGGGATTGTACCGACGATATGATGATGGAGACGTTTGGATACATGGATTTACTCGAAGATAGTAACGAGTTTTTCGATCCGACGTGTATATTTCAAAACGAACAAGAACAACAACAAGAACAACGAGTAGTAGTTGAAGAAGATCAAGAGGGTTTGGAAGATCTGCAATTGGAGAGATTTGAAGAAGTGGAAATGGAGGATTTGATGATGATGCATGGCGGTGAAAGTAAGGATAATGATGATGACAATGGAGGGAAACAAAACGACGTGGTTGAGGAAGAAGATATGGCAAAGGTTTTTTTGGAATGGCTTAGGAGTAATAGAGAAACAGTTTCTGCTGATGATTTGAGGAATGTTAGAATAAAAAAAGCCACCATCGAAAGCGCCGCCCGCCGACTCGGTGGCGGCAAGGAGGGAATGAAACAGCTTTTGAAGCTTGTTCTTCAATGGGTTCAAACAAATCACCTTCACAAGAGAAAATTCAAAGATCTCACAATTGAAACTGATACCCATTTCTTAGGGTTTCAAAATAACCCTAATTCCTCCTCCAACCTCCCTTGGATCCAAACCCCGCCCCCGTTACCGCCTCCGCCTTTGTATTCTCCACCGATGCTCGGATATGTCCCGGCCACTGGCGGAGATGCGTATGGTGTTGGCCGTGGTTTCTCGGATCATTACGGCCAGTTACTTGACTCCTCCTTGTCCTGGAGTAATAATAGTAGTAGTAACAATAATAATAATTTCTCGGGACAGTTTGGACTACCCCCGTCGCATTTCAACTCCTTTGTTGATAATTTTGCGGCGGGGCCTCCCCTGCCACCGCCGCAACCACAAGGTTTTGCAGCGGGGTATGGCGGAGGGCATCAATTCCCATATGTGGGTCAGTATTTTCAAGGGCAGGGTGGTAGTGGTGGCGCCGGTGGTGATAATGGTTTGGTTAGGTTGGATTCCTCAGCAACAAAGGAGGCTCGGAAGAAGAGAATGGCGAGGCAGCGGCGATTCTCTGCACATCATCGCTACCATCATGGTGGCCACCATGGCAACAGCCACCAAGATCAGCATCCCGCTCAGATGAATCCTAATGCTTCAGATCATTGCAACATGGCTACAACTGCTCAGCCCAATGCTGGTAACTGGGTCTACTGGCCGTCCCCCAGCGCAGCAGTGGCCTCTTCCGCCACATCGTCCGGATTTCCGGTGGACTCGCAGCCTGTACAAGCTGTTGATCAGTCTAATTCTTCCATGCAGAATCAGAACTACCCACCACGAATTCCATCTGACCGGCGGCTGGGATGGAAACCAGAGAAAAACTTGAAGTTTCTTTTACAGAAGGTTTTGAAACAAAGCGATGTGGGGAATTTGGGGAGAATTGTACTGCCAAAGAAAGAAGCCGAAACCCATCTCCCAGAATTGGAGGCAAGAGATGGGATTTCCATTGCAATGGAAGACATTGGAACTTCAAGAGTTTGGAATATGCGTTATAGGTATTGGCCAAACAACAAAAGCAGAATGTATCTCCTTGAAAATACAGGGGACTTTGTAAGAGCCAATGGACTTCAAGAAGGAGACTTCATTGTCATCTACTCAGACGTCAAGTGTGGGAAATATATGATTCGAGGAGTGAAAGTACGGCAACCGGGGTCGAAACCCGAGAGCAGAAGGCCAGGAAAATCGCAAAGAAGCCATACGACTGCGGCTGCCAATGCGTCGTCACCTTCGCCAACGACCGTCGCAACCCCGAAGAGACACTAA | 2160 | 46.76 | MNDLVEFHSEDLHAGFVNEQQEEIMDQTQIWLHDQNQQQQNHQNFLSDNDDDTLMFYSDFPPLPDFPCMSSSSSSSSTPAPVKATASSSSSSSSSSATSWAVLKSDADEITEEIRTNYDANKLSSPPVAETAFTGGGDCTDDMMMETFGYMDLLEDSNEFFDPTCIFQNEQEQQQEQRVVVEEDQEGLEDLQLERFEEVEMEDLMMMHGGESKDNDDDNGGKQNDVVEEEDMAKVFLEWLRSNRETVSADDLRNVRIKKATIESAARRLGGGKEGMKQLLKLVLQWVQTNHLHKRKFKDLTIETDTHFLGFQNNPNSSSNLPWIQTPPPLPPPPLYSPPMLGYVPATGGDAYGVGRGFSDHYGQLLDSSLSWSNNSSSNNNNNFSGQFGLPPSHFNSFVDNFAAGPPLPPPQPQGFAAGYGGGHQFPYVGQYFQGQGGSGGAGGDNGLVRLDSSATKEARKKRMARQRRFSAHHRYHHGGHHGNSHQDQHPAQMNPNASDHCNMATTAQPNAGNWVYWPSPSAAVASSATSSGFPVDSQPVQAVDQSNSSMQNQNYPPRIPSDRRLGWKPEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKPESRRPGKSQRSHTTAAANASSPSPTTVATPKRH | 719 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 8540643 | 8543686 | - | CcPI632755_09g009090.1 | Cco09g0909 | 187366 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0909 | 719 | FunFam | B3 domain-containing transcription factor FUS3 | 574 | 688 | - | - | |
Cco09g0909 | 719 | MobiDBLite | consensus disorder prediction | 680 | 719 | - | - | |
Cco09g0909 | 719 | Pfam | B3 DNA binding domain | 579 | 675 | IPR003340 | GO:0003677(InterPro) | |
Cco09g0909 | 719 | MobiDBLite | consensus disorder prediction | 545 | 565 | - | - | |
Cco09g0909 | 719 | MobiDBLite | consensus disorder prediction | 68 | 100 | - | - | |
Cco09g0909 | 719 | MobiDBLite | consensus disorder prediction | 475 | 501 | - | - | |
Cco09g0909 | 719 | MobiDBLite | consensus disorder prediction | 695 | 719 | - | - | |
Cco09g0909 | 719 | SUPERFAMILY | DNA-binding pseudobarrel domain | 577 | 673 | IPR015300 | - | |
Cco09g0909 | 719 | MobiDBLite | consensus disorder prediction | 486 | 501 | - | - | |
Cco09g0909 | 719 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 231 | 687 | IPR044800 | GO:0003700(InterPro) | |
Cco09g0909 | 719 | SMART | B3_2 | 578 | 680 | IPR003340 | GO:0003677(InterPro) | |
Cco09g0909 | 719 | MobiDBLite | consensus disorder prediction | 545 | 559 | - | - | |
Cco09g0909 | 719 | ProSiteProfiles | B3 DNA-binding domain profile. | 578 | 680 | IPR003340 | GO:0003677(InterPro) | |
Cco09g0909 | 719 | CDD | BfiI_C_EcoRII_N_B3 | 576 | 677 | - | - | |
Cco09g0909 | 719 | Gene3D | - | 574 | 690 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0865 | Cco-Chr1:9272497 | Cco09g0909 | Cco-Chr9:8540643 | 2.20E-33 | dispersed | |
Cco04g2093 | Cco-Chr4:34845907 | Cco09g0909 | Cco-Chr9:8540643 | 2.50E-28 | dispersed | |
Cco09g0909 | Cco-Chr9:8540643 | Cco10g2263 | Cco-Chr10:35493958 | 1.00E-13 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59942 | PF02362 | B3 | 1.90E-17 | CL0405 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0909 | K09287 | - | csv:101204282 | 1053.51 |