Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0909 ATGAATGATCTTGTGGAATTTCATTCTGAAGATTTGCATGCAGGGTTTGTAAATGAACAACAAGAAGAAATTATGGATCAAACACAGATCTGGCTTCATGATCAAAATCAACAACAACAAAATCATCAAAATTTTCTGTCTGATAATGATGATGATACTTTGATGTTCTACTCCGATTTCCCTCCACTGCCTGATTTTCCATGCATGTCGTCGTCTTCGTCGTCGTCGTCTACTCCTGCTCCGGTTAAAGCTACGGCTTCGTCCTCGTCGTCCTCATCATCGTCCTCCGCCACTTCCTGGGCAGTTTTGAAATCAGATGCTGATGAAATTACTGAAGAAATCAGAACAAATTATGATGCCAACAAATTATCATCGCCTCCGGTAGCGGAGACCGCGTTCACCGGTGGCGGGGATTGTACCGACGATATGATGATGGAGACGTTTGGATACATGGATTTACTCGAAGATAGTAACGAGTTTTTCGATCCGACGTGTATATTTCAAAACGAACAAGAACAACAACAAGAACAACGAGTAGTAGTTGAAGAAGATCAAGAGGGTTTGGAAGATCTGCAATTGGAGAGATTTGAAGAAGTGGAAATGGAGGATTTGATGATGATGCATGGCGGTGAAAGTAAGGATAATGATGATGACAATGGAGGGAAACAAAACGACGTGGTTGAGGAAGAAGATATGGCAAAGGTTTTTTTGGAATGGCTTAGGAGTAATAGAGAAACAGTTTCTGCTGATGATTTGAGGAATGTTAGAATAAAAAAAGCCACCATCGAAAGCGCCGCCCGCCGACTCGGTGGCGGCAAGGAGGGAATGAAACAGCTTTTGAAGCTTGTTCTTCAATGGGTTCAAACAAATCACCTTCACAAGAGAAAATTCAAAGATCTCACAATTGAAACTGATACCCATTTCTTAGGGTTTCAAAATAACCCTAATTCCTCCTCCAACCTCCCTTGGATCCAAACCCCGCCCCCGTTACCGCCTCCGCCTTTGTATTCTCCACCGATGCTCGGATATGTCCCGGCCACTGGCGGAGATGCGTATGGTGTTGGCCGTGGTTTCTCGGATCATTACGGCCAGTTACTTGACTCCTCCTTGTCCTGGAGTAATAATAGTAGTAGTAACAATAATAATAATTTCTCGGGACAGTTTGGACTACCCCCGTCGCATTTCAACTCCTTTGTTGATAATTTTGCGGCGGGGCCTCCCCTGCCACCGCCGCAACCACAAGGTTTTGCAGCGGGGTATGGCGGAGGGCATCAATTCCCATATGTGGGTCAGTATTTTCAAGGGCAGGGTGGTAGTGGTGGCGCCGGTGGTGATAATGGTTTGGTTAGGTTGGATTCCTCAGCAACAAAGGAGGCTCGGAAGAAGAGAATGGCGAGGCAGCGGCGATTCTCTGCACATCATCGCTACCATCATGGTGGCCACCATGGCAACAGCCACCAAGATCAGCATCCCGCTCAGATGAATCCTAATGCTTCAGATCATTGCAACATGGCTACAACTGCTCAGCCCAATGCTGGTAACTGGGTCTACTGGCCGTCCCCCAGCGCAGCAGTGGCCTCTTCCGCCACATCGTCCGGATTTCCGGTGGACTCGCAGCCTGTACAAGCTGTTGATCAGTCTAATTCTTCCATGCAGAATCAGAACTACCCACCACGAATTCCATCTGACCGGCGGCTGGGATGGAAACCAGAGAAAAACTTGAAGTTTCTTTTACAGAAGGTTTTGAAACAAAGCGATGTGGGGAATTTGGGGAGAATTGTACTGCCAAAGAAAGAAGCCGAAACCCATCTCCCAGAATTGGAGGCAAGAGATGGGATTTCCATTGCAATGGAAGACATTGGAACTTCAAGAGTTTGGAATATGCGTTATAGGTATTGGCCAAACAACAAAAGCAGAATGTATCTCCTTGAAAATACAGGGGACTTTGTAAGAGCCAATGGACTTCAAGAAGGAGACTTCATTGTCATCTACTCAGACGTCAAGTGTGGGAAATATATGATTCGAGGAGTGAAAGTACGGCAACCGGGGTCGAAACCCGAGAGCAGAAGGCCAGGAAAATCGCAAAGAAGCCATACGACTGCGGCTGCCAATGCGTCGTCACCTTCGCCAACGACCGTCGCAACCCCGAAGAGACACTAA 2160 46.76 MNDLVEFHSEDLHAGFVNEQQEEIMDQTQIWLHDQNQQQQNHQNFLSDNDDDTLMFYSDFPPLPDFPCMSSSSSSSSTPAPVKATASSSSSSSSSSATSWAVLKSDADEITEEIRTNYDANKLSSPPVAETAFTGGGDCTDDMMMETFGYMDLLEDSNEFFDPTCIFQNEQEQQQEQRVVVEEDQEGLEDLQLERFEEVEMEDLMMMHGGESKDNDDDNGGKQNDVVEEEDMAKVFLEWLRSNRETVSADDLRNVRIKKATIESAARRLGGGKEGMKQLLKLVLQWVQTNHLHKRKFKDLTIETDTHFLGFQNNPNSSSNLPWIQTPPPLPPPPLYSPPMLGYVPATGGDAYGVGRGFSDHYGQLLDSSLSWSNNSSSNNNNNFSGQFGLPPSHFNSFVDNFAAGPPLPPPQPQGFAAGYGGGHQFPYVGQYFQGQGGSGGAGGDNGLVRLDSSATKEARKKRMARQRRFSAHHRYHHGGHHGNSHQDQHPAQMNPNASDHCNMATTAQPNAGNWVYWPSPSAAVASSATSSGFPVDSQPVQAVDQSNSSMQNQNYPPRIPSDRRLGWKPEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKPESRRPGKSQRSHTTAAANASSPSPTTVATPKRH 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8540643 8543686 - CcPI632755_09g009090.1 Cco09g0909 187366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0909 719 FunFam B3 domain-containing transcription factor FUS3 574 688 - -
Cco09g0909 719 MobiDBLite consensus disorder prediction 680 719 - -
Cco09g0909 719 Pfam B3 DNA binding domain 579 675 IPR003340 GO:0003677(InterPro)
Cco09g0909 719 MobiDBLite consensus disorder prediction 545 565 - -
Cco09g0909 719 MobiDBLite consensus disorder prediction 68 100 - -
Cco09g0909 719 MobiDBLite consensus disorder prediction 475 501 - -
Cco09g0909 719 MobiDBLite consensus disorder prediction 695 719 - -
Cco09g0909 719 SUPERFAMILY DNA-binding pseudobarrel domain 577 673 IPR015300 -
Cco09g0909 719 MobiDBLite consensus disorder prediction 486 501 - -
Cco09g0909 719 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 231 687 IPR044800 GO:0003700(InterPro)
Cco09g0909 719 SMART B3_2 578 680 IPR003340 GO:0003677(InterPro)
Cco09g0909 719 MobiDBLite consensus disorder prediction 545 559 - -
Cco09g0909 719 ProSiteProfiles B3 DNA-binding domain profile. 578 680 IPR003340 GO:0003677(InterPro)
Cco09g0909 719 CDD BfiI_C_EcoRII_N_B3 576 677 - -
Cco09g0909 719 Gene3D - 574 690 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0865 Cco-Chr1:9272497 Cco09g0909 Cco-Chr9:8540643 2.20E-33 dispersed
Cco04g2093 Cco-Chr4:34845907 Cco09g0909 Cco-Chr9:8540643 2.50E-28 dispersed
Cco09g0909 Cco-Chr9:8540643 Cco10g2263 Cco-Chr10:35493958 1.00E-13 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59942 PF02362 B3 1.90E-17 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0909 K09287 - csv:101204282 1053.51